FvH4_5g19920

G-quadruplex DNA unwinding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000050
Physical Location & Seq
Reverse (-)
11724307 .. 11727398
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19920.t1

Sequence Viewer

Length: 1440 bp
ATGGCACCAGAAAACAAAAAAGCGACACCAATTCGCAGTATAAAAGCCCACCAGCTCAATTACAAGATCACTGTTCGTGTTGGGAGGATATGGAGACCGAAAAAATATGACAGTGAAGATTATGATGGCCTTCATTATATTCTGATTGATGAAAATGGAGATACAATTGAGGCTATCATTGAGGAAGAATACTGCGATTATGTGACTGAAAAGATGAAAGAAGGAGAAATCTATAACATTTATAAATTTCACAATAGAAGAGATCCTTTTAATATTAGAGTAACCAACCACCCCATCCAGCTTCTCTTCAACAGATACACCATATTTGAGCCAACCGGGAAAACTGTGCCTTCACCTCCAAGATATGGATTTCACCTTCTAGAATTTCATGAATTCACTGCCCAACTTGATAAACAAGATGTCTATGCAGATATTTATGGTTGCATCAAACACATATCACATGAATGTGAAGTTTTTGTGCCTGAGAAAAAAAAGATGGTGCCTGTACGCAATATTGTTCTTGCGAACCTGAGGAGAGAAGAACTACAAGTCTCACTTTGGGGTGACATAAGAAACAAAATTGATGTGAAAGCAGTTGACGAGTTACCATCAGCAACATTTGCTGTCATCACCAGCTTAAAGGCAACAAATCTCAAAGGAGAAATCATAGCAAGAAGCACAAATCATACATGCATTTTCATCAACCCACATGTTGATAATGAAGAAGAATACAAAGCAGAGTTTTCAAAGGCAGGAGATAAAGTAAGGGTATCAAAACAGGAAATGTCACGAGGACGGGAAATGAAAACAGTGACTCAGTTATATGAACTAGATCCAAAAACTTACAAAGAATCTCAGAAGAATGTGACATTTCCCTGCAAAGCATCAATTGCGAGATATTTGGTGCAGAAAGGCTGGTGGTACAAACGTTGTTCATCGCGAAATTGCTTCAAAGAACTAAAAGAGAATAAAGATAGCACTGACTTAATATGCAAAGAACATGGCGTCCAAACACCTCTGCCATGGTACCGTGCATCTATGGTCATTCAAGATGATGAAAATGAAGCAACTGTTACACTTATGGGAGCGCAAGCGGAGCAGCTCTTTGGTTCCTCCTGTGAAAATTTACTGAACAAAACACCCCACGAAGCGCTACCACAAGAAATTCAAAACACAATTGGTCAGATCCACGTGTTTGAGTTGGGATTCAACAATTATGGTCACCTATTAGTAAAAGGCATTGTCTCAGATCAAATAATTCCAAAGCCAGCTACAGAACTGCATCCAGCTACAGAAACACCAAAGAAAATGTCTGAAAGAAAAAGAGAAATAGATGGAACTGCAAAGGCATTATTCGCATCAGAACCACAAAAGAAATCAAAAAGGCAAAACAATGAAGGTACATCATCCTCACCAACCAAGGAGCTGAAAAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

480

Amino Acids

55.25

Weight (kDa)

8.18

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF223 PF02721 9 - 110 4.9e-14 Domain of unknown function DUF223
Rep_fac-A_C PF08646 293 - 398 2.9e-07 Replication factor-A C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000050)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_2g06412 FvH4_2g08146 FvH4_2g10321 FvH4_2g13511 FvH4_2g20780 FvH4_2g20781 FvH4_2g22171 FvH4_2g25221 FvH4_3g03500 FvH4_3g07130 FvH4_3g10140 FvH4_3g10141 FvH4_3g24350 FvH4_4g08242 FvH4_4g13410 FvH4_4g18140 FvH4_4g22470 FvH4_5g19920 FvH4_5g21501 FvH4_5g26612 FvH4_5g29621 FvH4_5g31990 FvH4_6g00280 FvH4_6g00280 FvH4_6g07190 FvH4_6g07190 FvH4_6g07190 FvH4_6g07190 FvH4_6g07190 FvH4_6g08820 FvH4_6g29600 FvH4_6g30401 FvH4_6g33630 FvH4_7g08310 FvH4_7g08311 FvH4_7g10871 FvH4_7g18890 FvH4_7g18891
malus_domestica MD01G1202900.v1.1 MD02G1249900.v1.1 MD03G1022200.v1.1 MD03G1164900.v1.1 MD04G1002000.v1.1 MD05G1167800.v1.1 MD05G1167900.v1.1 MD05G1202200.v1.1 MD05G1215800.v1.1 MD05G1328800.v1.1 MD07G1020000.v1.1 MD07G1020100.v1.1 MD07G1084700.v1.1 MD08G1007900.v1.1 MD08G1229500.v1.1 MD09G1016000.v1.1 MD09G1184200.v1.1 MD10G1198800.v1.1 MD10G1198900.v1.1 MD11G1203900.v1.1 MD12G1081100.v1.1 MD12G1101700.v1.1 MD13G1126700.v1.1 MD13G1158300.v1.1 MD13G1161500.v1.1 MD14G1083800.v1.1 MD14G1125700.v1.1 MD14G1159700.v1.1 MD14G1159800.v1.1 MD17G1252600.v1.1 MD17G1261900.v1.1 MD17G1262000.v1.1
pyrus_communis pycom01g12270 pycom02g14690 pycom02g17560 pycom02g26880 pycom02g26890 pycom03g13090 pycom03g19990 pycom03g20000 pycom04g00130 pycom04g05050 pycom04g10460 pycom05g27190 pycom07g05970 pycom08g02820 pycom08g11570 pycom09g07420 pycom09g07430 pycom09g08580 pycom10g06760 pycom10g11210 pycom10g11220 pycom11g14380 pycom11g21990 pycom12419g00230 pycom12494g00020 pycom14g06150 pycom15g09750 pycom15g20130 pycom15g27020 pycom15g27230 pycom16g17550 pycom16g18200 pycom5153684g00260 pycom520g00040
rosa_chinensis RchiOBHm_Chr1g0320331 RchiOBHm_Chr1g0329871 RchiOBHm_Chr1g0339991 RchiOBHm_Chr1g0371171 RchiOBHm_Chr1g0378741 RchiOBHm_Chr1g0378751 RchiOBHm_Chr1g0379271 RchiOBHm_Chr2g0122381 RchiOBHm_Chr2g0133251 RchiOBHm_Chr2g0133271 RchiOBHm_Chr2g0133331 RchiOBHm_Chr2g0135141 RchiOBHm_Chr2g0141711 RchiOBHm_Chr2g0145531 RchiOBHm_Chr2g0149141 RchiOBHm_Chr2g0149151 RchiOBHm_Chr2g0150581 RchiOBHm_Chr2g0159361 RchiOBHm_Chr2g0162161 RchiOBHm_Chr2g0174211 RchiOBHm_Chr3g0484061 RchiOBHm_Chr3g0491361 RchiOBHm_Chr4g0413141 RchiOBHm_Chr4g0444601 RchiOBHm_Chr5g0004901 RchiOBHm_Chr5g0004911 RchiOBHm_Chr5g0010461 RchiOBHm_Chr5g0027941 RchiOBHm_Chr5g0028311 RchiOBHm_Chr5g0030141 RchiOBHm_Chr5g0035621 RchiOBHm_Chr5g0050871 RchiOBHm_Chr5g0053321 RchiOBHm_Chr5g0060091 RchiOBHm_Chr5g0063301 RchiOBHm_Chr5g0066571 RchiOBHm_Chr5g0067561 RchiOBHm_Chr6g0262741 RchiOBHm_Chr7g0184001 RchiOBHm_Chr7g0206181 RchiOBHm_Chr7g0212031 RchiOBHm_Chr7g0214521 RchiOBHm_Chr7g0230521 RchiOBHm_Chr7g0230621
rosa_laevigata RLG00000014424 RLG00000022069 RLG00000036206
rosa_multiflora Rmu_sc0000121.1_g000006 Rmu_sc0000271.1_g000001 Rmu_sc0000293.1_g000010 Rmu_sc0000309.1_g000052 Rmu_sc0000556.1_g000045 Rmu_sc0000837.1_g000079 Rmu_sc0001069.1_g000026 Rmu_sc0001198.1_g000001 Rmu_sc0001353.1_g000031 Rmu_sc0001461.1_g000107 Rmu_sc0002011.1_g000038 Rmu_sc0003270.1_g000034 Rmu_sc0003874.1_g000017 Rmu_sc0004729.1_g000006 Rmu_sc0007116.1_g000001 Rmu_sc0009087.1_g000019 Rmu_sc0009877.1_g000004 Rmu_sc0015060.1_g000008 Rmu_sc0016097.1_g000001
rosa_roxburghii Rroxscaffold_1G00024140 Rroxscaffold_1G00027240 Rroxscaffold_1G00030710 Rroxscaffold_1G00035010 Rroxscaffold_1G00050490 Rroxscaffold_1G00069340 Rroxscaffold_1G00072870 Rroxscaffold_2G00078360 Rroxscaffold_2G00098490 Rroxscaffold_2G00106110 Rroxscaffold_2G00109450 Rroxscaffold_2G00125260 Rroxscaffold_2G00154260 Rroxscaffold_3G00221290 Rroxscaffold_3G00221300 Rroxscaffold_3G00232770 Rroxscaffold_3G00249670 Rroxscaffold_3G00255640 Rroxscaffold_3G00255820 Rroxscaffold_3G00255870 Rroxscaffold_3G00258160 Rroxscaffold_3G00258170 Rroxscaffold_3G00265290 Rroxscaffold_4G00320550 Rroxscaffold_4G00322930 Rroxscaffold_4G00331930 Rroxscaffold_4G00332460 Rroxscaffold_5G00337730 Rroxscaffold_5G00364590 Rroxscaffold_5G00365660 Rroxscaffold_5G00373900 Rroxscaffold_6G00395750 Rroxscaffold_6G00397090 Rroxscaffold_6G00407660 Rroxscaffold_6G00421590 Rroxscaffold_7G00156820 Rroxscaffold_7G00174040 Rroxscaffold_7G00175610 Rroxscaffold_7G00182780 Rroxscaffold_7G00210390 Rroxscaffold_7G00210490 Rroxscaffold_7G00214770 Rroxscaffold_7G00215580 Rroxscaffold_7G00215690
rosa_rugosa Rorug01G0099600 Rorug01G0127300 Rorug02G0145300 Rorug02G0145400 Rorug02G0145500.1 Rorug02G0145600 Rorug02G0145700 Rorug02G0145700 Rorug02G0278400 Rorug02G0444700 Rorug02G0542800 Rorug02G0547200 Rorug04G0015900 Rorug04G0082400 Rorug04G0297900 Rorug05G0078200 Rorug05G0207900 Rorug05G0277000 Rorug05G0528600 Rorug05G0528700 Rorug05G0528800 Rorug06G0001000 Rorug06G0246500 Rorug06G0246600 Rorug06G0246700 Rorug07G0189200 Rorug07G0189300 Rorug07G0189400 Rorug07G0189500 Rorug07G0212200 Rorug07G0212200 Rorug07G0221500 Rorug07G0248800
rosa_samantha Rh1AG011600 Rh1AG052100 Rh1AG163900 Rh1BG006600 Rh1BG025100 Rh1BG025200 Rh1BG032500 Rh1BG374400 Rh1BG374500 Rh1CG153000 Rh1DG148800 Rh1DG160400 Rh1DG181900 Rh1DG405100 Rh1DG445600 Rh2AG005600 Rh2AG137100 Rh2AG150500 Rh2AG150600 Rh2AG243200 Rh2AG264300 Rh2AG349900 Rh2AG387700 Rh2AG485100 Rh2CG115600 Rh2CG269600 Rh2CG294000 Rh2CG294100 Rh2CG317700 Rh2CG375000 Rh2CG471200 Rh2CG611400 Rh2DG070000 Rh2DG073900 Rh2DG234600 Rh3AG258200 Rh3CG251500 Rh3CG283900 Rh3CG331200 Rh3CG371500 Rh3DG077300 Rh3DG185900 Rh3DG332700 Rh3DG360400 Rh4AG105100 Rh4BG191100 Rh4DG139800 Rh4DG186000 Rh4DG187900 Rh5AG302000 Rh5AG431600 Rh5CG090000 Rh5CG214700 Rh5CG299100 Rh5CG561200 Rh5DG205600 Rh5DG244500 Rh5DG257300 Rh5DG257400 Rh5DG325900 Rh5DG335500 Rh5DG359300 Rh5DG364600 Rh5DG388600 Rh6AG013900 Rh6BG045400 Rh6CG031300 Rh6CG069100 Rh6CG157500 Rh6DG029800 Rh6DG066100 Rh6DG260800 Rh6DG320100 Rh7AG007600 Rh7BG046100 Rh7BG053900 Rh7BG204900 Rh7BG322600 Rh7BG421200 Rh7DG063200 Rh7DG233200 Rh7DG287000 Rh7DG289600 Rh7DG323500 Rh7DG323800 Rh7DG323900
rosa_wichuraiana Rw0G001160 Rw0G003580 Rw0G003590 Rw0G005910 Rw0G006230 Rw0G010240 Rw0G011660 Rw0G015630 Rw0G021440 Rw0G023690 Rw1G000060 Rw1G006170 Rw1G007940 Rw1G008630 Rw1G009460 Rw1G013800 Rw1G015100 Rw1G015710 Rw1G016040 Rw1G024780 Rw2G004590 Rw2G026770 Rw2G030550 Rw2G036430 Rw3G011440 Rw3G020600 Rw3G020710 Rw3G025390 Rw3G026320 Rw4G003380 Rw4G016140 Rw4G018350 Rw4G027460 Rw5G004690 Rw5G011140 Rw5G011820 Rw5G016560 Rw5G023230 Rw5G027290 Rw5G028520 Rw5G040540 Rw5G046050 Rw6G013650 Rw6G018020 Rw6G019800 Rw6G023450 Rw7G027610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
Acc65I GGTACC 1 cut(s) 1026
AccB1I GGYRCC 3 cut(s) 4, 499, 1026
AccB7I CCANNNNNTGG 1 cut(s) 365
AccII CGCG 1 cut(s) 940
AciI CCGC 1 cut(s) 1094
AclI AACGTT 1 cut(s) 928
AclWI GGATC 3 cut(s) 257, 827, 1180
AcsI RAATTY 5 cut(s) 245, 383, 392, 1123, 1164
AcvI CACGTG 1 cut(s) 1192
AcyI GRCGYC 1 cut(s) 1005
AfaI GTAC 4 cut(s) 507, 923, 1028, 1402
AfeI AGCGCT 1 cut(s) 1152
AfiI CCNNNNNNNGG 1 cut(s) 365
AflIII ACRYGT 2 cut(s) 709, 1191
AgsI TTSAA 6 cut(s) 310, 747, 952, 1049, 1169, 1210
AloI GAACNNNNNNTCC 2 cut(s) 990, 1022
AluBI AGCT 7 cut(s) 55, 301, 636, 1102, 1271, 1289, 1426
AluI AGCT 7 cut(s) 55, 301, 636, 1102, 1271, 1289, 1426
Alw26I GTCTC 3 cut(s) 88, 556, 1249
AlwI GGATC 3 cut(s) 257, 827, 1180
Aor51HI AGCGCT 1 cut(s) 1152
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 1099
ApoI RAATTY 5 cut(s) 245, 383, 392, 1123, 1164
ArsI GACNNNNNNTTYG 2 cut(s) 1295, 1327
Asp718I GGTACC 1 cut(s) 1026
AspLEI GCGC 2 cut(s) 1090, 1153
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 6 cut(s) 345, 365, 575, 622, 1214, 1404
AxyI CCTNAGG 1 cut(s) 530
BaeI ACNNNNGTAYC 2 cut(s) 913, 946
BanI GGYRCC 3 cut(s) 4, 499, 1026
BauI CACGAG 1 cut(s) 789
BbrPI CACGTG 1 cut(s) 1192
BbvI GCAGC 1 cut(s) 1111
BccI CCATC 5 cut(s) 119, 302, 490, 616, 1328
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 3 cut(s) 88, 556, 1249
BfaI CTAG 2 cut(s) 380, 830
BfmI CTRYAG 2 cut(s) 1272, 1290
BfoI RGCGCY 1 cut(s) 1154
BisI GCNGC 1 cut(s) 1100
BlsI GCNGC 1 cut(s) 1101
Bme1390I CCNGG 1 cut(s) 337
BmiI GGNNCC 4 cut(s) 6, 501, 1028, 1111
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 5 cut(s) 453, 893, 1043, 1291, 1367
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 1192
BsaHI GRCGYC 1 cut(s) 1005
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 1022, 1419
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse21I CCTNAGG 1 cut(s) 530
BseDI CCNNGG 2 cut(s) 1022, 1419
BseGI GGATG 3 cut(s) 294, 1282, 1406
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMII CTCAG 5 cut(s) 474, 521, 830, 869, 1260
BseRI GAGGAG 1 cut(s) 547
BseXI GCAGC 1 cut(s) 1111
BsgI GTGCAG 1 cut(s) 926
Bsh1236I CGCG 1 cut(s) 940
BshFI GGCC 1 cut(s) 129
BshNI GGYRCC 3 cut(s) 4, 499, 1026
BsiSI CCGG 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 3 cut(s) 88, 556, 1249
BsnI GGCC 1 cut(s) 129
Bso31I GGTCTC 1 cut(s) 88
Bsp143I GATC 5 cut(s) 66, 262, 832, 1185, 1249
Bsp19I CCATGG 1 cut(s) 1022
Bsp68I TCGCGA 1 cut(s) 940
BspACI CCGC 1 cut(s) 1094
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 5 cut(s) 475, 522, 829, 868, 1259
BspFNI CGCG 1 cut(s) 940
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 4 cut(s) 6, 501, 1028, 1111
BspPI GGATC 3 cut(s) 257, 827, 1180
BspT107I GGYRCC 3 cut(s) 4, 499, 1026
BspTNI GGTCTC 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 1022, 1419
BssMI GATC 5 cut(s) 66, 262, 832, 1185, 1249
BssNI GRCGYC 1 cut(s) 1005
BssSI CACGAG 1 cut(s) 789
BssT1I CCWWGG 2 cut(s) 1022, 1419
Bst2BI CACGAG 1 cut(s) 789
Bst4CI ACNGT 6 cut(s) 73, 113, 346, 811, 1031, 1072
Bst6I CTCTTC 2 cut(s) 253, 311
BstACI GRCGYC 1 cut(s) 1005
BstAPI GCANNNNNTGC 2 cut(s) 620, 890
BstBAI YACGTR 1 cut(s) 1192
BstC8I GCNNGC 2 cut(s) 1092, 1269
BstDEI CTNAG 5 cut(s) 483, 530, 816, 855, 1246
BstDSI CCRYGG 1 cut(s) 1022
BstEII GGTNACC 1 cut(s) 1220
BstF5I GGATG 3 cut(s) 294, 1282, 1406
BstFNI CGCG 1 cut(s) 940
BstH2I RGCGCY 1 cut(s) 1154
BstHHI GCGC 2 cut(s) 1090, 1153
BstKTI GATC 5 cut(s) 69, 265, 835, 1188, 1252
BstMAI GTCTC 3 cut(s) 88, 556, 1249
BstMBI GATC 5 cut(s) 66, 262, 832, 1185, 1249
BstMWI GCNNNNNNNGC 4 cut(s) 620, 890, 1096, 1355
BstNSI RCATGY 2 cut(s) 693, 713
BstPI GGTNACC 1 cut(s) 1220
BstSCI CCNGG 1 cut(s) 335
BstSFI CTRYAG 2 cut(s) 1272, 1290
BstUI CGCG 1 cut(s) 940
BstV1I GCAGC 1 cut(s) 1111
BstX2I RGATCY 3 cut(s) 262, 832, 1185
BstYI RGATCY 3 cut(s) 262, 832, 1185
Bsu36I CCTNAGG 1 cut(s) 530
BsuRI GGCC 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 1022
BtgZI GCGATG 1 cut(s) 921
BtsCI GGATG 3 cut(s) 294, 1282, 1406
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 5 cut(s) 69, 118, 396, 816, 978
BtuMI TCGCGA 1 cut(s) 940
Cac8I GCNNGC 2 cut(s) 1092, 1269
CciI TCATGA 1 cut(s) 388
CfoI GCGC 2 cut(s) 1090, 1153
CseI GACGC 1 cut(s) 994
Csp6I GTAC 4 cut(s) 506, 922, 1027, 1401
CviAII CATG 6 cut(s) 389, 461, 690, 710, 1001, 1023
CviQI GTAC 4 cut(s) 506, 922, 1027, 1401
DdeI CTNAG 5 cut(s) 483, 530, 816, 855, 1246
DpnI GATC 5 cut(s) 68, 264, 834, 1187, 1251
DpnII GATC 5 cut(s) 66, 262, 832, 1185, 1249
Eam1104I CTCTTC 2 cut(s) 253, 311
EarI CTCTTC 2 cut(s) 253, 311
Eco130I CCWWGG 2 cut(s) 1022, 1419
Eco31I GGTCTC 1 cut(s) 88
Eco47III AGCGCT 1 cut(s) 1152
Eco72I CACGTG 1 cut(s) 1192
Eco81I CCTNAGG 1 cut(s) 530
Eco91I GGTNACC 1 cut(s) 1220
EcoO65I GGTNACC 1 cut(s) 1220
EcoRI GAATTC 1 cut(s) 392
EcoT14I CCWWGG 2 cut(s) 1022, 1419
EcoT22I ATGCAT 1 cut(s) 695
ErhI CCWWGG 2 cut(s) 1022, 1419
FaeI CATG 6 cut(s) 392, 464, 693, 713, 1004, 1026
FalI AAGNNNNNCTT 4 cut(s) 250, 282, 540, 572
FatI CATG 6 cut(s) 388, 460, 689, 709, 1000, 1022
Fnu4HI GCNGC 1 cut(s) 1100
FokI GGATG 3 cut(s) 281, 1269, 1393
Fsp4HI GCNGC 1 cut(s) 1100
FspBI CTAG 2 cut(s) 380, 830
GlaI GCGC 2 cut(s) 1089, 1152
GluI GCNGC 1 cut(s) 1100
HaeII RGCGCY 1 cut(s) 1154
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 336
HgaI GACGC 1 cut(s) 994
HhaI GCGC 2 cut(s) 1090, 1153
Hin1I GRCGYC 1 cut(s) 1005
Hin1II CATG 6 cut(s) 392, 464, 693, 713, 1004, 1026
Hin6I GCGC 2 cut(s) 1088, 1151
HinP1I GCGC 2 cut(s) 1088, 1151
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 3 cut(s) 814, 851, 1206
HpaII CCGG 1 cut(s) 336
HphI GGTGA 6 cut(s) 345, 365, 575, 622, 1214, 1404
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 6 cut(s) 144, 858, 1185, 1249, 1315, 1363
Hpy188III TCNNGA 5 cut(s) 380, 389, 789, 939, 1049
Hpy8I GTNNAC 1 cut(s) 598
HpyAV CCTTC 5 cut(s) 140, 215, 360, 386, 1391
HpyCH4III ACNGT 6 cut(s) 73, 113, 346, 811, 1031, 1072
HpyCH4IV ACGT 2 cut(s) 928, 1191
HpyCH4V TGCA 9 cut(s) 428, 444, 693, 879, 907, 993, 1034, 1282, 1343
HpyF10VI GCNNNNNNNGC 4 cut(s) 620, 890, 1096, 1355
HpyF3I CTNAG 5 cut(s) 483, 530, 816, 855, 1246
HpySE526I ACGT 2 cut(s) 928, 1191
Hsp92I GRCGYC 1 cut(s) 1005
Hsp92II CATG 6 cut(s) 392, 464, 693, 713, 1004, 1026
HspAI GCGC 2 cut(s) 1088, 1151
KpnI GGTACC 1 cut(s) 1030
Kzo9I GATC 5 cut(s) 66, 262, 832, 1185, 1249
LmnI GCTCC 3 cut(s) 1085, 1096, 1423
Lsp1109I GCAGC 1 cut(s) 1111
LweI GCATC 5 cut(s) 453, 893, 1043, 1291, 1367
MaeI CTAG 2 cut(s) 380, 830
MaeII ACGT 2 cut(s) 928, 1191
MaeIII GTNAC 9 cut(s) 202, 280, 563, 603, 786, 811, 865, 1072, 1220
MalI GATC 5 cut(s) 68, 264, 834, 1187, 1251
MboI GATC 5 cut(s) 66, 262, 832, 1185, 1249
MboII GAAGA 8 cut(s) 128, 197, 270, 298, 551, 734, 737, 871
MfeI CAATTG 3 cut(s) 165, 888, 1176
MflI RGATCY 3 cut(s) 262, 832, 1185
MlyI GAGTC 1 cut(s) 808
MnlI CCTC 9 cut(s) 78, 163, 175, 366, 525, 785, 1026, 1123, 1420
Mph1103I ATGCAT 1 cut(s) 695
MseI TTAA 3 cut(s) 270, 638, 986
MslI CAYNNNNRTG 2 cut(s) 463, 465
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 337
MunI CAATTG 3 cut(s) 165, 888, 1176
MvnI CGCG 1 cut(s) 940
MwoI GCNNNNNNNGC 4 cut(s) 620, 890, 1096, 1355
NciI CCSGG 1 cut(s) 337
NcoI CCATGG 1 cut(s) 1022
NdeII GATC 5 cut(s) 66, 262, 832, 1185, 1249
NlaIII CATG 6 cut(s) 392, 464, 693, 713, 1004, 1026
NlaIV GGNNCC 4 cut(s) 6, 501, 1028, 1111
NmuCI GTSAC 6 cut(s) 202, 563, 786, 811, 865, 1220
NruI TCGCGA 1 cut(s) 940
NsiI ATGCAT 1 cut(s) 695
NspI RCATGY 2 cut(s) 693, 713
PagI TCATGA 1 cut(s) 388
PciI ACATGT 1 cut(s) 709
PfeI GAWTC 2 cut(s) 851, 1206
PflMI CCANNNNNTGG 1 cut(s) 365
PkrI GCNGC 1 cut(s) 1101
PleI GAGTC 1 cut(s) 808
PmaCI CACGTG 1 cut(s) 1192
PmlI CACGTG 1 cut(s) 1192
PpsI GAGTC 1 cut(s) 808
Ppu21I YACGTR 1 cut(s) 1192
PscI ACATGT 1 cut(s) 709
PsiI TTATAA 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 928
PspCI CACGTG 1 cut(s) 1192
PspEI GGTNACC 1 cut(s) 1220
PspN4I GGNNCC 4 cut(s) 6, 501, 1028, 1111
PsuI RGATCY 3 cut(s) 262, 832, 1185
RruI TCGCGA 1 cut(s) 940
RsaI GTAC 4 cut(s) 507, 923, 1028, 1402
RsaNI GTAC 4 cut(s) 506, 922, 1027, 1401
RseI CAYNNNNRTG 2 cut(s) 463, 465
SaqAI TTAA 3 cut(s) 270, 638, 986
SatI GCNGC 1 cut(s) 1100
Sau3AI GATC 5 cut(s) 66, 262, 832, 1185, 1249
SchI GAGTC 1 cut(s) 808
ScrFI CCNGG 1 cut(s) 337
SfaNI GCATC 5 cut(s) 453, 893, 1043, 1291, 1367
SfcI CTRYAG 2 cut(s) 1272, 1290
SmiMI CAYNNNNRTG 2 cut(s) 463, 465
SsiI CCGC 1 cut(s) 1094
SspI AATATT 2 cut(s) 274, 514
SspMI CTAG 2 cut(s) 380, 830
StyD4I CCNGG 1 cut(s) 335
StyI CCWWGG 2 cut(s) 1022, 1419
TaaI ACNGT 6 cut(s) 73, 113, 346, 811, 1031, 1072
TaiI ACGT 2 cut(s) 931, 1194
TaqII GACCGA 1 cut(s) 112
TfiI GAWTC 2 cut(s) 851, 1206
Tru1I TTAA 3 cut(s) 270, 638, 986
Tru9I TTAA 3 cut(s) 270, 638, 986
TscAI CASTG 5 cut(s) 76, 118, 403, 816, 985
TseFI GTSAC 6 cut(s) 202, 563, 786, 811, 865, 1220
TseI GCWGC 1 cut(s) 1099
Tsp45I GTSAC 6 cut(s) 202, 563, 786, 811, 865, 1220
TspRI CASTG 5 cut(s) 76, 118, 403, 816, 985
Van91I CCANNNNNTGG 1 cut(s) 365
XapI RAATTY 5 cut(s) 245, 383, 392, 1123, 1164
XbaI TCTAGA 1 cut(s) 379
XceI RCATGY 2 cut(s) 693, 713
XspI CTAG 2 cut(s) 380, 830
Zsp2I ATGCAT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.