DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 390 |
| Acc36I | ACCTGC | 1 cut(s) | 390 |
| AccI | GTMKAC | 1 cut(s) | 427 |
| AciI | CCGC | 1 cut(s) | 505 |
| AclWI | GGATC | 2 cut(s) | 144, 1176 |
| AcoI | YGGCCR | 1 cut(s) | 691 |
| AcsI | RAATTY | 2 cut(s) | 529, 1130 |
| AcuI | CTGAAG | 3 cut(s) | 147, 228, 1073 |
| AfaI | GTAC | 3 cut(s) | 129, 374, 550 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1066 |
| AgeI | ACCGGT | 1 cut(s) | 354 |
| AjiI | CACGTC | 1 cut(s) | 35 |
| AluBI | AGCT | 6 cut(s) | 578, 749, 830, 865, 900, 1126 |
| AluI | AGCT | 6 cut(s) | 578, 749, 830, 865, 900, 1126 |
| Alw21I | GWGCWC | 3 cut(s) | 867, 928, 1128 |
| Alw26I | GTCTC | 1 cut(s) | 171 |
| AlwI | GGATC | 2 cut(s) | 144, 1176 |
| Ama87I | CYCGRG | 1 cut(s) | 1109 |
| AoxI | GGCC | 4 cut(s) | 115, 691, 933, 1151 |
| ApeKI | GCWGC | 3 cut(s) | 281, 578, 900 |
| ApoI | RAATTY | 2 cut(s) | 529, 1130 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1247, 1279 |
| AsiGI | ACCGGT | 1 cut(s) | 354 |
| AspLEI | GCGC | 1 cut(s) | 286 |
| AsuHPI | GGTGA | 1 cut(s) | 765 |
| AvaI | CYCGRG | 1 cut(s) | 1109 |
| BalI | TGGCCA | 1 cut(s) | 693 |
| BanII | GRGCYC | 3 cut(s) | 867, 1099, 1128 |
| Bbv12I | GWGCWC | 3 cut(s) | 867, 928, 1128 |
| BbvI | GCAGC | 3 cut(s) | 293, 565, 887 |
| BccI | CCATC | 6 cut(s) | 778, 778, 944, 1060, 1208, 1268 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 560, 594 |
| BcoDI | GTCTC | 1 cut(s) | 171 |
| BfaI | CTAG | 3 cut(s) | 563, 929, 1047 |
| BfmI | CTRYAG | 1 cut(s) | 428 |
| BfuAI | ACCTGC | 1 cut(s) | 390 |
| BisI | GCNGC | 3 cut(s) | 282, 579, 901 |
| BlsI | GCNGC | 3 cut(s) | 283, 580, 902 |
| BmeT110I | CYCGRG | 1 cut(s) | 1109 |
| BmgBI | CACGTC | 1 cut(s) | 35 |
| BmiI | GGNNCC | 1 cut(s) | 977 |
| BmsI | GCATC | 4 cut(s) | 139, 387, 617, 1106 |
| BpmI | CTGGAG | 2 cut(s) | 651, 981 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1122 |
| BpuEI | CTTGAG | 2 cut(s) | 90, 1082 |
| BsaWI | WCCGGW | 1 cut(s) | 354 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1066 |
| Bse118I | RCCGGY | 1 cut(s) | 354 |
| Bse1I | ACTGG | 2 cut(s) | 135, 986 |
| Bse3DI | GCAATG | 1 cut(s) | 1029 |
| BseGI | GGATG | 5 cut(s) | 762, 982, 1198, 1219, 1255 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1066 |
| BseMI | GCAATG | 1 cut(s) | 1029 |
| BseMII | CTCAG | 2 cut(s) | 869, 1113 |
| BseNI | ACTGG | 2 cut(s) | 135, 986 |
| BseXI | GCAGC | 3 cut(s) | 293, 565, 887 |
| BsgI | GTGCAG | 2 cut(s) | 88, 368 |
| Bsh1285I | CGRYCG | 1 cut(s) | 727 |
| BshFI | GGCC | 4 cut(s) | 117, 693, 935, 1153 |
| BshTI | ACCGGT | 1 cut(s) | 354 |
| BsiEI | CGRYCG | 1 cut(s) | 727 |
| BsiHKAI | GWGCWC | 3 cut(s) | 867, 928, 1128 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1109 |
| BsiSI | CCGG | 2 cut(s) | 355, 973 |
| BslFI | GGGAC | 1 cut(s) | 978 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1066 |
| BsmAI | GTCTC | 1 cut(s) | 171 |
| BsmFI | GGGAC | 1 cut(s) | 978 |
| BsnI | GGCC | 4 cut(s) | 117, 693, 935, 1153 |
| BsoBI | CYCGRG | 1 cut(s) | 1109 |
| Bsp1286I | GDGCHC | 4 cut(s) | 867, 928, 1099, 1128 |
| Bsp143I | GATC | 3 cut(s) | 136, 633, 1168 |
| BspACI | CCGC | 1 cut(s) | 505 |
| BspANI | GGCC | 4 cut(s) | 117, 693, 935, 1153 |
| BspCNI | CTCAG | 2 cut(s) | 868, 1114 |
| BspLI | GGNNCC | 1 cut(s) | 977 |
| BspMI | ACCTGC | 1 cut(s) | 390 |
| BspPI | GGATC | 2 cut(s) | 144, 1176 |
| BspQI | GCTCTTC | 2 cut(s) | 872, 1104 |
| BsrDI | GCAATG | 1 cut(s) | 1029 |
| BsrFI | RCCGGY | 1 cut(s) | 354 |
| BsrI | ACTGG | 2 cut(s) | 135, 986 |
| BssAI | RCCGGY | 1 cut(s) | 354 |
| BssMI | GATC | 3 cut(s) | 136, 633, 1168 |
| Bst4CI | ACNGT | 6 cut(s) | 75, 125, 234, 432, 950, 969 |
| Bst6I | CTCTTC | 2 cut(s) | 872, 1104 |
| BstC8I | GCNNGC | 1 cut(s) | 438 |
| BstDEI | CTNAG | 2 cut(s) | 855, 1122 |
| BstF5I | GGATG | 5 cut(s) | 762, 982, 1198, 1219, 1255 |
| BstHHI | GCGC | 1 cut(s) | 286 |
| BstKTI | GATC | 3 cut(s) | 139, 636, 1171 |
| BstMAI | GTCTC | 1 cut(s) | 171 |
| BstMBI | GATC | 3 cut(s) | 136, 633, 1168 |
| BstMCI | CGRYCG | 1 cut(s) | 727 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 158, 932 |
| BstSFI | CTRYAG | 1 cut(s) | 428 |
| BstV1I | GCAGC | 3 cut(s) | 293, 565, 887 |
| BsuRI | GGCC | 4 cut(s) | 117, 693, 935, 1153 |
| BtrI | CACGTC | 1 cut(s) | 35 |
| BtsCI | GGATG | 5 cut(s) | 762, 982, 1198, 1219, 1255 |
| BtsIMutI | CAGTG | 4 cut(s) | 121, 171, 204, 993 |
| BveI | ACCTGC | 1 cut(s) | 390 |
| Cac8I | GCNNGC | 1 cut(s) | 438 |
| CfoI | GCGC | 1 cut(s) | 286 |
| Cfr10I | RCCGGY | 1 cut(s) | 354 |
| Csp6I | GTAC | 3 cut(s) | 128, 373, 549 |
| CspAI | ACCGGT | 1 cut(s) | 354 |
| CviAII | CATG | 4 cut(s) | 158, 961, 1025, 1291 |
| CviQI | GTAC | 3 cut(s) | 128, 373, 549 |
| DdeI | CTNAG | 2 cut(s) | 855, 1122 |
| DpnI | GATC | 3 cut(s) | 138, 635, 1170 |
| DpnII | GATC | 3 cut(s) | 136, 633, 1168 |
| EaeI | YGGCCR | 1 cut(s) | 691 |
| Eam1104I | CTCTTC | 2 cut(s) | 872, 1104 |
| EarI | CTCTTC | 2 cut(s) | 872, 1104 |
| Ecl136II | GAGCTC | 2 cut(s) | 865, 1126 |
| Eco24I | GRGCYC | 3 cut(s) | 867, 1099, 1128 |
| Eco53kI | GAGCTC | 2 cut(s) | 865, 1126 |
| Eco57I | CTGAAG | 3 cut(s) | 147, 228, 1073 |
| Eco88I | CYCGRG | 1 cut(s) | 1109 |
| EcoICRI | GAGCTC | 2 cut(s) | 865, 1126 |
| EcoT38I | GRGCYC | 3 cut(s) | 867, 1099, 1128 |
| FaeI | CATG | 4 cut(s) | 161, 964, 1028, 1294 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1083, 1115 |
| FaqI | GGGAC | 1 cut(s) | 978 |
| FatI | CATG | 4 cut(s) | 157, 960, 1024, 1290 |
| FauNDI | CATATG | 1 cut(s) | 1008 |
| FblI | GTMKAC | 1 cut(s) | 427 |
| Fnu4HI | GCNGC | 3 cut(s) | 282, 579, 901 |
| FokI | GGATG | 5 cut(s) | 749, 969, 1205, 1226, 1262 |
| FriOI | GRGCYC | 3 cut(s) | 867, 1099, 1128 |
| Fsp4HI | GCNGC | 3 cut(s) | 282, 579, 901 |
| FspBI | CTAG | 3 cut(s) | 563, 929, 1047 |
| GlaI | GCGC | 1 cut(s) | 285 |
| GluI | GCNGC | 3 cut(s) | 282, 579, 901 |
| GsuI | CTGGAG | 2 cut(s) | 651, 981 |
| HaeIII | GGCC | 4 cut(s) | 117, 693, 935, 1153 |
| HapII | CCGG | 2 cut(s) | 355, 973 |
| HhaI | GCGC | 1 cut(s) | 286 |
| Hin1II | CATG | 4 cut(s) | 161, 964, 1028, 1294 |
| Hin6I | GCGC | 1 cut(s) | 284 |
| HinP1I | GCGC | 1 cut(s) | 284 |
| HincII | GTYRAC | 1 cut(s) | 852 |
| HindII | GTYRAC | 1 cut(s) | 852 |
| HinfI | GANTC | 6 cut(s) | 13, 257, 848, 878, 992, 1241 |
| HpaII | CCGG | 2 cut(s) | 355, 973 |
| HphI | GGTGA | 1 cut(s) | 765 |
| Hpy166II | GTNNAC | 4 cut(s) | 128, 428, 852, 991 |
| Hpy188I | TCNGA | 7 cut(s) | 463, 484, 858, 941, 1204, 1213, 1225 |
| Hpy188III | TCNNGA | 9 cut(s) | 107, 563, 668, 682, 758, 929, 998, 1111, 1157 |
| Hpy8I | GTNNAC | 4 cut(s) | 128, 428, 852, 991 |
| HpyAV | CCTTC | 5 cut(s) | 163, 167, 203, 635, 828 |
| HpyCH4III | ACNGT | 6 cut(s) | 75, 125, 234, 432, 950, 969 |
| HpyCH4IV | ACGT | 2 cut(s) | 34, 551 |
| HpyCH4V | TGCA | 4 cut(s) | 69, 385, 545, 835 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 158, 932 |
| HpyF3I | CTNAG | 2 cut(s) | 855, 1122 |
| HpySE526I | ACGT | 2 cut(s) | 34, 551 |
| Hsp92II | CATG | 4 cut(s) | 161, 964, 1028, 1294 |
| HspAI | GCGC | 1 cut(s) | 284 |
| Kzo9I | GATC | 3 cut(s) | 136, 633, 1168 |
| LguI | GCTCTTC | 2 cut(s) | 872, 1104 |
| Lsp1109I | GCAGC | 3 cut(s) | 293, 565, 887 |
| LweI | GCATC | 4 cut(s) | 139, 387, 617, 1106 |
| MaeI | CTAG | 3 cut(s) | 563, 929, 1047 |
| MaeII | ACGT | 2 cut(s) | 34, 551 |
| MaeIII | GTNAC | 3 cut(s) | 644, 787, 796 |
| MalI | GATC | 3 cut(s) | 138, 635, 1170 |
| MboI | GATC | 3 cut(s) | 136, 633, 1168 |
| MboII | GAAGA | 8 cut(s) | 197, 304, 633, 650, 670, 859, 1091, 1212 |
| MfeI | CAATTG | 1 cut(s) | 321 |
| MhlI | GDGCHC | 4 cut(s) | 867, 928, 1099, 1128 |
| MlsI | TGGCCA | 1 cut(s) | 693 |
| MluNI | TGGCCA | 1 cut(s) | 693 |
| MlyI | GAGTC | 2 cut(s) | 857, 986 |
| MmeI | TCCRAC | 2 cut(s) | 579, 790 |
| Mox20I | TGGCCA | 1 cut(s) | 693 |
| MscI | TGGCCA | 1 cut(s) | 693 |
| MseI | TTAA | 2 cut(s) | 719, 1232 |
| MslI | CAYNNNNRTG | 3 cut(s) | 941, 1011, 1040 |
| Msp20I | TGGCCA | 1 cut(s) | 693 |
| MspI | CCGG | 2 cut(s) | 355, 973 |
| MunI | CAATTG | 1 cut(s) | 321 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 158, 932 |
| NdeI | CATATG | 1 cut(s) | 1008 |
| NdeII | GATC | 3 cut(s) | 136, 633, 1168 |
| NlaIII | CATG | 4 cut(s) | 161, 964, 1028, 1294 |
| NlaIV | GGNNCC | 1 cut(s) | 977 |
| NmuCI | GTSAC | 1 cut(s) | 796 |
| PaeR7I | CTCGAG | 1 cut(s) | 1109 |
| PaqCI | CACCTGC | 1 cut(s) | 390 |
| PciSI | GCTCTTC | 2 cut(s) | 872, 1104 |
| PfeI | GAWTC | 4 cut(s) | 13, 257, 878, 1241 |
| PinAI | ACCGGT | 1 cut(s) | 354 |
| PkrI | GCNGC | 3 cut(s) | 283, 580, 902 |
| PleI | GAGTC | 2 cut(s) | 856, 986 |
| PpsI | GAGTC | 2 cut(s) | 856, 986 |
| Psp124BI | GAGCTC | 2 cut(s) | 867, 1128 |
| PspN4I | GGNNCC | 1 cut(s) | 977 |
| RsaI | GTAC | 3 cut(s) | 129, 374, 550 |
| RsaNI | GTAC | 3 cut(s) | 128, 373, 549 |
| RseI | CAYNNNNRTG | 3 cut(s) | 941, 1011, 1040 |
| SacI | GAGCTC | 2 cut(s) | 867, 1128 |
| SapI | GCTCTTC | 2 cut(s) | 872, 1104 |
| SaqAI | TTAA | 2 cut(s) | 719, 1232 |
| SatI | GCNGC | 3 cut(s) | 282, 579, 901 |
| Sau3AI | GATC | 3 cut(s) | 136, 633, 1168 |
| SchI | GAGTC | 2 cut(s) | 857, 986 |
| SduI | GDGCHC | 4 cut(s) | 867, 928, 1099, 1128 |
| SfaNI | GCATC | 4 cut(s) | 139, 387, 617, 1106 |
| SfcI | CTRYAG | 1 cut(s) | 428 |
| Sfr274I | CTCGAG | 1 cut(s) | 1109 |
| SlaI | CTCGAG | 1 cut(s) | 1109 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 941, 1011, 1040 |
| SmlI | CTYRAG | 3 cut(s) | 105, 1061, 1109 |
| SmoI | CTYRAG | 3 cut(s) | 105, 1061, 1109 |
| SsiI | CCGC | 1 cut(s) | 505 |
| SspI | AATATT | 2 cut(s) | 90, 913 |
| SspMI | CTAG | 3 cut(s) | 563, 929, 1047 |
| SstI | GAGCTC | 2 cut(s) | 867, 1128 |
| TaaI | ACNGT | 6 cut(s) | 75, 125, 234, 432, 950, 969 |
| TaiI | ACGT | 2 cut(s) | 37, 554 |
| TaqI | TCGA | 5 cut(s) | 5, 570, 636, 1110, 1128 |
| TaqII | GACCGA | 1 cut(s) | 741 |
| TatI | WGTACW | 2 cut(s) | 127, 372 |
| TfiI | GAWTC | 4 cut(s) | 13, 257, 878, 1241 |
| Tru1I | TTAA | 2 cut(s) | 719, 1232 |
| Tru9I | TTAA | 2 cut(s) | 719, 1232 |
| TscAI | CASTG | 4 cut(s) | 128, 171, 211, 993 |
| TseFI | GTSAC | 1 cut(s) | 796 |
| TseI | GCWGC | 3 cut(s) | 281, 578, 900 |
| Tsp45I | GTSAC | 1 cut(s) | 796 |
| TspDTI | ATGAA | 6 cut(s) | 146, 198, 237, 959, 1025, 1254 |
| TspGWI | ACGGA | 1 cut(s) | 603 |
| TspRI | CASTG | 4 cut(s) | 128, 171, 211, 993 |
| XapI | RAATTY | 2 cut(s) | 529, 1130 |
| XbaI | TCTAGA | 2 cut(s) | 562, 928 |
| XhoI | CTCGAG | 1 cut(s) | 1109 |
| XmiI | GTMKAC | 1 cut(s) | 427 |
| XspI | CTAG | 3 cut(s) | 563, 929, 1047 |