DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| REPA_OB_2 | PF16900 | 60 - 143 | 9.6e-07 | Replication protein A OB domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 433, 458 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 145 |
| AciI | CCGC | 1 cut(s) | 371 |
| AcsI | RAATTY | 2 cut(s) | 120, 410 |
| AfaI | GTAC | 1 cut(s) | 21 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 145 |
| AflII | CTTAAG | 1 cut(s) | 289 |
| AgsI | TTSAA | 4 cut(s) | 60, 94, 400, 415 |
| AluBI | AGCT | 4 cut(s) | 68, 111, 160, 353 |
| AluI | AGCT | 4 cut(s) | 68, 111, 160, 353 |
| ApoI | RAATTY | 2 cut(s) | 120, 410 |
| AseI | ATTAAT | 1 cut(s) | 174 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 410 |
| AsuHPI | GGTGA | 1 cut(s) | 397 |
| BccI | CCATC | 1 cut(s) | 147 |
| BfaI | CTAG | 1 cut(s) | 333 |
| BfrI | CTTAAG | 1 cut(s) | 289 |
| BfuAI | ACCTGC | 2 cut(s) | 433, 458 |
| BglII | AGATCT | 1 cut(s) | 196 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 145 |
| Bse1I | ACTGG | 2 cut(s) | 82, 393 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 145 |
| BseNI | ACTGG | 2 cut(s) | 82, 393 |
| BsgI | GTGCAG | 1 cut(s) | 411 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 145 |
| Bsp143I | GATC | 4 cut(s) | 3, 184, 196, 273 |
| BspACI | CCGC | 1 cut(s) | 371 |
| BspMI | ACCTGC | 2 cut(s) | 433, 458 |
| BspTI | CTTAAG | 1 cut(s) | 289 |
| BsrI | ACTGG | 2 cut(s) | 82, 393 |
| BssMI | GATC | 4 cut(s) | 3, 184, 196, 273 |
| Bst4CI | ACNGT | 1 cut(s) | 155 |
| BstAFI | CTTAAG | 1 cut(s) | 289 |
| BstKTI | GATC | 4 cut(s) | 6, 187, 199, 276 |
| BstMBI | GATC | 4 cut(s) | 3, 184, 196, 273 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 450 |
| BstX2I | RGATCY | 1 cut(s) | 196 |
| BstYI | RGATCY | 1 cut(s) | 196 |
| BtsIMutI | CAGTG | 1 cut(s) | 75 |
| BveI | ACCTGC | 2 cut(s) | 433, 458 |
| Csp6I | GTAC | 1 cut(s) | 20 |
| CviAII | CATG | 1 cut(s) | 382 |
| CviJI | RGCY | 5 cut(s) | 68, 111, 160, 353, 444 |
| CviKI_1 | RGCY | 5 cut(s) | 68, 111, 160, 353, 444 |
| CviQI | GTAC | 1 cut(s) | 20 |
| DpnI | GATC | 4 cut(s) | 5, 186, 198, 275 |
| DpnII | GATC | 4 cut(s) | 3, 184, 196, 273 |
| DraI | TTTAAA | 1 cut(s) | 43 |
| EciI | GGCGGA | 1 cut(s) | 360 |
| FaeI | CATG | 1 cut(s) | 385 |
| FaiI | YATR | 7 cut(s) | 105, 224, 319, 347, 383, 447, 494 |
| FatI | CATG | 1 cut(s) | 381 |
| FspBI | CTAG | 1 cut(s) | 333 |
| Hin1II | CATG | 1 cut(s) | 385 |
| HincII | GTYRAC | 1 cut(s) | 343 |
| HindII | GTYRAC | 1 cut(s) | 343 |
| HinfI | GANTC | 2 cut(s) | 28, 135 |
| HphI | GGTGA | 1 cut(s) | 397 |
| Hpy166II | GTNNAC | 2 cut(s) | 52, 343 |
| Hpy188III | TCNNGA | 2 cut(s) | 32, 467 |
| Hpy8I | GTNNAC | 2 cut(s) | 52, 343 |
| HpyAV | CCTTC | 1 cut(s) | 245 |
| HpyCH4III | ACNGT | 1 cut(s) | 155 |
| HpyCH4V | TGCA | 2 cut(s) | 428, 453 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 450 |
| Hsp92II | CATG | 1 cut(s) | 385 |
| Kzo9I | GATC | 4 cut(s) | 3, 184, 196, 273 |
| LmnI | GCTCC | 1 cut(s) | 105 |
| LpnPI | CCDG | 7 cut(s) | 63, 406, 438, 454, 463, 480, 489 |
| MaeI | CTAG | 1 cut(s) | 333 |
| MalI | GATC | 4 cut(s) | 5, 186, 198, 275 |
| MboI | GATC | 4 cut(s) | 3, 184, 196, 273 |
| MboII | GAAGA | 3 cut(s) | 179, 311, 418 |
| MfeI | CAATTG | 1 cut(s) | 228 |
| MflI | RGATCY | 1 cut(s) | 196 |
| MluCI | AATT | 5 cut(s) | 55, 120, 228, 410, 495 |
| MlyI | GAGTC | 1 cut(s) | 37 |
| MnlI | CCTC | 5 cut(s) | 28, 226, 378, 442, 472 |
| MroXI | GAANNNNTTC | 1 cut(s) | 410 |
| MseI | TTAA | 6 cut(s) | 15, 42, 174, 240, 263, 290 |
| MspA1I | CMGCKG | 1 cut(s) | 160 |
| MspCI | CTTAAG | 1 cut(s) | 289 |
| MunI | CAATTG | 1 cut(s) | 228 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 450 |
| NdeII | GATC | 4 cut(s) | 3, 184, 196, 273 |
| NlaIII | CATG | 1 cut(s) | 385 |
| PdmI | GAANNNNTTC | 1 cut(s) | 410 |
| PfeI | GAWTC | 1 cut(s) | 135 |
| PflFI | GACNNNGTC | 1 cut(s) | 27 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 145 |
| PleI | GAGTC | 1 cut(s) | 36 |
| PpsI | GAGTC | 1 cut(s) | 36 |
| PshBI | ATTAAT | 1 cut(s) | 174 |
| PsuI | RGATCY | 1 cut(s) | 196 |
| PsyI | GACNNNGTC | 1 cut(s) | 27 |
| PvuII | CAGCTG | 1 cut(s) | 160 |
| RsaI | GTAC | 1 cut(s) | 21 |
| RsaNI | GTAC | 1 cut(s) | 20 |
| SaqAI | TTAA | 6 cut(s) | 15, 42, 174, 240, 263, 290 |
| Sau3AI | GATC | 4 cut(s) | 3, 184, 196, 273 |
| SchI | GAGTC | 1 cut(s) | 37 |
| SetI | ASST | 6 cut(s) | 70, 113, 162, 355, 427, 452 |
| SmlI | CTYRAG | 1 cut(s) | 289 |
| SmoI | CTYRAG | 1 cut(s) | 289 |
| Sse9I | AATT | 5 cut(s) | 55, 120, 228, 410, 495 |
| SsiI | CCGC | 1 cut(s) | 371 |
| SspMI | CTAG | 1 cut(s) | 333 |
| TaaI | ACNGT | 1 cut(s) | 155 |
| TaqI | TCGA | 1 cut(s) | 357 |
| TasI | AATT | 5 cut(s) | 55, 120, 228, 410, 495 |
| TfiI | GAWTC | 1 cut(s) | 135 |
| Tru1I | TTAA | 6 cut(s) | 15, 42, 174, 240, 263, 290 |
| Tru9I | TTAA | 6 cut(s) | 15, 42, 174, 240, 263, 290 |
| TscAI | CASTG | 1 cut(s) | 82 |
| TspDTI | ATGAA | 1 cut(s) | 448 |
| TspRI | CASTG | 1 cut(s) | 82 |
| Tth111I | GACNNNGTC | 1 cut(s) | 27 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 145 |
| Vha464I | CTTAAG | 1 cut(s) | 289 |
| VspI | ATTAAT | 1 cut(s) | 174 |
| XapI | RAATTY | 2 cut(s) | 120, 410 |
| XmnI | GAANNNNTTC | 1 cut(s) | 410 |
| XspI | CTAG | 1 cut(s) | 333 |