DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 148 - 260 | 8.6e-13 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 566 |
| AccII | CGCG | 1 cut(s) | 7 |
| AciI | CCGC | 2 cut(s) | 444, 505 |
| AcuI | CTGAAG | 1 cut(s) | 69 |
| AfaI | GTAC | 6 cut(s) | 419, 466, 485, 512, 550, 925 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 912 |
| AgsI | TTSAA | 7 cut(s) | 140, 566, 605, 728, 764, 848, 952 |
| AjnI | CCWGG | 1 cut(s) | 304 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 645, 677 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 702, 734 |
| AluBI | AGCT | 5 cut(s) | 316, 589, 650, 672, 881 |
| AluI | AGCT | 5 cut(s) | 316, 589, 650, 672, 881 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 92, 884 |
| ApeKI | GCWGC | 1 cut(s) | 217 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 539 |
| AspLEI | GCGC | 2 cut(s) | 7, 403 |
| AsuHPI | GGTGA | 4 cut(s) | 80, 320, 697, 797 |
| BauI | CACGAG | 1 cut(s) | 132 |
| BbsI | GAAGAC | 2 cut(s) | 16, 949 |
| BbvI | GCAGC | 1 cut(s) | 229 |
| BciT130I | CCWGG | 1 cut(s) | 306 |
| BfaI | CTAG | 2 cut(s) | 147, 273 |
| BglII | AGATCT | 1 cut(s) | 432 |
| BisI | GCNGC | 3 cut(s) | 218, 444, 505 |
| BlsI | GCNGC | 3 cut(s) | 219, 445, 506 |
| Bme1390I | CCNGG | 1 cut(s) | 306 |
| BmrFI | CCNGG | 1 cut(s) | 306 |
| BmrI | ACTGGG | 1 cut(s) | 716 |
| BmsI | GCATC | 1 cut(s) | 675 |
| BmuI | ACTGGG | 1 cut(s) | 716 |
| BpiI | GAAGAC | 2 cut(s) | 16, 949 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 910, 942 |
| BpuEI | CTTGAG | 1 cut(s) | 912 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 702, 732 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 912 |
| Bse1I | ACTGG | 2 cut(s) | 687, 722 |
| Bse3DI | GCAATG | 1 cut(s) | 212 |
| BseBI | CCWGG | 1 cut(s) | 306 |
| BseGI | GGATG | 1 cut(s) | 497 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 912 |
| BseMI | GCAATG | 1 cut(s) | 212 |
| BseMII | CTCAG | 1 cut(s) | 921 |
| BseNI | ACTGG | 2 cut(s) | 687, 722 |
| BseRI | GAGGAG | 1 cut(s) | 816 |
| BseXI | GCAGC | 1 cut(s) | 229 |
| Bsh1236I | CGCG | 1 cut(s) | 7 |
| Bsh1285I | CGRYCG | 1 cut(s) | 244 |
| BsiEI | CGRYCG | 1 cut(s) | 244 |
| BslFI | GGGAC | 1 cut(s) | 554 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 912 |
| BsmFI | GGGAC | 1 cut(s) | 554 |
| Bsp1407I | TGTACA | 1 cut(s) | 417 |
| Bsp143I | GATC | 1 cut(s) | 432 |
| BspACI | CCGC | 2 cut(s) | 444, 505 |
| BspCNI | CTCAG | 1 cut(s) | 920 |
| BspFNI | CGCG | 1 cut(s) | 7 |
| BsrDI | GCAATG | 1 cut(s) | 212 |
| BsrGI | TGTACA | 1 cut(s) | 417 |
| BsrI | ACTGG | 2 cut(s) | 687, 722 |
| BssMI | GATC | 1 cut(s) | 432 |
| BssSI | CACGAG | 1 cut(s) | 132 |
| Bst2BI | CACGAG | 1 cut(s) | 132 |
| Bst2UI | CCWGG | 1 cut(s) | 306 |
| Bst4CI | ACNGT | 4 cut(s) | 242, 628, 796, 948 |
| Bst6I | CTCTTC | 3 cut(s) | 351, 579, 911 |
| BstAUI | TGTACA | 1 cut(s) | 417 |
| BstC8I | GCNNGC | 1 cut(s) | 879 |
| BstDEI | CTNAG | 1 cut(s) | 907 |
| BstF5I | GGATG | 1 cut(s) | 497 |
| BstFNI | CGCG | 1 cut(s) | 7 |
| BstHHI | GCGC | 2 cut(s) | 7, 403 |
| BstKTI | GATC | 1 cut(s) | 435 |
| BstMBI | GATC | 1 cut(s) | 432 |
| BstMCI | CGRYCG | 1 cut(s) | 244 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 112 |
| BstNI | CCWGG | 1 cut(s) | 306 |
| BstNSI | RCATGY | 1 cut(s) | 224 |
| BstSCI | CCNGG | 1 cut(s) | 304 |
| BstUI | CGCG | 1 cut(s) | 7 |
| BstV1I | GCAGC | 1 cut(s) | 229 |
| BstV2I | GAAGAC | 2 cut(s) | 16, 949 |
| BstX2I | RGATCY | 1 cut(s) | 432 |
| BstYI | RGATCY | 1 cut(s) | 432 |
| BtgZI | GCGATG | 1 cut(s) | 188 |
| BtsCI | GGATG | 1 cut(s) | 497 |
| BtsIMutI | CAGTG | 1 cut(s) | 195 |
| Cac8I | GCNNGC | 1 cut(s) | 879 |
| CaiI | CAGNNNCTG | 2 cut(s) | 92, 884 |
| CfoI | GCGC | 2 cut(s) | 7, 403 |
| CsiI | ACCWGGT | 1 cut(s) | 304 |
| Csp6I | GTAC | 6 cut(s) | 418, 465, 484, 511, 549, 924 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 826, 861 |
| CviAII | CATG | 5 cut(s) | 221, 421, 557, 579, 595 |
| CviJI | RGCY | 7 cut(s) | 316, 382, 589, 645, 650, 672, 881 |
| CviKI_1 | RGCY | 7 cut(s) | 316, 382, 589, 645, 650, 672, 881 |
| CviQI | GTAC | 6 cut(s) | 418, 465, 484, 511, 549, 924 |
| DdeI | CTNAG | 1 cut(s) | 907 |
| DpnI | GATC | 1 cut(s) | 434 |
| DpnII | GATC | 1 cut(s) | 432 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 566 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 566 |
| Eam1104I | CTCTTC | 3 cut(s) | 351, 579, 911 |
| EarI | CTCTTC | 3 cut(s) | 351, 579, 911 |
| Eco57I | CTGAAG | 1 cut(s) | 69 |
| EcoRII | CCWGG | 1 cut(s) | 304 |
| FaeI | CATG | 5 cut(s) | 224, 424, 560, 582, 598 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 558, 590, 813, 845 |
| FaqI | GGGAC | 1 cut(s) | 554 |
| FatI | CATG | 5 cut(s) | 220, 420, 556, 578, 594 |
| Fnu4HI | GCNGC | 3 cut(s) | 218, 444, 505 |
| FokI | GGATG | 1 cut(s) | 504 |
| Fsp4HI | GCNGC | 3 cut(s) | 218, 444, 505 |
| FspBI | CTAG | 2 cut(s) | 147, 273 |
| GlaI | GCGC | 2 cut(s) | 6, 402 |
| GluI | GCNGC | 3 cut(s) | 218, 444, 505 |
| HhaI | GCGC | 2 cut(s) | 7, 403 |
| Hin1II | CATG | 5 cut(s) | 224, 424, 560, 582, 598 |
| Hin6I | GCGC | 2 cut(s) | 5, 401 |
| HinP1I | GCGC | 2 cut(s) | 5, 401 |
| HincII | GTYRAC | 1 cut(s) | 153 |
| HindII | GTYRAC | 1 cut(s) | 153 |
| HindIII | AAGCTT | 1 cut(s) | 587 |
| HinfI | GANTC | 6 cut(s) | 269, 294, 325, 406, 535, 616 |
| HphI | GGTGA | 4 cut(s) | 80, 320, 697, 797 |
| Hpy166II | GTNNAC | 4 cut(s) | 153, 688, 710, 788 |
| Hpy188I | TCNGA | 3 cut(s) | 391, 679, 910 |
| Hpy188III | TCNNGA | 4 cut(s) | 132, 273, 283, 339 |
| Hpy8I | GTNNAC | 4 cut(s) | 153, 688, 710, 788 |
| HpyAV | CCTTC | 1 cut(s) | 644 |
| HpyCH4III | ACNGT | 4 cut(s) | 242, 628, 796, 948 |
| HpyCH4V | TGCA | 9 cut(s) | 100, 167, 195, 217, 256, 740, 833, 887, 938 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 112 |
| HpyF3I | CTNAG | 1 cut(s) | 907 |
| Hsp92II | CATG | 5 cut(s) | 224, 424, 560, 582, 598 |
| HspAI | GCGC | 2 cut(s) | 5, 401 |
| Kzo9I | GATC | 1 cut(s) | 432 |
| Lsp1109I | GCAGC | 1 cut(s) | 229 |
| LweI | GCATC | 1 cut(s) | 675 |
| MabI | ACCWGGT | 1 cut(s) | 304 |
| MaeI | CTAG | 2 cut(s) | 147, 273 |
| MaeIII | GTNAC | 4 cut(s) | 88, 129, 308, 581 |
| MalI | GATC | 1 cut(s) | 434 |
| MboI | GATC | 1 cut(s) | 432 |
| MfeI | CAATTG | 1 cut(s) | 600 |
| MflI | RGATCY | 1 cut(s) | 432 |
| MluCI | AATT | 5 cut(s) | 413, 475, 600, 729, 765 |
| MmeI | TCCRAC | 1 cut(s) | 884 |
| MnlI | CCTC | 8 cut(s) | 202, 228, 352, 582, 794, 914, 916, 957 |
| MroXI | GAANNNNTTC | 1 cut(s) | 539 |
| MseI | TTAA | 1 cut(s) | 768 |
| MspA1I | CMGCKG | 1 cut(s) | 672 |
| MspR9I | CCNGG | 1 cut(s) | 306 |
| MunI | CAATTG | 1 cut(s) | 600 |
| MvaI | CCWGG | 1 cut(s) | 306 |
| MvnI | CGCG | 1 cut(s) | 7 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 112 |
| NdeII | GATC | 1 cut(s) | 432 |
| NlaIII | CATG | 5 cut(s) | 224, 424, 560, 582, 598 |
| NmuCI | GTSAC | 2 cut(s) | 129, 308 |
| NspI | RCATGY | 1 cut(s) | 224 |
| PdmI | GAANNNNTTC | 1 cut(s) | 539 |
| PfeI | GAWTC | 6 cut(s) | 269, 294, 325, 406, 535, 616 |
| PkrI | GCNGC | 3 cut(s) | 219, 445, 506 |
| Psp6I | CCWGG | 1 cut(s) | 304 |
| PspGI | CCWGG | 1 cut(s) | 304 |
| PstNI | CAGNNNCTG | 2 cut(s) | 92, 884 |
| PsuI | RGATCY | 1 cut(s) | 432 |
| PvuII | CAGCTG | 1 cut(s) | 672 |
| RsaI | GTAC | 6 cut(s) | 419, 466, 485, 512, 550, 925 |
| RsaNI | GTAC | 6 cut(s) | 418, 465, 484, 511, 549, 924 |
| SaqAI | TTAA | 1 cut(s) | 768 |
| SatI | GCNGC | 3 cut(s) | 218, 444, 505 |
| Sau3AI | GATC | 1 cut(s) | 432 |
| ScrFI | CCNGG | 1 cut(s) | 306 |
| SexAI | ACCWGGT | 1 cut(s) | 304 |
| SfaNI | GCATC | 1 cut(s) | 675 |
| SmlI | CTYRAG | 1 cut(s) | 927 |
| SmoI | CTYRAG | 1 cut(s) | 927 |
| Sse9I | AATT | 5 cut(s) | 413, 475, 600, 729, 765 |
| SsiI | CCGC | 2 cut(s) | 444, 505 |
| SspMI | CTAG | 2 cut(s) | 147, 273 |
| StyD4I | CCNGG | 1 cut(s) | 304 |
| TaaI | ACNGT | 4 cut(s) | 242, 628, 796, 948 |
| TasI | AATT | 5 cut(s) | 413, 475, 600, 729, 765 |
| TatI | WGTACW | 1 cut(s) | 417 |
| TauI | GCSGC | 2 cut(s) | 446, 507 |
| TfiI | GAWTC | 6 cut(s) | 269, 294, 325, 406, 535, 616 |
| Tru1I | TTAA | 1 cut(s) | 768 |
| Tru9I | TTAA | 1 cut(s) | 768 |
| TscAI | CASTG | 1 cut(s) | 202 |
| TseFI | GTSAC | 2 cut(s) | 129, 308 |
| TseI | GCWGC | 1 cut(s) | 217 |
| Tsp45I | GTSAC | 2 cut(s) | 129, 308 |
| TspDTI | ATGAA | 6 cut(s) | 65, 437, 488, 532, 537, 687 |
| TspGWI | ACGGA | 1 cut(s) | 928 |
| TspRI | CASTG | 1 cut(s) | 202 |
| XbaI | TCTAGA | 1 cut(s) | 272 |
| XceI | RCATGY | 1 cut(s) | 224 |
| XmnI | GAANNNNTTC | 1 cut(s) | 539 |
| XspI | CTAG | 2 cut(s) | 147, 273 |