DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| REPA_OB_2 | PF16900 | 55 - 143 | 3.6e-07 | Replication protein A OB domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 80 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 58 |
| AcsI | RAATTY | 5 cut(s) | 149, 305, 377, 390, 467 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 58, 208, 509 |
| AgsI | TTSAA | 5 cut(s) | 109, 154, 239, 395, 443 |
| AjnI | CCWGG | 2 cut(s) | 478, 508 |
| AluBI | AGCT | 2 cut(s) | 9, 464 |
| AluI | AGCT | 2 cut(s) | 9, 464 |
| Alw26I | GTCTC | 2 cut(s) | 133, 477 |
| ApeKI | GCWGC | 2 cut(s) | 168, 296 |
| ApoI | RAATTY | 5 cut(s) | 149, 305, 377, 390, 467 |
| AspLEI | GCGC | 1 cut(s) | 81 |
| AsuHPI | GGTGA | 3 cut(s) | 14, 21, 271 |
| AsuII | TTCGAA | 1 cut(s) | 195 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 440, 473 |
| BbvI | GCAGC | 2 cut(s) | 155, 283 |
| BccI | CCATC | 1 cut(s) | 217 |
| BciT130I | CCWGG | 2 cut(s) | 480, 510 |
| BclI | TGATCA | 1 cut(s) | 19 |
| BcoDI | GTCTC | 2 cut(s) | 133, 477 |
| BfaI | CTAG | 1 cut(s) | 129 |
| BglII | AGATCT | 1 cut(s) | 268 |
| BisI | GCNGC | 2 cut(s) | 169, 297 |
| BlsI | GCNGC | 2 cut(s) | 170, 298 |
| Bme1390I | CCNGG | 2 cut(s) | 480, 510 |
| BmrFI | CCNGG | 2 cut(s) | 480, 510 |
| BmsI | GCATC | 5 cut(s) | 180, 283, 316, 338, 407 |
| BpmI | CTGGAG | 3 cut(s) | 157, 171, 492 |
| Bpu14I | TTCGAA | 1 cut(s) | 195 |
| BsaI | GGTCTC | 1 cut(s) | 133 |
| BsaJI | CCNNGG | 2 cut(s) | 143, 509 |
| BsaWI | WCCGGW | 1 cut(s) | 219 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 474, 504 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 58, 208, 509 |
| Bse1I | ACTGG | 2 cut(s) | 105, 188 |
| BseBI | CCWGG | 2 cut(s) | 480, 510 |
| BseDI | CCNNGG | 2 cut(s) | 143, 509 |
| BseGI | GGATG | 1 cut(s) | 228 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 58, 208, 509 |
| BseMII | CTCAG | 2 cut(s) | 263, 449 |
| BseNI | ACTGG | 2 cut(s) | 105, 188 |
| BseXI | GCAGC | 2 cut(s) | 155, 283 |
| BsiSI | CCGG | 1 cut(s) | 220 |
| BslFI | GGGAC | 1 cut(s) | 185 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 58, 208, 509 |
| BsmAI | GTCTC | 2 cut(s) | 133, 477 |
| BsmFI | GGGAC | 1 cut(s) | 185 |
| Bso31I | GGTCTC | 1 cut(s) | 133 |
| Bsp119I | TTCGAA | 1 cut(s) | 195 |
| Bsp143I | GATC | 3 cut(s) | 19, 111, 268 |
| BspCNI | CTCAG | 2 cut(s) | 264, 448 |
| BspT104I | TTCGAA | 1 cut(s) | 195 |
| BspTNI | GGTCTC | 1 cut(s) | 133 |
| BsrI | ACTGG | 2 cut(s) | 105, 188 |
| BssECI | CCNNGG | 2 cut(s) | 143, 509 |
| BssMI | GATC | 3 cut(s) | 19, 111, 268 |
| Bst2UI | CCWGG | 2 cut(s) | 480, 510 |
| Bst6I | CTCTTC | 1 cut(s) | 421 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 347 |
| BstBI | TTCGAA | 1 cut(s) | 195 |
| BstDEI | CTNAG | 3 cut(s) | 257, 272, 435 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 507 |
| BstF5I | GGATG | 1 cut(s) | 228 |
| BstHHI | GCGC | 1 cut(s) | 81 |
| BstKTI | GATC | 3 cut(s) | 22, 114, 271 |
| BstMAI | GTCTC | 2 cut(s) | 133, 477 |
| BstMBI | GATC | 3 cut(s) | 19, 111, 268 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 347 |
| BstNI | CCWGG | 2 cut(s) | 480, 510 |
| BstSCI | CCNGG | 2 cut(s) | 478, 508 |
| BstV1I | GCAGC | 2 cut(s) | 155, 283 |
| BstX2I | RGATCY | 1 cut(s) | 268 |
| BstYI | RGATCY | 1 cut(s) | 268 |
| BtgZI | GCGATG | 1 cut(s) | 306 |
| BtsCI | GGATG | 1 cut(s) | 228 |
| BtsIMutI | CAGTG | 1 cut(s) | 98 |
| CfoI | GCGC | 1 cut(s) | 81 |
| CviJI | RGCY | 8 cut(s) | 9, 36, 92, 104, 168, 182, 464, 478 |
| CviKI_1 | RGCY | 8 cut(s) | 9, 36, 92, 104, 168, 182, 464, 478 |
| DdeI | CTNAG | 3 cut(s) | 257, 272, 435 |
| DpnI | GATC | 3 cut(s) | 21, 113, 270 |
| DpnII | GATC | 3 cut(s) | 19, 111, 268 |
| Eam1104I | CTCTTC | 1 cut(s) | 421 |
| EarI | CTCTTC | 1 cut(s) | 421 |
| Eco31I | GGTCTC | 1 cut(s) | 133 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 507 |
| EcoRI | GAATTC | 1 cut(s) | 467 |
| EcoRII | CCWGG | 2 cut(s) | 478, 508 |
| EcoT22I | ATGCAT | 1 cut(s) | 331 |
| FaiI | YATR | 8 cut(s) | 12, 39, 86, 165, 206, 286, 422, 428 |
| FaqI | GGGAC | 1 cut(s) | 185 |
| FbaI | TGATCA | 1 cut(s) | 19 |
| Fnu4HI | GCNGC | 2 cut(s) | 169, 297 |
| FokI | GGATG | 1 cut(s) | 235 |
| Fsp4HI | GCNGC | 2 cut(s) | 169, 297 |
| FspBI | CTAG | 1 cut(s) | 129 |
| FspI | TGCGCA | 1 cut(s) | 80 |
| GlaI | GCGC | 1 cut(s) | 80 |
| GluI | GCNGC | 2 cut(s) | 169, 297 |
| GsuI | CTGGAG | 3 cut(s) | 157, 171, 492 |
| HapII | CCGG | 1 cut(s) | 220 |
| HhaI | GCGC | 1 cut(s) | 81 |
| Hin6I | GCGC | 1 cut(s) | 79 |
| HinP1I | GCGC | 1 cut(s) | 79 |
| HinfI | GANTC | 3 cut(s) | 132, 227, 276 |
| HpaII | CCGG | 1 cut(s) | 220 |
| HphI | GGTGA | 3 cut(s) | 14, 21, 271 |
| Hpy166II | GTNNAC | 1 cut(s) | 357 |
| Hpy188I | TCNGA | 6 cut(s) | 65, 116, 147, 273, 383, 438 |
| Hpy188III | TCNNGA | 4 cut(s) | 109, 129, 136, 248 |
| Hpy8I | GTNNAC | 1 cut(s) | 357 |
| HpyAV | CCTTC | 1 cut(s) | 513 |
| HpyCH4V | TGCA | 3 cut(s) | 171, 299, 329 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 347 |
| HpyF3I | CTNAG | 3 cut(s) | 257, 272, 435 |
| HspAI | GCGC | 1 cut(s) | 79 |
| Ksp22I | TGATCA | 1 cut(s) | 19 |
| Kzo9I | GATC | 3 cut(s) | 19, 111, 268 |
| LpnPI | CCDG | 9 cut(s) | 86, 121, 201, 233, 233, 318, 465, 492, 495 |
| Lsp1109I | GCAGC | 2 cut(s) | 155, 283 |
| LweI | GCATC | 5 cut(s) | 180, 283, 316, 338, 407 |
| MaeI | CTAG | 1 cut(s) | 129 |
| MaeIII | GTNAC | 1 cut(s) | 370 |
| MalI | GATC | 3 cut(s) | 21, 113, 270 |
| MboI | GATC | 3 cut(s) | 19, 111, 268 |
| MboII | GAAGA | 2 cut(s) | 278, 408 |
| MflI | RGATCY | 1 cut(s) | 268 |
| MluCI | AATT | 6 cut(s) | 149, 305, 377, 390, 467, 498 |
| MmeI | TCCRAC | 1 cut(s) | 406 |
| MnlI | CCTC | 3 cut(s) | 153, 255, 444 |
| Mph1103I | ATGCAT | 1 cut(s) | 331 |
| MseI | TTAA | 1 cut(s) | 365 |
| MspI | CCGG | 1 cut(s) | 220 |
| MspR9I | CCNGG | 2 cut(s) | 480, 510 |
| MvaI | CCWGG | 2 cut(s) | 480, 510 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 347 |
| NdeII | GATC | 3 cut(s) | 19, 111, 268 |
| NmuCI | GTSAC | 1 cut(s) | 370 |
| NsbI | TGCGCA | 1 cut(s) | 80 |
| NsiI | ATGCAT | 1 cut(s) | 331 |
| NspV | TTCGAA | 1 cut(s) | 195 |
| PfeI | GAWTC | 3 cut(s) | 132, 227, 276 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 58 |
| PkrI | GCNGC | 2 cut(s) | 170, 298 |
| Psp6I | CCWGG | 2 cut(s) | 478, 508 |
| PspGI | CCWGG | 2 cut(s) | 478, 508 |
| PsuI | RGATCY | 1 cut(s) | 268 |
| SaqAI | TTAA | 1 cut(s) | 365 |
| SatI | GCNGC | 2 cut(s) | 169, 297 |
| Sau3AI | GATC | 3 cut(s) | 19, 111, 268 |
| ScrFI | CCNGG | 2 cut(s) | 480, 510 |
| SetI | ASST | 4 cut(s) | 11, 145, 337, 466 |
| SfaNI | GCATC | 5 cut(s) | 180, 283, 316, 338, 407 |
| SfuI | TTCGAA | 1 cut(s) | 195 |
| Sse9I | AATT | 6 cut(s) | 149, 305, 377, 390, 467, 498 |
| SspMI | CTAG | 1 cut(s) | 129 |
| StyD4I | CCNGG | 2 cut(s) | 478, 508 |
| TaqI | TCGA | 1 cut(s) | 195 |
| TasI | AATT | 6 cut(s) | 149, 305, 377, 390, 467, 498 |
| TfiI | GAWTC | 3 cut(s) | 132, 227, 276 |
| Tru1I | TTAA | 1 cut(s) | 365 |
| Tru9I | TTAA | 1 cut(s) | 365 |
| TscAI | CASTG | 1 cut(s) | 105 |
| TseFI | GTSAC | 1 cut(s) | 370 |
| TseI | GCWGC | 2 cut(s) | 168, 296 |
| Tsp45I | GTSAC | 1 cut(s) | 370 |
| TspDTI | ATGAA | 1 cut(s) | 57 |
| TspRI | CASTG | 1 cut(s) | 105 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 58 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 507 |
| XapI | RAATTY | 5 cut(s) | 149, 305, 377, 390, 467 |
| XbaI | TCTAGA | 1 cut(s) | 128 |
| XspI | CTAG | 1 cut(s) | 129 |
| Zsp2I | ATGCAT | 1 cut(s) | 331 |