DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 20 - 109 | 2.5e-07 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 158 |
| AfaI | GTAC | 2 cut(s) | 143, 209 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 158 |
| AflIII | ACRYGT | 2 cut(s) | 90, 125 |
| AgsI | TTSAA | 2 cut(s) | 14, 230 |
| AjiI | CACGTC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 113 |
| AspS9I | GGNCC | 1 cut(s) | 148 |
| AvaII | GGWCC | 1 cut(s) | 148 |
| BbsI | GAAGAC | 1 cut(s) | 237 |
| BbvI | GCAGC | 1 cut(s) | 100 |
| BisI | GCNGC | 1 cut(s) | 114 |
| BlsI | GCNGC | 1 cut(s) | 115 |
| Bme18I | GGWCC | 1 cut(s) | 148 |
| BmgBI | CACGTC | 1 cut(s) | 93 |
| BmgT120I | GGNCC | 1 cut(s) | 148 |
| BmiI | GGNNCC | 1 cut(s) | 150 |
| BmsI | GCATC | 1 cut(s) | 80 |
| BpiI | GAAGAC | 1 cut(s) | 237 |
| BsaJI | CCNNGG | 1 cut(s) | 203 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 158 |
| BseDI | CCNNGG | 1 cut(s) | 203 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 158 |
| BseXI | GCAGC | 1 cut(s) | 100 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 158 |
| Bsp1407I | TGTACA | 1 cut(s) | 141 |
| Bsp143I | GATC | 2 cut(s) | 246, 322 |
| BspLI | GGNNCC | 1 cut(s) | 150 |
| BsrGI | TGTACA | 1 cut(s) | 141 |
| BssECI | CCNNGG | 1 cut(s) | 203 |
| BssMI | GATC | 2 cut(s) | 246, 322 |
| BssT1I | CCWWGG | 1 cut(s) | 203 |
| Bst6I | CTCTTC | 1 cut(s) | 9 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 296 |
| BstAUI | TGTACA | 1 cut(s) | 141 |
| BstC8I | GCNNGC | 2 cut(s) | 118, 292 |
| BstDEI | CTNAG | 2 cut(s) | 28, 358 |
| BstKTI | GATC | 2 cut(s) | 249, 325 |
| BstMBI | GATC | 2 cut(s) | 246, 322 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 273, 296 |
| BstNSI | RCATGY | 2 cut(s) | 129, 294 |
| BstV1I | GCAGC | 1 cut(s) | 100 |
| BstV2I | GAAGAC | 1 cut(s) | 237 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 204 |
| BtrI | CACGTC | 1 cut(s) | 93 |
| Cac8I | GCNNGC | 2 cut(s) | 118, 292 |
| Cfr13I | GGNCC | 1 cut(s) | 148 |
| Csp6I | GTAC | 2 cut(s) | 142, 208 |
| CviAII | CATG | 3 cut(s) | 126, 291, 296 |
| CviJI | RGCY | 1 cut(s) | 24 |
| CviKI_1 | RGCY | 1 cut(s) | 24 |
| CviQI | GTAC | 2 cut(s) | 142, 208 |
| DdeI | CTNAG | 2 cut(s) | 28, 358 |
| DpnI | GATC | 2 cut(s) | 248, 324 |
| DpnII | GATC | 2 cut(s) | 246, 322 |
| Eam1104I | CTCTTC | 1 cut(s) | 9 |
| EarI | CTCTTC | 1 cut(s) | 9 |
| Eco130I | CCWWGG | 1 cut(s) | 203 |
| Eco47I | GGWCC | 1 cut(s) | 148 |
| EcoO109I | RGGNCCY | 1 cut(s) | 148 |
| EcoT14I | CCWWGG | 1 cut(s) | 203 |
| ErhI | CCWWGG | 1 cut(s) | 203 |
| FaeI | CATG | 3 cut(s) | 129, 294, 299 |
| FatI | CATG | 3 cut(s) | 125, 290, 295 |
| FauNDI | CATATG | 1 cut(s) | 97 |
| Fnu4HI | GCNGC | 1 cut(s) | 114 |
| Fsp4HI | GCNGC | 1 cut(s) | 114 |
| GluI | GCNGC | 1 cut(s) | 114 |
| Hin1II | CATG | 3 cut(s) | 129, 294, 299 |
| HincII | GTYRAC | 1 cut(s) | 164 |
| HindII | GTYRAC | 1 cut(s) | 164 |
| Hpy166II | GTNNAC | 2 cut(s) | 164, 312 |
| Hpy188I | TCNGA | 1 cut(s) | 361 |
| Hpy8I | GTNNAC | 2 cut(s) | 164, 312 |
| HpyCH4IV | ACGT | 1 cut(s) | 92 |
| HpyCH4V | TGCA | 3 cut(s) | 66, 290, 299 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 273, 296 |
| HpyF3I | CTNAG | 2 cut(s) | 28, 358 |
| HpySE526I | ACGT | 1 cut(s) | 92 |
| Hsp92II | CATG | 3 cut(s) | 129, 294, 299 |
| Kzo9I | GATC | 2 cut(s) | 246, 322 |
| LpnPI | CCDG | 1 cut(s) | 48 |
| Lsp1109I | GCAGC | 1 cut(s) | 100 |
| LweI | GCATC | 1 cut(s) | 80 |
| MaeII | ACGT | 1 cut(s) | 92 |
| MaeIII | GTNAC | 1 cut(s) | 4 |
| MalI | GATC | 2 cut(s) | 248, 324 |
| MboI | GATC | 2 cut(s) | 246, 322 |
| MboII | GAAGA | 2 cut(s) | 26, 242 |
| MfeI | CAATTG | 3 cut(s) | 9, 156, 340 |
| MluCI | AATT | 5 cut(s) | 9, 75, 156, 269, 340 |
| MseI | TTAA | 2 cut(s) | 78, 87 |
| MslI | CAYNNNNRTG | 2 cut(s) | 61, 100 |
| MunI | CAATTG | 3 cut(s) | 9, 156, 340 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 273, 296 |
| NdeI | CATATG | 1 cut(s) | 97 |
| NdeII | GATC | 2 cut(s) | 246, 322 |
| NlaIII | CATG | 3 cut(s) | 129, 294, 299 |
| NlaIV | GGNNCC | 1 cut(s) | 150 |
| NmuCI | GTSAC | 1 cut(s) | 4 |
| NspI | RCATGY | 2 cut(s) | 129, 294 |
| PaeI | GCATGC | 1 cut(s) | 294 |
| PciI | ACATGT | 1 cut(s) | 125 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 158 |
| PkrI | GCNGC | 1 cut(s) | 115 |
| PpuMI | RGGWCCY | 1 cut(s) | 148 |
| PscI | ACATGT | 1 cut(s) | 125 |
| Psp5II | RGGWCCY | 1 cut(s) | 148 |
| PspN4I | GGNNCC | 1 cut(s) | 150 |
| PspPI | GGNCC | 1 cut(s) | 148 |
| PspPPI | RGGWCCY | 1 cut(s) | 148 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 200, 232 |
| RsaI | GTAC | 2 cut(s) | 143, 209 |
| RsaNI | GTAC | 2 cut(s) | 142, 208 |
| RseI | CAYNNNNRTG | 2 cut(s) | 61, 100 |
| SaqAI | TTAA | 2 cut(s) | 78, 87 |
| SatI | GCNGC | 1 cut(s) | 114 |
| Sau3AI | GATC | 2 cut(s) | 246, 322 |
| Sau96I | GGNCC | 1 cut(s) | 148 |
| SetI | ASST | 2 cut(s) | 95, 285 |
| SfaNI | GCATC | 1 cut(s) | 80 |
| SinI | GGWCC | 1 cut(s) | 148 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 61, 100 |
| SphI | GCATGC | 1 cut(s) | 294 |
| Sse9I | AATT | 5 cut(s) | 9, 75, 156, 269, 340 |
| StyI | CCWWGG | 1 cut(s) | 203 |
| TaiI | ACGT | 1 cut(s) | 95 |
| TasI | AATT | 5 cut(s) | 9, 75, 156, 269, 340 |
| TatI | WGTACW | 1 cut(s) | 141 |
| Tru1I | TTAA | 2 cut(s) | 78, 87 |
| Tru9I | TTAA | 2 cut(s) | 78, 87 |
| TseFI | GTSAC | 1 cut(s) | 4 |
| TseI | GCWGC | 1 cut(s) | 113 |
| Tsp45I | GTSAC | 1 cut(s) | 4 |
| TspDTI | ATGAA | 1 cut(s) | 114 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 158 |
| VpaK11BI | GGWCC | 1 cut(s) | 148 |
| XceI | RCATGY | 2 cut(s) | 129, 294 |