DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1493 |
| Acc16I | TGCGCA | 1 cut(s) | 1286 |
| Acc36I | ACCTGC | 1 cut(s) | 1493 |
| Acc65I | GGTACC | 1 cut(s) | 1621 |
| AccB1I | GGYRCC | 2 cut(s) | 1621, 1933 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 619, 985 |
| AccI | GTMKAC | 2 cut(s) | 1410, 1475 |
| AccIII | TCCGGA | 2 cut(s) | 630, 1739 |
| AclWI | GGATC | 9 cut(s) | 14, 262, 320, 604, 628, 641, 838, 1501, 1579 |
| AcsI | RAATTY | 5 cut(s) | 288, 389, 705, 1735, 1967 |
| AcuI | CTGAAG | 1 cut(s) | 846 |
| AfeI | AGCGCT | 1 cut(s) | 103 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 243, 412, 619, 656, 985, 1604, 2025 |
| AflIII | ACRYGT | 1 cut(s) | 1592 |
| AhlI | ACTAGT | 1 cut(s) | 259 |
| AjnI | CCWGG | 4 cut(s) | 405, 411, 576, 1130 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1357, 1389 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 573, 605 |
| Alw26I | GTCTC | 1 cut(s) | 1158 |
| AlwI | GGATC | 9 cut(s) | 14, 262, 320, 604, 628, 641, 838, 1501, 1579 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 910 |
| Aor13HI | TCCGGA | 2 cut(s) | 630, 1739 |
| Aor51HI | AGCGCT | 1 cut(s) | 103 |
| AoxI | GGCC | 1 cut(s) | 1247 |
| ApeKI | GCWGC | 3 cut(s) | 440, 904, 907 |
| ApoI | RAATTY | 5 cut(s) | 288, 389, 705, 1735, 1967 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 27, 59 |
| AseI | ATTAAT | 1 cut(s) | 176 |
| Asp718I | GGTACC | 1 cut(s) | 1621 |
| AspLEI | GCGC | 4 cut(s) | 104, 904, 1287, 1705 |
| AspS9I | GGNCC | 2 cut(s) | 403, 409 |
| AvaII | GGWCC | 2 cut(s) | 403, 409 |
| AxyI | CCTNAGG | 2 cut(s) | 729, 1317 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1227, 1260 |
| BamHI | GGATCC | 1 cut(s) | 633 |
| BanI | GGYRCC | 2 cut(s) | 1621, 1933 |
| BbsI | GAAGAC | 3 cut(s) | 428, 531, 1902 |
| BbvI | GCAGC | 3 cut(s) | 452, 894, 916 |
| BccI | CCATC | 9 cut(s) | 592, 979, 987, 1082, 1091, 1518, 1655, 1678, 1766 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1282, 1316 |
| BciT130I | CCWGG | 4 cut(s) | 407, 413, 578, 1132 |
| BciVI | GTATCC | 1 cut(s) | 61 |
| BclI | TGATCA | 2 cut(s) | 139, 1425 |
| BcoDI | GTCTC | 1 cut(s) | 1158 |
| BcuI | ACTAGT | 1 cut(s) | 259 |
| BfaI | CTAG | 5 cut(s) | 260, 444, 651, 1347, 1586 |
| BfmI | CTRYAG | 1 cut(s) | 1486 |
| BfoI | RGCGCY | 1 cut(s) | 105 |
| BfuAI | ACCTGC | 1 cut(s) | 1493 |
| BfuI | GTATCC | 1 cut(s) | 61 |
| BglII | AGATCT | 1 cut(s) | 1141 |
| BisI | GCNGC | 3 cut(s) | 441, 905, 908 |
| BlsI | GCNGC | 3 cut(s) | 442, 906, 909 |
| BmcAI | AGTACT | 1 cut(s) | 1269 |
| Bme1390I | CCNGG | 4 cut(s) | 407, 413, 578, 1132 |
| Bme18I | GGWCC | 2 cut(s) | 403, 409 |
| BmgT120I | GGNCC | 2 cut(s) | 403, 409 |
| BmiI | GGNNCC | 3 cut(s) | 635, 1623, 1935 |
| BmrFI | CCNGG | 4 cut(s) | 407, 413, 578, 1132 |
| BmsI | GCATC | 2 cut(s) | 481, 1690 |
| BpiI | GAAGAC | 3 cut(s) | 428, 531, 1902 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 461, 493 |
| BpmI | CTGGAG | 2 cut(s) | 1197, 1949 |
| BpuEI | CTTGAG | 1 cut(s) | 1957 |
| Bsa29I | ATCGAT | 1 cut(s) | 1086 |
| BsaBI | GATNNNNATC | 4 cut(s) | 206, 471, 1226, 1430 |
| BsaJI | CCNNGG | 4 cut(s) | 330, 577, 1534, 2023 |
| BsaWI | WCCGGW | 3 cut(s) | 630, 1739, 1963 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 218, 248 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 243, 412, 619, 656, 985, 1604, 2025 |
| Bse1I | ACTGG | 6 cut(s) | 308, 486, 1067, 1214, 1641, 1932 |
| Bse21I | CCTNAGG | 2 cut(s) | 729, 1317 |
| Bse3DI | GCAATG | 1 cut(s) | 970 |
| Bse8I | GATNNNNATC | 4 cut(s) | 206, 471, 1226, 1430 |
| BseAI | TCCGGA | 2 cut(s) | 630, 1739 |
| BseBI | CCWGG | 4 cut(s) | 407, 413, 578, 1132 |
| BseCI | ATCGAT | 1 cut(s) | 1086 |
| BseDI | CCNNGG | 4 cut(s) | 330, 577, 1534, 2023 |
| BseGI | GGATG | 7 cut(s) | 142, 259, 340, 696, 811, 1023, 1529 |
| BseJI | GATNNNNATC | 4 cut(s) | 206, 471, 1226, 1430 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 243, 412, 619, 656, 985, 1604, 2025 |
| BseMI | GCAATG | 1 cut(s) | 970 |
| BseMII | CTCAG | 5 cut(s) | 720, 1269, 1308, 1890, 1914 |
| BseNI | ACTGG | 6 cut(s) | 308, 486, 1067, 1214, 1641, 1932 |
| BseRI | GAGGAG | 1 cut(s) | 226 |
| BseXI | GCAGC | 3 cut(s) | 452, 894, 916 |
| BsgI | GTGCAG | 3 cut(s) | 706, 990, 1566 |
| BshFI | GGCC | 1 cut(s) | 1249 |
| BshNI | GGYRCC | 2 cut(s) | 1621, 1933 |
| BshVI | ATCGAT | 1 cut(s) | 1086 |
| BsiSI | CCGG | 3 cut(s) | 631, 1740, 1964 |
| BslFI | GGGAC | 2 cut(s) | 381, 1193 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 243, 412, 619, 656, 985, 1604, 2025 |
| BsmAI | GTCTC | 1 cut(s) | 1158 |
| BsmFI | GGGAC | 2 cut(s) | 381, 1193 |
| BsnI | GGCC | 1 cut(s) | 1249 |
| Bsp13I | TCCGGA | 2 cut(s) | 630, 1739 |
| Bsp1407I | TGTACA | 1 cut(s) | 96 |
| BspANI | GGCC | 1 cut(s) | 1249 |
| BspCNI | CTCAG | 5 cut(s) | 721, 1268, 1309, 1889, 1913 |
| BspDI | ATCGAT | 1 cut(s) | 1086 |
| BspEI | TCCGGA | 2 cut(s) | 630, 1739 |
| BspLI | GGNNCC | 3 cut(s) | 635, 1623, 1935 |
| BspMAI | CTGCAG | 1 cut(s) | 1490 |
| BspMI | ACCTGC | 1 cut(s) | 1493 |
| BspPI | GGATC | 9 cut(s) | 14, 262, 320, 604, 628, 641, 838, 1501, 1579 |
| BspT107I | GGYRCC | 2 cut(s) | 1621, 1933 |
| BsrDI | GCAATG | 1 cut(s) | 970 |
| BsrGI | TGTACA | 1 cut(s) | 96 |
| BsrI | ACTGG | 6 cut(s) | 308, 486, 1067, 1214, 1641, 1932 |
| BssECI | CCNNGG | 4 cut(s) | 330, 577, 1534, 2023 |
| BssT1I | CCWWGG | 1 cut(s) | 2023 |
| Bst2UI | CCWGG | 4 cut(s) | 407, 413, 578, 1132 |
| Bst4CI | ACNGT | 5 cut(s) | 195, 928, 1400, 1415, 1607 |
| Bst6I | CTCTTC | 2 cut(s) | 437, 577 |
| BstAUI | TGTACA | 1 cut(s) | 96 |
| BstC8I | GCNNGC | 5 cut(s) | 552, 957, 1009, 1283, 1371 |
| BstDEI | CTNAG | 6 cut(s) | 729, 849, 1255, 1317, 1876, 1900 |
| BstF5I | GGATG | 7 cut(s) | 142, 259, 340, 696, 811, 1023, 1529 |
| BstH2I | RGCGCY | 1 cut(s) | 105 |
| BstHHI | GCGC | 4 cut(s) | 104, 904, 1287, 1705 |
| BstMAI | GTCTC | 1 cut(s) | 1158 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1548 |
| BstNI | CCWGG | 4 cut(s) | 407, 413, 578, 1132 |
| BstNSI | RCATGY | 2 cut(s) | 1285, 1596 |
| BstSCI | CCNGG | 4 cut(s) | 405, 411, 576, 1130 |
| BstSFI | CTRYAG | 1 cut(s) | 1486 |
| BstV1I | GCAGC | 3 cut(s) | 452, 894, 916 |
| BstV2I | GAAGAC | 3 cut(s) | 428, 531, 1902 |
| BstX2I | RGATCY | 6 cut(s) | 267, 633, 830, 1141, 1506, 1571 |
| BstYI | RGATCY | 6 cut(s) | 267, 633, 830, 1141, 1506, 1571 |
| Bsu15I | ATCGAT | 1 cut(s) | 1086 |
| Bsu36I | CCTNAGG | 2 cut(s) | 729, 1317 |
| BsuI | GTATCC | 1 cut(s) | 61 |
| BsuRI | GGCC | 1 cut(s) | 1249 |
| BsuTUI | ATCGAT | 1 cut(s) | 1086 |
| BtgZI | GCGATG | 1 cut(s) | 458 |
| BtsCI | GGATG | 7 cut(s) | 142, 259, 340, 696, 811, 1023, 1529 |
| BtsIMutI | CAGTG | 2 cut(s) | 1420, 1854 |
| BveI | ACCTGC | 1 cut(s) | 1493 |
| Cac8I | GCNNGC | 5 cut(s) | 552, 957, 1009, 1283, 1371 |
| CaiI | CAGNNNCTG | 1 cut(s) | 910 |
| CfoI | GCGC | 4 cut(s) | 104, 904, 1287, 1705 |
| Cfr13I | GGNCC | 2 cut(s) | 403, 409 |
| ClaI | ATCGAT | 1 cut(s) | 1086 |
| CseI | GACGC | 1 cut(s) | 1052 |
| CsiI | ACCWGGT | 1 cut(s) | 405 |
| DdeI | CTNAG | 6 cut(s) | 729, 849, 1255, 1317, 1876, 1900 |
| Eam1104I | CTCTTC | 2 cut(s) | 437, 577 |
| EarI | CTCTTC | 2 cut(s) | 437, 577 |
| Eco130I | CCWWGG | 1 cut(s) | 2023 |
| Eco147I | AGGCCT | 1 cut(s) | 1249 |
| Eco47I | GGWCC | 2 cut(s) | 403, 409 |
| Eco47III | AGCGCT | 1 cut(s) | 103 |
| Eco57I | CTGAAG | 1 cut(s) | 846 |
| Eco81I | CCTNAGG | 2 cut(s) | 729, 1317 |
| EcoRI | GAATTC | 2 cut(s) | 1735, 1967 |
| EcoRII | CCWGG | 4 cut(s) | 405, 411, 576, 1130 |
| EcoT14I | CCWWGG | 1 cut(s) | 2023 |
| ErhI | CCWWGG | 1 cut(s) | 2023 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1140, 1172, 1496, 1528, 1632, 1664 |
| FaqI | GGGAC | 2 cut(s) | 381, 1193 |
| FauNDI | CATATG | 1 cut(s) | 594 |
| FbaI | TGATCA | 2 cut(s) | 139, 1425 |
| FblI | GTMKAC | 2 cut(s) | 1410, 1475 |
| Fnu4HI | GCNGC | 3 cut(s) | 441, 905, 908 |
| FokI | GGATG | 7 cut(s) | 149, 266, 347, 703, 818, 1010, 1536 |
| Fsp4HI | GCNGC | 3 cut(s) | 441, 905, 908 |
| FspAI | RTGCGCAY | 1 cut(s) | 1286 |
| FspBI | CTAG | 5 cut(s) | 260, 444, 651, 1347, 1586 |
| FspI | TGCGCA | 1 cut(s) | 1286 |
| GlaI | GCGC | 4 cut(s) | 103, 903, 1286, 1704 |
| GluI | GCNGC | 3 cut(s) | 441, 905, 908 |
| GsuI | CTGGAG | 2 cut(s) | 1197, 1949 |
| HaeII | RGCGCY | 1 cut(s) | 105 |
| HaeIII | GGCC | 1 cut(s) | 1249 |
| HapII | CCGG | 3 cut(s) | 631, 1740, 1964 |
| HgaI | GACGC | 1 cut(s) | 1052 |
| HhaI | GCGC | 4 cut(s) | 104, 904, 1287, 1705 |
| Hin6I | GCGC | 4 cut(s) | 102, 902, 1285, 1703 |
| HinP1I | GCGC | 4 cut(s) | 102, 902, 1285, 1703 |
| HindIII | AAGCTT | 1 cut(s) | 563 |
| HinfI | GANTC | 9 cut(s) | 120, 482, 602, 767, 772, 1472, 1781, 1874, 1954 |
| HpaII | CCGG | 3 cut(s) | 631, 1740, 1964 |
| Hpy166II | GTNNAC | 5 cut(s) | 1411, 1476, 1598, 1610, 1852 |
| Hpy8I | GTNNAC | 5 cut(s) | 1411, 1476, 1598, 1610, 1852 |
| HpyAV | CCTTC | 8 cut(s) | 109, 139, 648, 821, 1260, 1451, 1489, 1514 |
| HpyCH4III | ACNGT | 5 cut(s) | 195, 928, 1400, 1415, 1607 |
| HpyCH4IV | ACGT | 4 cut(s) | 511, 528, 798, 1354 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1548 |
| HpyF3I | CTNAG | 6 cut(s) | 729, 849, 1255, 1317, 1876, 1900 |
| HpySE526I | ACGT | 4 cut(s) | 511, 528, 798, 1354 |
| HspAI | GCGC | 4 cut(s) | 102, 902, 1285, 1703 |
| Kpn2I | TCCGGA | 2 cut(s) | 630, 1739 |
| KpnI | GGTACC | 1 cut(s) | 1625 |
| Ksp22I | TGATCA | 2 cut(s) | 139, 1425 |
| LmnI | GCTCC | 1 cut(s) | 1566 |
| Lsp1109I | GCAGC | 3 cut(s) | 452, 894, 916 |
| LweI | GCATC | 2 cut(s) | 481, 1690 |
| MabI | ACCWGGT | 1 cut(s) | 405 |
| MaeI | CTAG | 5 cut(s) | 260, 444, 651, 1347, 1586 |
| MaeII | ACGT | 4 cut(s) | 511, 528, 798, 1354 |
| MaeIII | GTNAC | 5 cut(s) | 89, 124, 638, 659, 1078 |
| MflI | RGATCY | 6 cut(s) | 267, 633, 830, 1141, 1506, 1571 |
| MluCI | AATT | 9 cut(s) | 79, 288, 389, 705, 1112, 1626, 1727, 1735, 1967 |
| MlyI | GAGTC | 2 cut(s) | 1481, 1868 |
| MroI | TCCGGA | 2 cut(s) | 630, 1739 |
| MseI | TTAA | 5 cut(s) | 176, 569, 1071, 1097, 1557 |
| MslI | CAYNNNNRTG | 2 cut(s) | 131, 1605 |
| MspA1I | CMGCKG | 2 cut(s) | 907, 1697 |
| MspI | CCGG | 3 cut(s) | 631, 1740, 1964 |
| MspR9I | CCNGG | 4 cut(s) | 407, 413, 578, 1132 |
| MvaI | CCWGG | 4 cut(s) | 407, 413, 578, 1132 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1548 |
| NdeI | CATATG | 1 cut(s) | 594 |
| NlaIV | GGNNCC | 3 cut(s) | 635, 1623, 1935 |
| NmuCI | GTSAC | 5 cut(s) | 89, 124, 638, 659, 1078 |
| NsbI | TGCGCA | 1 cut(s) | 1286 |
| NspI | RCATGY | 2 cut(s) | 1285, 1596 |
| PaeI | GCATGC | 1 cut(s) | 1285 |
| PaqCI | CACCTGC | 1 cut(s) | 1493 |
| PceI | AGGCCT | 1 cut(s) | 1249 |
| PciI | ACATGT | 1 cut(s) | 1592 |
| PfeI | GAWTC | 7 cut(s) | 120, 482, 602, 767, 772, 1781, 1954 |
| PflFI | GACNNNGTC | 1 cut(s) | 407 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 619, 985 |
| PfoI | TCCNGGA | 1 cut(s) | 411 |
| PkrI | GCNGC | 3 cut(s) | 442, 906, 909 |
| PleI | GAGTC | 2 cut(s) | 1480, 1868 |
| PpsI | GAGTC | 2 cut(s) | 1480, 1868 |
| PscI | ACATGT | 1 cut(s) | 1592 |
| PshBI | ATTAAT | 1 cut(s) | 176 |
| Psp6I | CCWGG | 4 cut(s) | 405, 411, 576, 1130 |
| PspGI | CCWGG | 4 cut(s) | 405, 411, 576, 1130 |
| PspN4I | GGNNCC | 3 cut(s) | 635, 1623, 1935 |
| PspPI | GGNCC | 2 cut(s) | 403, 409 |
| PstI | CTGCAG | 1 cut(s) | 1490 |
| PstNI | CAGNNNCTG | 1 cut(s) | 910 |
| PsuI | RGATCY | 6 cut(s) | 267, 633, 830, 1141, 1506, 1571 |
| PsyI | GACNNNGTC | 1 cut(s) | 407 |
| PvuII | CAGCTG | 2 cut(s) | 907, 1697 |
| RseI | CAYNNNNRTG | 2 cut(s) | 131, 1605 |
| SaqAI | TTAA | 5 cut(s) | 176, 569, 1071, 1097, 1557 |
| SatI | GCNGC | 3 cut(s) | 441, 905, 908 |
| Sau96I | GGNCC | 2 cut(s) | 403, 409 |
| ScaI | AGTACT | 1 cut(s) | 1269 |
| SchI | GAGTC | 2 cut(s) | 1481, 1868 |
| ScrFI | CCNGG | 4 cut(s) | 407, 413, 578, 1132 |
| SexAI | ACCWGGT | 1 cut(s) | 405 |
| SfaNI | GCATC | 2 cut(s) | 481, 1690 |
| SfcI | CTRYAG | 1 cut(s) | 1486 |
| SinI | GGWCC | 2 cut(s) | 403, 409 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 131, 1605 |
| SmlI | CTYRAG | 1 cut(s) | 1972 |
| SmoI | CTYRAG | 1 cut(s) | 1972 |
| SpeI | ACTAGT | 1 cut(s) | 259 |
| SphI | GCATGC | 1 cut(s) | 1285 |
| Sse9I | AATT | 9 cut(s) | 79, 288, 389, 705, 1112, 1626, 1727, 1735, 1967 |
| SseBI | AGGCCT | 1 cut(s) | 1249 |
| SspI | AATATT | 1 cut(s) | 1312 |
| SspMI | CTAG | 5 cut(s) | 260, 444, 651, 1347, 1586 |
| StuI | AGGCCT | 1 cut(s) | 1249 |
| StyD4I | CCNGG | 4 cut(s) | 405, 411, 576, 1130 |
| StyI | CCWWGG | 1 cut(s) | 2023 |
| TaaI | ACNGT | 5 cut(s) | 195, 928, 1400, 1415, 1607 |
| TaiI | ACGT | 4 cut(s) | 514, 531, 801, 1357 |
| TaqI | TCGA | 9 cut(s) | 189, 197, 273, 324, 465, 753, 770, 1086, 1302 |
| TasI | AATT | 9 cut(s) | 79, 288, 389, 705, 1112, 1626, 1727, 1735, 1967 |
| TatI | WGTACW | 2 cut(s) | 96, 1267 |
| TfiI | GAWTC | 7 cut(s) | 120, 482, 602, 767, 772, 1781, 1954 |
| Tru1I | TTAA | 5 cut(s) | 176, 569, 1071, 1097, 1557 |
| Tru9I | TTAA | 5 cut(s) | 176, 569, 1071, 1097, 1557 |
| TscAI | CASTG | 2 cut(s) | 1420, 1861 |
| TseFI | GTSAC | 5 cut(s) | 89, 124, 638, 659, 1078 |
| TseI | GCWGC | 3 cut(s) | 440, 904, 907 |
| Tsp45I | GTSAC | 5 cut(s) | 89, 124, 638, 659, 1078 |
| TspGWI | ACGGA | 1 cut(s) | 626 |
| TspRI | CASTG | 2 cut(s) | 1420, 1861 |
| Tth111I | GACNNNGTC | 1 cut(s) | 407 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 619, 985 |
| VpaK11BI | GGWCC | 2 cut(s) | 403, 409 |
| VspI | ATTAAT | 1 cut(s) | 176 |
| XapI | RAATTY | 5 cut(s) | 288, 389, 705, 1735, 1967 |
| XbaI | TCTAGA | 1 cut(s) | 1346 |
| XceI | RCATGY | 2 cut(s) | 1285, 1596 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 247, 1571 |
| XmiI | GTMKAC | 2 cut(s) | 1410, 1475 |
| XspI | CTAG | 5 cut(s) | 260, 444, 651, 1347, 1586 |
| ZrmI | AGTACT | 1 cut(s) | 1269 |