DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| REPA_OB_2 | PF16900 | 2 - 82 | 7.1e-10 | Replication protein A OB domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 305 |
| AciI | CCGC | 1 cut(s) | 355 |
| AclWI | GGATC | 1 cut(s) | 290 |
| AcoI | YGGCCR | 1 cut(s) | 307 |
| AfaI | GTAC | 2 cut(s) | 51, 210 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 305, 503 |
| AgsI | TTSAA | 1 cut(s) | 248 |
| AluBI | AGCT | 1 cut(s) | 228 |
| AluI | AGCT | 1 cut(s) | 228 |
| Alw21I | GWGCWC | 1 cut(s) | 272 |
| AlwI | GGATC | 1 cut(s) | 290 |
| AoxI | GGCC | 1 cut(s) | 307 |
| ApeKI | GCWGC | 1 cut(s) | 33 |
| AspLEI | GCGC | 1 cut(s) | 512 |
| AsuC2I | CCSGG | 1 cut(s) | 346 |
| AsuHPI | GGTGA | 1 cut(s) | 409 |
| BalI | TGGCCA | 1 cut(s) | 309 |
| BbsI | GAAGAC | 1 cut(s) | 324 |
| Bbv12I | GWGCWC | 1 cut(s) | 272 |
| BbvI | GCAGC | 1 cut(s) | 20 |
| BccI | CCATC | 2 cut(s) | 271, 382 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BciVI | GTATCC | 1 cut(s) | 151 |
| BcnI | CCSGG | 1 cut(s) | 346 |
| BfaI | CTAG | 2 cut(s) | 212, 225 |
| BfoI | RGCGCY | 1 cut(s) | 513 |
| BfuI | GTATCC | 1 cut(s) | 151 |
| BisI | GCNGC | 1 cut(s) | 34 |
| BlsI | GCNGC | 1 cut(s) | 35 |
| BmcAI | AGTACT | 1 cut(s) | 210 |
| Bme1390I | CCNGG | 1 cut(s) | 346 |
| BmiI | GGNNCC | 1 cut(s) | 495 |
| BmrFI | CCNGG | 1 cut(s) | 346 |
| BmsI | GCATC | 3 cut(s) | 45, 172, 272 |
| BpiI | GAAGAC | 1 cut(s) | 324 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 223, 255 |
| BpuEI | CTTGAG | 1 cut(s) | 250 |
| BpuMI | CCSGG | 1 cut(s) | 346 |
| BsaJI | CCNNGG | 1 cut(s) | 345 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 305, 503 |
| Bse1I | ACTGG | 2 cut(s) | 206, 531 |
| BseDI | CCNNGG | 1 cut(s) | 345 |
| BseGI | GGATG | 2 cut(s) | 187, 374 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 305, 503 |
| BseMII | CTCAG | 1 cut(s) | 113 |
| BseNI | ACTGG | 2 cut(s) | 206, 531 |
| BseXI | GCAGC | 1 cut(s) | 20 |
| BshFI | GGCC | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 1 cut(s) | 272 |
| BsiSI | CCGG | 1 cut(s) | 345 |
| BslFI | GGGAC | 1 cut(s) | 396 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 305, 503 |
| BsmFI | GGGAC | 1 cut(s) | 396 |
| BsnI | GGCC | 1 cut(s) | 309 |
| Bsp1286I | GDGCHC | 1 cut(s) | 272 |
| Bsp143I | GATC | 4 cut(s) | 175, 295, 406, 431 |
| BspACI | CCGC | 1 cut(s) | 355 |
| BspANI | GGCC | 1 cut(s) | 309 |
| BspCNI | CTCAG | 1 cut(s) | 114 |
| BspHI | TCATGA | 1 cut(s) | 58 |
| BspLI | GGNNCC | 1 cut(s) | 495 |
| BspPI | GGATC | 1 cut(s) | 290 |
| BsrI | ACTGG | 2 cut(s) | 206, 531 |
| BssECI | CCNNGG | 1 cut(s) | 345 |
| BssMI | GATC | 4 cut(s) | 175, 295, 406, 431 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| Bst6I | CTCTTC | 1 cut(s) | 324 |
| BstC8I | GCNNGC | 1 cut(s) | 445 |
| BstDEI | CTNAG | 1 cut(s) | 122 |
| BstF5I | GGATG | 2 cut(s) | 187, 374 |
| BstH2I | RGCGCY | 1 cut(s) | 513 |
| BstHHI | GCGC | 1 cut(s) | 512 |
| BstKTI | GATC | 4 cut(s) | 178, 298, 409, 434 |
| BstMBI | GATC | 4 cut(s) | 175, 295, 406, 431 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 361 |
| BstSCI | CCNGG | 1 cut(s) | 344 |
| BstV1I | GCAGC | 1 cut(s) | 20 |
| BstV2I | GAAGAC | 1 cut(s) | 324 |
| BsuI | GTATCC | 1 cut(s) | 151 |
| BsuRI | GGCC | 1 cut(s) | 309 |
| BtsCI | GGATG | 2 cut(s) | 187, 374 |
| BtsIMutI | CAGTG | 1 cut(s) | 524 |
| Cac8I | GCNNGC | 1 cut(s) | 445 |
| CciI | TCATGA | 1 cut(s) | 58 |
| CfoI | GCGC | 1 cut(s) | 512 |
| Csp6I | GTAC | 2 cut(s) | 50, 209 |
| CviAII | CATG | 1 cut(s) | 59 |
| CviJI | RGCY | 5 cut(s) | 33, 228, 309, 344, 401 |
| CviKI_1 | RGCY | 5 cut(s) | 33, 228, 309, 344, 401 |
| CviQI | GTAC | 2 cut(s) | 50, 209 |
| DdeI | CTNAG | 1 cut(s) | 122 |
| DpnI | GATC | 4 cut(s) | 177, 297, 408, 433 |
| DpnII | GATC | 4 cut(s) | 175, 295, 406, 431 |
| EaeI | YGGCCR | 1 cut(s) | 307 |
| Eam1104I | CTCTTC | 1 cut(s) | 324 |
| EarI | CTCTTC | 1 cut(s) | 324 |
| EcoT22I | ATGCAT | 1 cut(s) | 287 |
| FaeI | CATG | 1 cut(s) | 62 |
| FaiI | YATR | 5 cut(s) | 20, 30, 60, 287, 543 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 499, 531 |
| FaqI | GGGAC | 1 cut(s) | 396 |
| FatI | CATG | 1 cut(s) | 58 |
| Fnu4HI | GCNGC | 1 cut(s) | 34 |
| FokI | GGATG | 2 cut(s) | 194, 361 |
| Fsp4HI | GCNGC | 1 cut(s) | 34 |
| FspBI | CTAG | 2 cut(s) | 212, 225 |
| GlaI | GCGC | 1 cut(s) | 511 |
| GluI | GCNGC | 1 cut(s) | 34 |
| HaeII | RGCGCY | 1 cut(s) | 513 |
| HaeIII | GGCC | 1 cut(s) | 309 |
| HapII | CCGG | 1 cut(s) | 345 |
| HhaI | GCGC | 1 cut(s) | 512 |
| Hin1II | CATG | 1 cut(s) | 62 |
| Hin6I | GCGC | 1 cut(s) | 510 |
| HinP1I | GCGC | 1 cut(s) | 510 |
| HpaII | CCGG | 1 cut(s) | 345 |
| HphI | GGTGA | 1 cut(s) | 409 |
| Hpy188I | TCNGA | 2 cut(s) | 123, 469 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 179, 299, 487 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyCH4V | TGCA | 4 cut(s) | 36, 164, 185, 285 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 361 |
| HpyF3I | CTNAG | 1 cut(s) | 122 |
| Hsp92II | CATG | 1 cut(s) | 62 |
| HspAI | GCGC | 1 cut(s) | 510 |
| Kzo9I | GATC | 4 cut(s) | 175, 295, 406, 431 |
| LpnPI | CCDG | 8 cut(s) | 164, 219, 312, 358, 472, 486, 510, 512 |
| Lsp1109I | GCAGC | 1 cut(s) | 20 |
| LweI | GCATC | 3 cut(s) | 45, 172, 272 |
| MaeI | CTAG | 2 cut(s) | 212, 225 |
| MalI | GATC | 4 cut(s) | 177, 297, 408, 433 |
| MboI | GATC | 4 cut(s) | 175, 295, 406, 431 |
| MboII | GAAGA | 6 cut(s) | 143, 151, 329, 341, 490, 548 |
| MfeI | CAATTG | 1 cut(s) | 435 |
| MhlI | GDGCHC | 1 cut(s) | 272 |
| MlsI | TGGCCA | 1 cut(s) | 309 |
| MluCI | AATT | 3 cut(s) | 186, 193, 435 |
| MluNI | TGGCCA | 1 cut(s) | 309 |
| MnlI | CCTC | 7 cut(s) | 55, 210, 225, 319, 425, 433, 483 |
| Mox20I | TGGCCA | 1 cut(s) | 309 |
| Mph1103I | ATGCAT | 1 cut(s) | 287 |
| MscI | TGGCCA | 1 cut(s) | 309 |
| Msp20I | TGGCCA | 1 cut(s) | 309 |
| MspI | CCGG | 1 cut(s) | 345 |
| MspR9I | CCNGG | 1 cut(s) | 346 |
| MunI | CAATTG | 1 cut(s) | 435 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 361 |
| NciI | CCSGG | 1 cut(s) | 346 |
| NdeII | GATC | 4 cut(s) | 175, 295, 406, 431 |
| NlaIII | CATG | 1 cut(s) | 62 |
| NlaIV | GGNNCC | 1 cut(s) | 495 |
| NsiI | ATGCAT | 1 cut(s) | 287 |
| PagI | TCATGA | 1 cut(s) | 58 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 305 |
| PkrI | GCNGC | 1 cut(s) | 35 |
| PspN4I | GGNNCC | 1 cut(s) | 495 |
| RsaI | GTAC | 2 cut(s) | 51, 210 |
| RsaNI | GTAC | 2 cut(s) | 50, 209 |
| SatI | GCNGC | 1 cut(s) | 34 |
| Sau3AI | GATC | 4 cut(s) | 175, 295, 406, 431 |
| ScaI | AGTACT | 1 cut(s) | 210 |
| ScrFI | CCNGG | 1 cut(s) | 346 |
| SduI | GDGCHC | 1 cut(s) | 272 |
| SetI | ASST | 3 cut(s) | 27, 66, 230 |
| SfaNI | GCATC | 3 cut(s) | 45, 172, 272 |
| SmlI | CTYRAG | 1 cut(s) | 229 |
| SmoI | CTYRAG | 1 cut(s) | 229 |
| Sse9I | AATT | 3 cut(s) | 186, 193, 435 |
| SsiI | CCGC | 1 cut(s) | 355 |
| SspMI | CTAG | 2 cut(s) | 212, 225 |
| StyD4I | CCNGG | 1 cut(s) | 344 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TaqI | TCGA | 2 cut(s) | 174, 266 |
| TasI | AATT | 3 cut(s) | 186, 193, 435 |
| TatI | WGTACW | 1 cut(s) | 208 |
| TscAI | CASTG | 1 cut(s) | 531 |
| TseI | GCWGC | 1 cut(s) | 33 |
| TspDTI | ATGAA | 2 cut(s) | 451, 507 |
| TspRI | CASTG | 1 cut(s) | 531 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 305 |
| XspI | CTAG | 2 cut(s) | 212, 225 |
| ZrmI | AGTACT | 1 cut(s) | 210 |
| Zsp2I | ATGCAT | 1 cut(s) | 287 |