DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 134 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 393 |
| AccB1I | GGYRCC | 1 cut(s) | 94 |
| AccI | GTMKAC | 1 cut(s) | 326 |
| AccII | CGCG | 1 cut(s) | 256 |
| AciI | CCGC | 8 cut(s) | 239, 256, 413, 459, 1014, 1082, 1302, 1337 |
| AclWI | GGATC | 1 cut(s) | 600 |
| AcsI | RAATTY | 3 cut(s) | 552, 898, 920 |
| AfaI | GTAC | 4 cut(s) | 70, 226, 807, 1254 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 890, 1336 |
| AgsI | TTSAA | 7 cut(s) | 424, 639, 908, 920, 1092, 1127, 1310 |
| AjiI | CACGTC | 2 cut(s) | 934, 1062 |
| AjnI | CCWGG | 1 cut(s) | 977 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 11, 43 |
| AluBI | AGCT | 8 cut(s) | 170, 635, 860, 994, 1052, 1217, 1313, 1334 |
| AluI | AGCT | 8 cut(s) | 170, 635, 860, 994, 1052, 1217, 1313, 1334 |
| Alw26I | GTCTC | 4 cut(s) | 334, 379, 421, 924 |
| AlwI | GGATC | 1 cut(s) | 600 |
| AoxI | GGCC | 2 cut(s) | 757, 1084 |
| ApeKI | GCWGC | 3 cut(s) | 191, 260, 1334 |
| ApoI | RAATTY | 3 cut(s) | 552, 898, 920 |
| AseI | ATTAAT | 1 cut(s) | 647 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 924 |
| AspA2I | CCTAGG | 1 cut(s) | 86 |
| AspLEI | GCGC | 1 cut(s) | 256 |
| AspS9I | GGNCC | 1 cut(s) | 1084 |
| AsuC2I | CCSGG | 1 cut(s) | 590 |
| AvrII | CCTAGG | 1 cut(s) | 86 |
| BanI | GGYRCC | 1 cut(s) | 94 |
| BanII | GRGCYC | 2 cut(s) | 274, 970 |
| BbsI | GAAGAC | 1 cut(s) | 389 |
| BbvI | GCAGC | 3 cut(s) | 203, 247, 1321 |
| BccI | CCATC | 2 cut(s) | 34, 85 |
| BceAI | ACGGC | 1 cut(s) | 540 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 588, 622 |
| BciT130I | CCWGG | 1 cut(s) | 979 |
| BclI | TGATCA | 1 cut(s) | 505 |
| BcnI | CCSGG | 1 cut(s) | 590 |
| BcoDI | GTCTC | 4 cut(s) | 334, 379, 421, 924 |
| BfaI | CTAG | 4 cut(s) | 72, 87, 144, 1331 |
| BfmI | CTRYAG | 2 cut(s) | 330, 630 |
| BisI | GCNGC | 7 cut(s) | 192, 240, 261, 414, 1014, 1335, 1338 |
| BlnI | CCTAGG | 1 cut(s) | 86 |
| BlsI | GCNGC | 7 cut(s) | 193, 241, 262, 415, 1015, 1336, 1339 |
| BmcAI | AGTACT | 1 cut(s) | 807 |
| Bme1390I | CCNGG | 2 cut(s) | 590, 979 |
| BmgBI | CACGTC | 2 cut(s) | 934, 1062 |
| BmgT120I | GGNCC | 1 cut(s) | 1084 |
| BmiI | GGNNCC | 1 cut(s) | 96 |
| BmrFI | CCNGG | 2 cut(s) | 590, 979 |
| BmsI | GCATC | 2 cut(s) | 178, 400 |
| BpiI | GAAGAC | 1 cut(s) | 389 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 928, 960 |
| BpuEI | CTTGAG | 1 cut(s) | 382 |
| BpuMI | CCSGG | 1 cut(s) | 590 |
| BsaJI | CCNNGG | 4 cut(s) | 86, 977, 1285, 1356 |
| BsaWI | WCCGGW | 1 cut(s) | 743 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 890, 1336 |
| BseBI | CCWGG | 1 cut(s) | 979 |
| BseDI | CCNNGG | 4 cut(s) | 86, 977, 1285, 1356 |
| BseGI | GGATG | 1 cut(s) | 96 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 890, 1336 |
| BseRI | GAGGAG | 1 cut(s) | 695 |
| BseXI | GCAGC | 3 cut(s) | 203, 247, 1321 |
| Bsh1236I | CGCG | 1 cut(s) | 256 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1041 |
| BshFI | GGCC | 2 cut(s) | 759, 1086 |
| BshNI | GGYRCC | 1 cut(s) | 94 |
| BsiEI | CGRYCG | 1 cut(s) | 1041 |
| BsiSI | CCGG | 2 cut(s) | 590, 744 |
| BslFI | GGGAC | 1 cut(s) | 371 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 890, 1336 |
| BsmAI | GTCTC | 4 cut(s) | 334, 379, 421, 924 |
| BsmBI | CGTCTC | 1 cut(s) | 924 |
| BsmFI | GGGAC | 1 cut(s) | 371 |
| BsnI | GGCC | 2 cut(s) | 759, 1086 |
| Bsp1286I | GDGCHC | 2 cut(s) | 274, 970 |
| Bsp143I | GATC | 2 cut(s) | 505, 592 |
| Bsp19I | CCATGG | 1 cut(s) | 1356 |
| BspACI | CCGC | 8 cut(s) | 239, 256, 413, 459, 1014, 1082, 1302, 1337 |
| BspANI | GGCC | 2 cut(s) | 759, 1086 |
| BspFNI | CGCG | 1 cut(s) | 256 |
| BspLI | GGNNCC | 1 cut(s) | 96 |
| BspPI | GGATC | 1 cut(s) | 600 |
| BspQI | GCTCTTC | 1 cut(s) | 534 |
| BspT107I | GGYRCC | 1 cut(s) | 94 |
| BssECI | CCNNGG | 4 cut(s) | 86, 977, 1285, 1356 |
| BssMI | GATC | 2 cut(s) | 505, 592 |
| BssNAI | GTATAC | 1 cut(s) | 327 |
| BssT1I | CCWWGG | 3 cut(s) | 86, 1285, 1356 |
| Bst1107I | GTATAC | 1 cut(s) | 327 |
| Bst2UI | CCWGG | 1 cut(s) | 979 |
| Bst4CI | ACNGT | 4 cut(s) | 395, 893, 1042, 1179 |
| Bst6I | CTCTTC | 3 cut(s) | 27, 419, 534 |
| BstC8I | GCNNGC | 2 cut(s) | 258, 1084 |
| BstDEI | CTNAG | 2 cut(s) | 1159, 1187 |
| BstDSI | CCRYGG | 1 cut(s) | 1356 |
| BstEII | GGTNACC | 1 cut(s) | 480 |
| BstF5I | GGATG | 1 cut(s) | 96 |
| BstFNI | CGCG | 1 cut(s) | 256 |
| BstHHI | GCGC | 1 cut(s) | 256 |
| BstKTI | GATC | 2 cut(s) | 508, 595 |
| BstMAI | GTCTC | 4 cut(s) | 334, 379, 421, 924 |
| BstMBI | GATC | 2 cut(s) | 505, 592 |
| BstMCI | CGRYCG | 1 cut(s) | 1041 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 260, 269, 857, 1331 |
| BstNI | CCWGG | 1 cut(s) | 979 |
| BstPI | GGTNACC | 1 cut(s) | 480 |
| BstSCI | CCNGG | 2 cut(s) | 588, 977 |
| BstSFI | CTRYAG | 2 cut(s) | 330, 630 |
| BstUI | CGCG | 1 cut(s) | 256 |
| BstV1I | GCAGC | 3 cut(s) | 203, 247, 1321 |
| BstV2I | GAAGAC | 1 cut(s) | 389 |
| BstX2I | RGATCY | 1 cut(s) | 592 |
| BstYI | RGATCY | 1 cut(s) | 592 |
| BstZ17I | GTATAC | 1 cut(s) | 327 |
| BsuRI | GGCC | 2 cut(s) | 759, 1086 |
| BtgI | CCRYGG | 1 cut(s) | 1356 |
| BtrI | CACGTC | 2 cut(s) | 934, 1062 |
| BtsCI | GGATG | 1 cut(s) | 96 |
| Cac8I | GCNNGC | 2 cut(s) | 258, 1084 |
| CfoI | GCGC | 1 cut(s) | 256 |
| Cfr13I | GGNCC | 1 cut(s) | 1084 |
| CseI | GACGC | 1 cut(s) | 635 |
| Csp6I | GTAC | 4 cut(s) | 69, 225, 806, 1253 |
| CviAII | CATG | 5 cut(s) | 65, 797, 1001, 1279, 1357 |
| CviQI | GTAC | 4 cut(s) | 69, 225, 806, 1253 |
| DdeI | CTNAG | 2 cut(s) | 1159, 1187 |
| DpnI | GATC | 2 cut(s) | 507, 594 |
| DpnII | GATC | 2 cut(s) | 505, 592 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 393 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 393 |
| Eam1104I | CTCTTC | 3 cut(s) | 27, 419, 534 |
| EarI | CTCTTC | 3 cut(s) | 27, 419, 534 |
| EciI | GGCGGA | 1 cut(s) | 474 |
| Eco130I | CCWWGG | 3 cut(s) | 86, 1285, 1356 |
| Eco24I | GRGCYC | 2 cut(s) | 274, 970 |
| Eco91I | GGTNACC | 1 cut(s) | 480 |
| EcoO65I | GGTNACC | 1 cut(s) | 480 |
| EcoRI | GAATTC | 2 cut(s) | 552, 920 |
| EcoRII | CCWGG | 1 cut(s) | 977 |
| EcoT14I | CCWWGG | 3 cut(s) | 86, 1285, 1356 |
| EcoT38I | GRGCYC | 2 cut(s) | 274, 970 |
| ErhI | CCWWGG | 3 cut(s) | 86, 1285, 1356 |
| Esp3I | CGTCTC | 1 cut(s) | 924 |
| FaeI | CATG | 5 cut(s) | 68, 800, 1004, 1282, 1360 |
| FaqI | GGGAC | 1 cut(s) | 371 |
| FatI | CATG | 5 cut(s) | 64, 796, 1000, 1278, 1356 |
| FauI | CCCGC | 2 cut(s) | 249, 1075 |
| FbaI | TGATCA | 1 cut(s) | 505 |
| FblI | GTMKAC | 1 cut(s) | 326 |
| Fnu4HI | GCNGC | 7 cut(s) | 192, 240, 261, 414, 1014, 1335, 1338 |
| FokI | GGATG | 1 cut(s) | 103 |
| FriOI | GRGCYC | 2 cut(s) | 274, 970 |
| Fsp4HI | GCNGC | 7 cut(s) | 192, 240, 261, 414, 1014, 1335, 1338 |
| FspBI | CTAG | 4 cut(s) | 72, 87, 144, 1331 |
| GlaI | GCGC | 1 cut(s) | 255 |
| GluI | GCNGC | 7 cut(s) | 192, 240, 261, 414, 1014, 1335, 1338 |
| HaeIII | GGCC | 2 cut(s) | 759, 1086 |
| HapII | CCGG | 2 cut(s) | 590, 744 |
| HgaI | GACGC | 1 cut(s) | 635 |
| HhaI | GCGC | 1 cut(s) | 256 |
| Hin1II | CATG | 5 cut(s) | 68, 800, 1004, 1282, 1360 |
| Hin6I | GCGC | 1 cut(s) | 254 |
| HinP1I | GCGC | 1 cut(s) | 254 |
| HincII | GTYRAC | 1 cut(s) | 315 |
| HindII | GTYRAC | 1 cut(s) | 315 |
| HindIII | AAGCTT | 1 cut(s) | 168 |
| HinfI | GANTC | 4 cut(s) | 82, 245, 610, 1352 |
| HpaI | GTTAAC | 1 cut(s) | 315 |
| HpaII | CCGG | 2 cut(s) | 590, 744 |
| Hpy166II | GTNNAC | 2 cut(s) | 315, 327 |
| Hpy188I | TCNGA | 5 cut(s) | 166, 402, 644, 897, 1205 |
| Hpy188III | TCNNGA | 2 cut(s) | 533, 929 |
| Hpy8I | GTNNAC | 2 cut(s) | 315, 327 |
| HpyAV | CCTTC | 1 cut(s) | 1355 |
| HpyCH4III | ACNGT | 4 cut(s) | 395, 893, 1042, 1179 |
| HpyCH4IV | ACGT | 2 cut(s) | 933, 1061 |
| HpyCH4V | TGCA | 6 cut(s) | 110, 191, 263, 445, 671, 1325 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 260, 269, 857, 1331 |
| HpyF3I | CTNAG | 2 cut(s) | 1159, 1187 |
| HpySE526I | ACGT | 2 cut(s) | 933, 1061 |
| Hsp92II | CATG | 5 cut(s) | 68, 800, 1004, 1282, 1360 |
| HspAI | GCGC | 1 cut(s) | 254 |
| Ksp22I | TGATCA | 1 cut(s) | 505 |
| KspAI | GTTAAC | 1 cut(s) | 315 |
| Kzo9I | GATC | 2 cut(s) | 505, 592 |
| LguI | GCTCTTC | 1 cut(s) | 534 |
| Lsp1109I | GCAGC | 3 cut(s) | 203, 247, 1321 |
| LweI | GCATC | 2 cut(s) | 178, 400 |
| MaeI | CTAG | 4 cut(s) | 72, 87, 144, 1331 |
| MaeII | ACGT | 2 cut(s) | 933, 1061 |
| MaeIII | GTNAC | 2 cut(s) | 480, 584 |
| MalI | GATC | 2 cut(s) | 507, 594 |
| MboI | GATC | 2 cut(s) | 505, 592 |
| MboII | GAAGA | 8 cut(s) | 21, 44, 389, 436, 521, 527, 968, 1175 |
| MflI | RGATCY | 1 cut(s) | 592 |
| MhlI | GDGCHC | 2 cut(s) | 274, 970 |
| MmeI | TCCRAC | 1 cut(s) | 581 |
| MnlI | CCTC | 4 cut(s) | 673, 676, 745, 1008 |
| MroXI | GAANNNNTTC | 1 cut(s) | 924 |
| MseI | TTAA | 8 cut(s) | 215, 288, 314, 390, 569, 647, 654, 1152 |
| MspI | CCGG | 2 cut(s) | 590, 744 |
| MspR9I | CCNGG | 2 cut(s) | 590, 979 |
| MvaI | CCWGG | 1 cut(s) | 979 |
| MvnI | CGCG | 1 cut(s) | 256 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 260, 269, 857, 1331 |
| NciI | CCSGG | 1 cut(s) | 590 |
| NcoI | CCATGG | 1 cut(s) | 1356 |
| NdeII | GATC | 2 cut(s) | 505, 592 |
| NlaIII | CATG | 5 cut(s) | 68, 800, 1004, 1282, 1360 |
| NlaIV | GGNNCC | 1 cut(s) | 96 |
| NmuCI | GTSAC | 1 cut(s) | 584 |
| PciSI | GCTCTTC | 1 cut(s) | 534 |
| PdmI | GAANNNNTTC | 1 cut(s) | 924 |
| PfeI | GAWTC | 4 cut(s) | 82, 245, 610, 1352 |
| PkrI | GCNGC | 7 cut(s) | 193, 241, 262, 415, 1015, 1336, 1339 |
| PshBI | ATTAAT | 1 cut(s) | 647 |
| PsiI | TTATAA | 1 cut(s) | 134 |
| Psp6I | CCWGG | 1 cut(s) | 977 |
| PspEI | GGTNACC | 1 cut(s) | 480 |
| PspGI | CCWGG | 1 cut(s) | 977 |
| PspN4I | GGNNCC | 1 cut(s) | 96 |
| PspPI | GGNCC | 1 cut(s) | 1084 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1221, 1253 |
| PsuI | RGATCY | 1 cut(s) | 592 |
| RsaI | GTAC | 4 cut(s) | 70, 226, 807, 1254 |
| RsaNI | GTAC | 4 cut(s) | 69, 225, 806, 1253 |
| SapI | GCTCTTC | 1 cut(s) | 534 |
| SaqAI | TTAA | 8 cut(s) | 215, 288, 314, 390, 569, 647, 654, 1152 |
| SatI | GCNGC | 7 cut(s) | 192, 240, 261, 414, 1014, 1335, 1338 |
| Sau3AI | GATC | 2 cut(s) | 505, 592 |
| Sau96I | GGNCC | 1 cut(s) | 1084 |
| ScaI | AGTACT | 1 cut(s) | 807 |
| ScrFI | CCNGG | 2 cut(s) | 590, 979 |
| SduI | GDGCHC | 2 cut(s) | 274, 970 |
| SfaNI | GCATC | 2 cut(s) | 178, 400 |
| SfcI | CTRYAG | 2 cut(s) | 330, 630 |
| SmlI | CTYRAG | 1 cut(s) | 361 |
| SmoI | CTYRAG | 1 cut(s) | 361 |
| SsiI | CCGC | 8 cut(s) | 239, 256, 413, 459, 1014, 1082, 1302, 1337 |
| SspI | AATATT | 1 cut(s) | 1210 |
| SspMI | CTAG | 4 cut(s) | 72, 87, 144, 1331 |
| StyD4I | CCNGG | 2 cut(s) | 588, 977 |
| StyI | CCWWGG | 3 cut(s) | 86, 1285, 1356 |
| TaaI | ACNGT | 4 cut(s) | 395, 893, 1042, 1179 |
| TaiI | ACGT | 2 cut(s) | 936, 1064 |
| TaqI | TCGA | 4 cut(s) | 532, 608, 928, 1195 |
| TatI | WGTACW | 1 cut(s) | 805 |
| TauI | GCSGC | 4 cut(s) | 242, 416, 1016, 1340 |
| TfiI | GAWTC | 4 cut(s) | 82, 245, 610, 1352 |
| Tru1I | TTAA | 8 cut(s) | 215, 288, 314, 390, 569, 647, 654, 1152 |
| Tru9I | TTAA | 8 cut(s) | 215, 288, 314, 390, 569, 647, 654, 1152 |
| TseFI | GTSAC | 1 cut(s) | 584 |
| TseI | GCWGC | 3 cut(s) | 191, 260, 1334 |
| Tsp45I | GTSAC | 1 cut(s) | 584 |
| TspDTI | ATGAA | 6 cut(s) | 44, 116, 335, 707, 913, 1236 |
| TspGWI | ACGGA | 1 cut(s) | 383 |
| VspI | ATTAAT | 1 cut(s) | 647 |
| XapI | RAATTY | 3 cut(s) | 552, 898, 920 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 998 |
| XmaJI | CCTAGG | 1 cut(s) | 86 |
| XmiI | GTMKAC | 1 cut(s) | 326 |
| XmnI | GAANNNNTTC | 1 cut(s) | 924 |
| XspI | CTAG | 4 cut(s) | 72, 87, 144, 1331 |
| ZrmI | AGTACT | 1 cut(s) | 807 |