DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 118 |
| AclWI | GGATC | 1 cut(s) | 271 |
| AcsI | RAATTY | 4 cut(s) | 30, 220, 241, 350 |
| AcuI | CTGAAG | 1 cut(s) | 475 |
| AcyI | GRCGYC | 1 cut(s) | 72 |
| AfaI | GTAC | 1 cut(s) | 653 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 42, 648 |
| AgsI | TTSAA | 9 cut(s) | 29, 49, 227, 247, 259, 314, 474, 564, 572 |
| AjnI | CCWGG | 1 cut(s) | 41 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 108, 140 |
| AluBI | AGCT | 5 cut(s) | 181, 308, 329, 374, 495 |
| AluI | AGCT | 5 cut(s) | 181, 308, 329, 374, 495 |
| Alw26I | GTCTC | 3 cut(s) | 77, 491, 612 |
| AlwI | GGATC | 1 cut(s) | 271 |
| ApeKI | GCWGC | 1 cut(s) | 635 |
| ApoI | RAATTY | 4 cut(s) | 30, 220, 241, 350 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 576 |
| AsuC2I | CCSGG | 1 cut(s) | 649 |
| BbsI | GAAGAC | 1 cut(s) | 75 |
| BbvI | GCAGC | 1 cut(s) | 622 |
| BciT130I | CCWGG | 1 cut(s) | 43 |
| BclI | TGATCA | 1 cut(s) | 169 |
| BcnI | CCSGG | 1 cut(s) | 649 |
| BcoDI | GTCTC | 3 cut(s) | 77, 491, 612 |
| BisI | GCNGC | 1 cut(s) | 636 |
| BlsI | GCNGC | 1 cut(s) | 637 |
| Bme1390I | CCNGG | 2 cut(s) | 43, 649 |
| BmrFI | CCNGG | 2 cut(s) | 43, 649 |
| BpiI | GAAGAC | 1 cut(s) | 75 |
| BpuMI | CCSGG | 1 cut(s) | 649 |
| BsaHI | GRCGYC | 1 cut(s) | 72 |
| BsaI | GGTCTC | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 1 cut(s) | 41 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 42, 648 |
| Bse118I | RCCGGY | 1 cut(s) | 109 |
| BseBI | CCWGG | 1 cut(s) | 43 |
| BseDI | CCNNGG | 1 cut(s) | 41 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 42, 648 |
| BseMII | CTCAG | 2 cut(s) | 489, 607 |
| BseRI | GAGGAG | 1 cut(s) | 371 |
| BseXI | GCAGC | 1 cut(s) | 622 |
| BsiSI | CCGG | 2 cut(s) | 110, 649 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 42, 648 |
| BsmAI | GTCTC | 3 cut(s) | 77, 491, 612 |
| BsmI | GAATGC | 1 cut(s) | 680 |
| Bso31I | GGTCTC | 1 cut(s) | 77 |
| Bsp143I | GATC | 3 cut(s) | 169, 268, 276 |
| BspCNI | CTCAG | 2 cut(s) | 490, 606 |
| BspPI | GGATC | 1 cut(s) | 271 |
| BspTNI | GGTCTC | 1 cut(s) | 77 |
| BsrFI | RCCGGY | 1 cut(s) | 109 |
| BssAI | RCCGGY | 1 cut(s) | 109 |
| BssECI | CCNNGG | 1 cut(s) | 41 |
| BssMI | GATC | 3 cut(s) | 169, 268, 276 |
| BssNI | GRCGYC | 1 cut(s) | 72 |
| Bst2UI | CCWGG | 1 cut(s) | 43 |
| Bst6I | CTCTTC | 3 cut(s) | 433, 476, 494 |
| BstACI | GRCGYC | 1 cut(s) | 72 |
| BstC8I | GCNNGC | 1 cut(s) | 76 |
| BstDEI | CTNAG | 2 cut(s) | 498, 593 |
| BstKTI | GATC | 3 cut(s) | 172, 271, 279 |
| BstMAI | GTCTC | 3 cut(s) | 77, 491, 612 |
| BstMBI | GATC | 3 cut(s) | 169, 268, 276 |
| BstNI | CCWGG | 1 cut(s) | 43 |
| BstSCI | CCNGG | 2 cut(s) | 41, 647 |
| BstV1I | GCAGC | 1 cut(s) | 622 |
| BstV2I | GAAGAC | 1 cut(s) | 75 |
| BtgZI | GCGATG | 1 cut(s) | 93 |
| Cac8I | GCNNGC | 1 cut(s) | 76 |
| Cfr10I | RCCGGY | 1 cut(s) | 109 |
| CseI | GACGC | 1 cut(s) | 80 |
| Csp6I | GTAC | 1 cut(s) | 652 |
| CviAII | CATG | 1 cut(s) | 135 |
| CviJI | RGCY | 7 cut(s) | 113, 181, 308, 329, 347, 374, 495 |
| CviKI_1 | RGCY | 7 cut(s) | 113, 181, 308, 329, 347, 374, 495 |
| CviQI | GTAC | 1 cut(s) | 652 |
| DdeI | CTNAG | 2 cut(s) | 498, 593 |
| DpnI | GATC | 3 cut(s) | 171, 270, 278 |
| DpnII | GATC | 3 cut(s) | 169, 268, 276 |
| Eam1104I | CTCTTC | 3 cut(s) | 433, 476, 494 |
| EarI | CTCTTC | 3 cut(s) | 433, 476, 494 |
| Eco31I | GGTCTC | 1 cut(s) | 77 |
| Eco57I | CTGAAG | 1 cut(s) | 475 |
| EcoRII | CCWGG | 1 cut(s) | 41 |
| FaeI | CATG | 1 cut(s) | 138 |
| FaiI | YATR | 8 cut(s) | 136, 141, 187, 189, 213, 336, 378, 672 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 473, 505 |
| FatI | CATG | 1 cut(s) | 134 |
| FauNDI | CATATG | 1 cut(s) | 187 |
| FbaI | TGATCA | 1 cut(s) | 169 |
| Fnu4HI | GCNGC | 1 cut(s) | 636 |
| Fsp4HI | GCNGC | 1 cut(s) | 636 |
| GluI | GCNGC | 1 cut(s) | 636 |
| HapII | CCGG | 2 cut(s) | 110, 649 |
| HgaI | GACGC | 1 cut(s) | 80 |
| Hin1I | GRCGYC | 1 cut(s) | 72 |
| Hin1II | CATG | 1 cut(s) | 138 |
| HindIII | AAGCTT | 1 cut(s) | 327 |
| HinfI | GANTC | 2 cut(s) | 338, 484 |
| HpaII | CCGG | 2 cut(s) | 110, 649 |
| Hpy166II | GTNNAC | 2 cut(s) | 107, 165 |
| Hpy188I | TCNGA | 3 cut(s) | 480, 499, 622 |
| Hpy188III | TCNNGA | 1 cut(s) | 595 |
| Hpy8I | GTNNAC | 2 cut(s) | 107, 165 |
| Hpy99I | CGWCG | 1 cut(s) | 296 |
| HpyAV | CCTTC | 1 cut(s) | 47 |
| HpyCH4IV | ACGT | 1 cut(s) | 118 |
| HpyCH4V | TGCA | 1 cut(s) | 191 |
| HpyF3I | CTNAG | 2 cut(s) | 498, 593 |
| HpySE526I | ACGT | 1 cut(s) | 118 |
| Hsp92I | GRCGYC | 1 cut(s) | 72 |
| Hsp92II | CATG | 1 cut(s) | 138 |
| Ksp22I | TGATCA | 1 cut(s) | 169 |
| Kzo9I | GATC | 3 cut(s) | 169, 268, 276 |
| LpnPI | CCDG | 6 cut(s) | 28, 55, 88, 123, 580, 662 |
| Lsp1109I | GCAGC | 1 cut(s) | 622 |
| MaeII | ACGT | 1 cut(s) | 118 |
| MaeIII | GTNAC | 1 cut(s) | 451 |
| MalI | GATC | 3 cut(s) | 171, 270, 278 |
| MboI | GATC | 3 cut(s) | 169, 268, 276 |
| MboII | GAAGA | 7 cut(s) | 80, 374, 420, 481, 493, 551, 584 |
| MlyI | GAGTC | 1 cut(s) | 493 |
| MnlI | CCTC | 3 cut(s) | 74, 349, 352 |
| MroXI | GAANNNNTTC | 1 cut(s) | 576 |
| MseI | TTAA | 5 cut(s) | 59, 317, 416, 585, 681 |
| MspI | CCGG | 2 cut(s) | 110, 649 |
| MspR9I | CCNGG | 2 cut(s) | 43, 649 |
| Mva1269I | GAATGC | 1 cut(s) | 680 |
| MvaI | CCWGG | 1 cut(s) | 43 |
| NciI | CCSGG | 1 cut(s) | 649 |
| NdeI | CATATG | 1 cut(s) | 187 |
| NdeII | GATC | 3 cut(s) | 169, 268, 276 |
| NlaIII | CATG | 1 cut(s) | 138 |
| NmuCI | GTSAC | 1 cut(s) | 451 |
| PctI | GAATGC | 1 cut(s) | 680 |
| PdmI | GAANNNNTTC | 1 cut(s) | 576 |
| PfeI | GAWTC | 1 cut(s) | 338 |
| PkrI | GCNGC | 1 cut(s) | 637 |
| PleI | GAGTC | 1 cut(s) | 492 |
| PpsI | GAGTC | 1 cut(s) | 492 |
| Psp1406I | AACGTT | 1 cut(s) | 118 |
| Psp6I | CCWGG | 1 cut(s) | 41 |
| PspGI | CCWGG | 1 cut(s) | 41 |
| RsaI | GTAC | 1 cut(s) | 653 |
| RsaNI | GTAC | 1 cut(s) | 652 |
| SaqAI | TTAA | 5 cut(s) | 59, 317, 416, 585, 681 |
| SatI | GCNGC | 1 cut(s) | 636 |
| Sau3AI | GATC | 3 cut(s) | 169, 268, 276 |
| SchI | GAGTC | 1 cut(s) | 493 |
| ScrFI | CCNGG | 2 cut(s) | 43, 649 |
| SetI | ASST | 7 cut(s) | 121, 183, 310, 331, 376, 424, 497 |
| StyD4I | CCNGG | 2 cut(s) | 41, 647 |
| TaiI | ACGT | 1 cut(s) | 121 |
| TaqI | TCGA | 4 cut(s) | 66, 153, 232, 291 |
| TfiI | GAWTC | 1 cut(s) | 338 |
| Tru1I | TTAA | 5 cut(s) | 59, 317, 416, 585, 681 |
| Tru9I | TTAA | 5 cut(s) | 59, 317, 416, 585, 681 |
| TseFI | GTSAC | 1 cut(s) | 451 |
| TseI | GCWGC | 1 cut(s) | 635 |
| Tsp45I | GTSAC | 1 cut(s) | 451 |
| TspDTI | ATGAA | 5 cut(s) | 123, 351, 375, 564, 687 |
| XapI | RAATTY | 4 cut(s) | 30, 220, 241, 350 |
| XmnI | GAANNNNTTC | 1 cut(s) | 576 |