DNA recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 578 |
| AccB1I | GGYRCC | 1 cut(s) | 82 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 728 |
| AciI | CCGC | 1 cut(s) | 1185 |
| AclI | AACGTT | 1 cut(s) | 278 |
| AclWI | GGATC | 6 cut(s) | 596, 609, 713, 726, 865, 878 |
| AcsI | RAATTY | 6 cut(s) | 44, 387, 762, 848, 929, 959 |
| AcuI | CTGAAG | 1 cut(s) | 318 |
| AfaI | GTAC | 3 cut(s) | 74, 680, 788 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 728 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 849, 881 |
| AleI | CACNNNNGTG | 1 cut(s) | 231 |
| AluBI | AGCT | 8 cut(s) | 20, 122, 193, 302, 506, 548, 862, 1172 |
| AluI | AGCT | 8 cut(s) | 20, 122, 193, 302, 506, 548, 862, 1172 |
| Alw21I | GWGCWC | 3 cut(s) | 184, 228, 1174 |
| Alw44I | GTGCAC | 1 cut(s) | 224 |
| AlwI | GGATC | 6 cut(s) | 596, 609, 713, 726, 865, 878 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 193 |
| ApaLI | GTGCAC | 1 cut(s) | 224 |
| ApeKI | GCWGC | 3 cut(s) | 187, 190, 1045 |
| ApoI | RAATTY | 6 cut(s) | 44, 387, 762, 848, 929, 959 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 611, 643, 723, 755 |
| AseI | ATTAAT | 1 cut(s) | 210 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 516 |
| AsuHPI | GGTGA | 3 cut(s) | 805, 866, 1199 |
| AsuII | TTCGAA | 1 cut(s) | 49 |
| BaeGI | GKGCMC | 1 cut(s) | 228 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 615, 648 |
| BamHI | GGATCC | 3 cut(s) | 601, 718, 870 |
| BanI | GGYRCC | 1 cut(s) | 82 |
| BanII | GRGCYC | 1 cut(s) | 1174 |
| BbsI | GAAGAC | 1 cut(s) | 1080 |
| Bbv12I | GWGCWC | 3 cut(s) | 184, 228, 1174 |
| BbvI | GCAGC | 3 cut(s) | 199, 202, 1057 |
| BccI | CCATC | 1 cut(s) | 161 |
| BciVI | GTATCC | 1 cut(s) | 1027 |
| BfmI | CTRYAG | 1 cut(s) | 185 |
| BfuI | GTATCC | 1 cut(s) | 1027 |
| BglII | AGATCT | 2 cut(s) | 372, 607 |
| BisI | GCNGC | 3 cut(s) | 188, 191, 1046 |
| BlsI | GCNGC | 3 cut(s) | 189, 192, 1047 |
| BmiI | GGNNCC | 5 cut(s) | 84, 198, 603, 720, 872 |
| BmsI | GCATC | 2 cut(s) | 650, 699 |
| BpiI | GAAGAC | 1 cut(s) | 1080 |
| Bpu14I | TTCGAA | 1 cut(s) | 49 |
| Bsa29I | ATCGAT | 1 cut(s) | 582 |
| BsaBI | GATNNNNATC | 1 cut(s) | 606 |
| BsaJI | CCNNGG | 2 cut(s) | 535, 773 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 728 |
| Bse1I | ACTGG | 3 cut(s) | 677, 733, 1186 |
| Bse3DI | GCAATG | 2 cut(s) | 291, 1047 |
| Bse8I | GATNNNNATC | 1 cut(s) | 606 |
| BseCI | ATCGAT | 1 cut(s) | 582 |
| BseDI | CCNNGG | 2 cut(s) | 535, 773 |
| BseGI | GGATG | 3 cut(s) | 153, 435, 751 |
| BseJI | GATNNNNATC | 1 cut(s) | 606 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 728 |
| BseMI | GCAATG | 2 cut(s) | 291, 1047 |
| BseMII | CTCAG | 3 cut(s) | 110, 563, 1020 |
| BseNI | ACTGG | 3 cut(s) | 677, 733, 1186 |
| BseSI | GKGCMC | 1 cut(s) | 228 |
| BseXI | GCAGC | 3 cut(s) | 199, 202, 1057 |
| BshNI | GGYRCC | 1 cut(s) | 82 |
| BshVI | ATCGAT | 1 cut(s) | 582 |
| BsiHKAI | GWGCWC | 3 cut(s) | 184, 228, 1174 |
| BslFI | GGGAC | 2 cut(s) | 81, 1187 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 728 |
| BsmFI | GGGAC | 2 cut(s) | 81, 1187 |
| BsmI | GAATGC | 2 cut(s) | 835, 994 |
| Bsp119I | TTCGAA | 1 cut(s) | 49 |
| Bsp1286I | GDGCHC | 3 cut(s) | 184, 228, 1174 |
| Bsp143I | GATC | 5 cut(s) | 372, 601, 607, 718, 870 |
| Bsp19I | CCATGG | 1 cut(s) | 773 |
| BspACI | CCGC | 1 cut(s) | 1185 |
| BspCNI | CTCAG | 3 cut(s) | 109, 562, 1021 |
| BspDI | ATCGAT | 1 cut(s) | 582 |
| BspHI | TCATGA | 1 cut(s) | 88 |
| BspLI | GGNNCC | 5 cut(s) | 84, 198, 603, 720, 872 |
| BspMAI | CTGCAG | 1 cut(s) | 189 |
| BspPI | GGATC | 6 cut(s) | 596, 609, 713, 726, 865, 878 |
| BspT104I | TTCGAA | 1 cut(s) | 49 |
| BspT107I | GGYRCC | 1 cut(s) | 82 |
| BsrDI | GCAATG | 2 cut(s) | 291, 1047 |
| BsrI | ACTGG | 3 cut(s) | 677, 733, 1186 |
| BssECI | CCNNGG | 2 cut(s) | 535, 773 |
| BssMI | GATC | 5 cut(s) | 372, 601, 607, 718, 870 |
| BssT1I | CCWWGG | 2 cut(s) | 535, 773 |
| Bst4CI | ACNGT | 6 cut(s) | 72, 274, 666, 735, 918, 1099 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 293 |
| BstBI | TTCGAA | 1 cut(s) | 49 |
| BstC8I | GCNNGC | 4 cut(s) | 28, 688, 1050, 1170 |
| BstDEI | CTNAG | 4 cut(s) | 96, 549, 935, 1029 |
| BstDSI | CCRYGG | 1 cut(s) | 773 |
| BstF5I | GGATG | 3 cut(s) | 153, 435, 751 |
| BstKTI | GATC | 5 cut(s) | 375, 604, 610, 721, 873 |
| BstMBI | GATC | 5 cut(s) | 372, 601, 607, 718, 870 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 293, 696 |
| BstNSI | RCATGY | 1 cut(s) | 30 |
| BstSFI | CTRYAG | 1 cut(s) | 185 |
| BstSLI | GKGCMC | 1 cut(s) | 228 |
| BstV1I | GCAGC | 3 cut(s) | 199, 202, 1057 |
| BstV2I | GAAGAC | 1 cut(s) | 1080 |
| BstX2I | RGATCY | 5 cut(s) | 372, 601, 607, 718, 870 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 774 |
| BstYI | RGATCY | 5 cut(s) | 372, 601, 607, 718, 870 |
| Bsu15I | ATCGAT | 1 cut(s) | 582 |
| BsuI | GTATCC | 1 cut(s) | 1027 |
| BsuTUI | ATCGAT | 1 cut(s) | 582 |
| BtgI | CCRYGG | 1 cut(s) | 773 |
| BtsCI | GGATG | 3 cut(s) | 153, 435, 751 |
| BtsIMutI | CAGTG | 3 cut(s) | 726, 1026, 1179 |
| Cac8I | GCNNGC | 4 cut(s) | 28, 688, 1050, 1170 |
| CaiI | CAGNNNCTG | 1 cut(s) | 193 |
| CciI | TCATGA | 1 cut(s) | 88 |
| ClaI | ATCGAT | 1 cut(s) | 582 |
| Csp6I | GTAC | 3 cut(s) | 73, 679, 787 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1047, 1082 |
| CviAII | CATG | 4 cut(s) | 27, 89, 161, 774 |
| CviQI | GTAC | 3 cut(s) | 73, 679, 787 |
| DdeI | CTNAG | 4 cut(s) | 96, 549, 935, 1029 |
| DpnI | GATC | 5 cut(s) | 374, 603, 609, 720, 872 |
| DpnII | GATC | 5 cut(s) | 372, 601, 607, 718, 870 |
| DraI | TTTAAA | 1 cut(s) | 1144 |
| Ecl136II | GAGCTC | 1 cut(s) | 1172 |
| Eco130I | CCWWGG | 2 cut(s) | 535, 773 |
| Eco24I | GRGCYC | 1 cut(s) | 1174 |
| Eco32I | GATATC | 1 cut(s) | 1009 |
| Eco53kI | GAGCTC | 1 cut(s) | 1172 |
| Eco57I | CTGAAG | 1 cut(s) | 318 |
| EcoICRI | GAGCTC | 1 cut(s) | 1172 |
| EcoRV | GATATC | 1 cut(s) | 1009 |
| EcoT14I | CCWWGG | 2 cut(s) | 535, 773 |
| EcoT38I | GRGCYC | 1 cut(s) | 1174 |
| ErhI | CCWWGG | 2 cut(s) | 535, 773 |
| FaeI | CATG | 4 cut(s) | 30, 92, 164, 777 |
| FaqI | GGGAC | 2 cut(s) | 81, 1187 |
| FatI | CATG | 4 cut(s) | 26, 88, 160, 773 |
| Fnu4HI | GCNGC | 3 cut(s) | 188, 191, 1046 |
| FokI | GGATG | 3 cut(s) | 140, 422, 738 |
| FriOI | GRGCYC | 1 cut(s) | 1174 |
| Fsp4HI | GCNGC | 3 cut(s) | 188, 191, 1046 |
| GluI | GCNGC | 3 cut(s) | 188, 191, 1046 |
| Hin1II | CATG | 4 cut(s) | 30, 92, 164, 777 |
| HincII | GTYRAC | 2 cut(s) | 108, 1071 |
| HindII | GTYRAC | 2 cut(s) | 108, 1071 |
| HindIII | AAGCTT | 2 cut(s) | 300, 860 |
| HinfI | GANTC | 2 cut(s) | 796, 1157 |
| HphI | GGTGA | 3 cut(s) | 805, 866, 1199 |
| Hpy166II | GTNNAC | 3 cut(s) | 108, 226, 1071 |
| Hpy188I | TCNGA | 3 cut(s) | 128, 493, 552 |
| Hpy188III | TCNNGA | 5 cut(s) | 89, 370, 509, 605, 806 |
| Hpy8I | GTNNAC | 3 cut(s) | 108, 226, 1071 |
| HpyCH4III | ACNGT | 6 cut(s) | 72, 274, 666, 735, 918, 1099 |
| HpyCH4IV | ACGT | 2 cut(s) | 278, 1023 |
| HpyCH4V | TGCA | 8 cut(s) | 26, 187, 226, 530, 613, 712, 879, 1045 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 293, 696 |
| HpyF3I | CTNAG | 4 cut(s) | 96, 549, 935, 1029 |
| HpySE526I | ACGT | 2 cut(s) | 278, 1023 |
| Hsp92II | CATG | 4 cut(s) | 30, 92, 164, 777 |
| Kzo9I | GATC | 5 cut(s) | 372, 601, 607, 718, 870 |
| Lsp1109I | GCAGC | 3 cut(s) | 199, 202, 1057 |
| LweI | GCATC | 2 cut(s) | 650, 699 |
| MaeII | ACGT | 2 cut(s) | 278, 1023 |
| MaeIII | GTNAC | 3 cut(s) | 274, 352, 1024 |
| MalI | GATC | 5 cut(s) | 374, 603, 609, 720, 872 |
| MboI | GATC | 5 cut(s) | 372, 601, 607, 718, 870 |
| MboII | GAAGA | 7 cut(s) | 127, 300, 303, 821, 1080, 1098, 1202 |
| MflI | RGATCY | 5 cut(s) | 372, 601, 607, 718, 870 |
| MhlI | GDGCHC | 3 cut(s) | 184, 228, 1174 |
| MmeI | TCCRAC | 2 cut(s) | 746, 791 |
| MroXI | GAANNNNTTC | 1 cut(s) | 516 |
| MseI | TTAA | 5 cut(s) | 57, 210, 893, 996, 1143 |
| MslI | CAYNNNNRTG | 2 cut(s) | 231, 631 |
| MspA1I | CMGCKG | 1 cut(s) | 193 |
| Mva1269I | GAATGC | 2 cut(s) | 835, 994 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 293, 696 |
| NcoI | CCATGG | 1 cut(s) | 773 |
| NdeII | GATC | 5 cut(s) | 372, 601, 607, 718, 870 |
| NlaIII | CATG | 4 cut(s) | 30, 92, 164, 777 |
| NlaIV | GGNNCC | 5 cut(s) | 84, 198, 603, 720, 872 |
| NmuCI | GTSAC | 2 cut(s) | 352, 1024 |
| NspI | RCATGY | 1 cut(s) | 30 |
| NspV | TTCGAA | 1 cut(s) | 49 |
| OliI | CACNNNNGTG | 1 cut(s) | 231 |
| PaeI | GCATGC | 1 cut(s) | 30 |
| PagI | TCATGA | 1 cut(s) | 88 |
| PctI | GAATGC | 2 cut(s) | 835, 994 |
| PdmI | GAANNNNTTC | 1 cut(s) | 516 |
| PfeI | GAWTC | 2 cut(s) | 796, 1157 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 728 |
| PkrI | GCNGC | 3 cut(s) | 189, 192, 1047 |
| PshBI | ATTAAT | 1 cut(s) | 210 |
| PsiI | TTATAA | 1 cut(s) | 578 |
| Psp124BI | GAGCTC | 1 cut(s) | 1174 |
| Psp1406I | AACGTT | 1 cut(s) | 278 |
| PspN4I | GGNNCC | 5 cut(s) | 84, 198, 603, 720, 872 |
| PstI | CTGCAG | 1 cut(s) | 189 |
| PstNI | CAGNNNCTG | 1 cut(s) | 193 |
| PsuI | RGATCY | 5 cut(s) | 372, 601, 607, 718, 870 |
| PvuII | CAGCTG | 1 cut(s) | 193 |
| RsaI | GTAC | 3 cut(s) | 74, 680, 788 |
| RsaNI | GTAC | 3 cut(s) | 73, 679, 787 |
| RseI | CAYNNNNRTG | 2 cut(s) | 231, 631 |
| SacI | GAGCTC | 1 cut(s) | 1174 |
| SaqAI | TTAA | 5 cut(s) | 57, 210, 893, 996, 1143 |
| SatI | GCNGC | 3 cut(s) | 188, 191, 1046 |
| Sau3AI | GATC | 5 cut(s) | 372, 601, 607, 718, 870 |
| SduI | GDGCHC | 3 cut(s) | 184, 228, 1174 |
| SfaNI | GCATC | 2 cut(s) | 650, 699 |
| SfcI | CTRYAG | 1 cut(s) | 185 |
| SfuI | TTCGAA | 1 cut(s) | 49 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 231, 631 |
| SphI | GCATGC | 1 cut(s) | 30 |
| SsiI | CCGC | 1 cut(s) | 1185 |
| SspI | AATATT | 1 cut(s) | 253 |
| SstI | GAGCTC | 1 cut(s) | 1174 |
| StyI | CCWWGG | 2 cut(s) | 535, 773 |
| TaaI | ACNGT | 6 cut(s) | 72, 274, 666, 735, 918, 1099 |
| TaiI | ACGT | 2 cut(s) | 281, 1026 |
| TaqI | TCGA | 4 cut(s) | 49, 113, 381, 582 |
| TatI | WGTACW | 1 cut(s) | 786 |
| TfiI | GAWTC | 2 cut(s) | 796, 1157 |
| Tru1I | TTAA | 5 cut(s) | 57, 210, 893, 996, 1143 |
| Tru9I | TTAA | 5 cut(s) | 57, 210, 893, 996, 1143 |
| TscAI | CASTG | 3 cut(s) | 733, 1033, 1186 |
| TseFI | GTSAC | 2 cut(s) | 352, 1024 |
| TseI | GCWGC | 3 cut(s) | 187, 190, 1045 |
| Tsp45I | GTSAC | 2 cut(s) | 352, 1024 |
| TspRI | CASTG | 3 cut(s) | 733, 1033, 1186 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 728 |
| VneI | GTGCAC | 1 cut(s) | 224 |
| VspI | ATTAAT | 1 cut(s) | 210 |
| XapI | RAATTY | 6 cut(s) | 44, 387, 762, 848, 929, 959 |
| XceI | RCATGY | 1 cut(s) | 30 |
| XmnI | GAANNNNTTC | 1 cut(s) | 516 |