DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 15 - 104 | 2.1e-09 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 29 |
| AcsI | RAATTY | 1 cut(s) | 137 |
| AgsI | TTSAA | 2 cut(s) | 48, 363 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 243, 275 |
| AluBI | AGCT | 4 cut(s) | 99, 112, 170, 270 |
| AluI | AGCT | 4 cut(s) | 99, 112, 170, 270 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 270 |
| AoxI | GGCC | 1 cut(s) | 343 |
| ApeKI | GCWGC | 3 cut(s) | 151, 264, 267 |
| ApoI | RAATTY | 1 cut(s) | 137 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuII | TTCGAA | 1 cut(s) | 20 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BbsI | GAAGAC | 1 cut(s) | 247 |
| BbvI | GCAGC | 3 cut(s) | 163, 276, 279 |
| BccI | CCATC | 2 cut(s) | 229, 375 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 121, 155 |
| BfmI | CTRYAG | 1 cut(s) | 52 |
| BisI | GCNGC | 3 cut(s) | 152, 265, 268 |
| BlsI | GCNGC | 3 cut(s) | 153, 266, 269 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmsI | GCATC | 1 cut(s) | 196 |
| BpiI | GAAGAC | 1 cut(s) | 247 |
| Bpu14I | TTCGAA | 1 cut(s) | 20 |
| Bse3DI | GCAATG | 1 cut(s) | 139 |
| BseGI | GGATG | 1 cut(s) | 211 |
| BseMI | GCAATG | 1 cut(s) | 139 |
| BseXI | GCAGC | 3 cut(s) | 163, 276, 279 |
| BsgI | GTGCAG | 1 cut(s) | 170 |
| BshFI | GGCC | 1 cut(s) | 345 |
| BsnI | GGCC | 1 cut(s) | 345 |
| Bsp119I | TTCGAA | 1 cut(s) | 20 |
| Bsp143I | GATC | 1 cut(s) | 293 |
| BspANI | GGCC | 1 cut(s) | 345 |
| BspQI | GCTCTTC | 1 cut(s) | 177 |
| BspT104I | TTCGAA | 1 cut(s) | 20 |
| BsrDI | GCAATG | 1 cut(s) | 139 |
| BssMI | GATC | 1 cut(s) | 293 |
| Bst4CI | ACNGT | 1 cut(s) | 226 |
| Bst6I | CTCTTC | 2 cut(s) | 177, 318 |
| BstBI | TTCGAA | 1 cut(s) | 20 |
| BstC8I | GCNNGC | 1 cut(s) | 91 |
| BstDEI | CTNAG | 1 cut(s) | 280 |
| BstF5I | GGATG | 1 cut(s) | 211 |
| BstKTI | GATC | 1 cut(s) | 296 |
| BstMBI | GATC | 1 cut(s) | 293 |
| BstNSI | RCATGY | 1 cut(s) | 93 |
| BstSFI | CTRYAG | 1 cut(s) | 52 |
| BstV1I | GCAGC | 3 cut(s) | 163, 276, 279 |
| BstV2I | GAAGAC | 1 cut(s) | 247 |
| BsuRI | GGCC | 1 cut(s) | 345 |
| BtsCI | GGATG | 1 cut(s) | 211 |
| BtsI | GCAGTG | 1 cut(s) | 314 |
| BtsIMutI | CAGTG | 1 cut(s) | 314 |
| Cac8I | GCNNGC | 1 cut(s) | 91 |
| CaiI | CAGNNNCTG | 1 cut(s) | 270 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| CviAII | CATG | 5 cut(s) | 8, 34, 90, 155, 177 |
| CviJI | RGCY | 5 cut(s) | 99, 112, 170, 270, 345 |
| CviKI_1 | RGCY | 5 cut(s) | 99, 112, 170, 270, 345 |
| DdeI | CTNAG | 1 cut(s) | 280 |
| DpnI | GATC | 1 cut(s) | 295 |
| DpnII | GATC | 1 cut(s) | 293 |
| Eam1104I | CTCTTC | 2 cut(s) | 177, 318 |
| EarI | CTCTTC | 2 cut(s) | 177, 318 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| EcoRI | GAATTC | 1 cut(s) | 137 |
| FaeI | CATG | 5 cut(s) | 11, 37, 93, 158, 180 |
| FatI | CATG | 5 cut(s) | 7, 33, 89, 154, 176 |
| Fnu4HI | GCNGC | 3 cut(s) | 152, 265, 268 |
| FokI | GGATG | 1 cut(s) | 218 |
| Fsp4HI | GCNGC | 3 cut(s) | 152, 265, 268 |
| GluI | GCNGC | 3 cut(s) | 152, 265, 268 |
| HaeIII | GGCC | 1 cut(s) | 345 |
| Hin1II | CATG | 5 cut(s) | 11, 37, 93, 158, 180 |
| HinfI | GANTC | 3 cut(s) | 57, 186, 374 |
| Hpy166II | GTNNAC | 1 cut(s) | 286 |
| Hpy188III | TCNNGA | 2 cut(s) | 275, 378 |
| Hpy8I | GTNNAC | 1 cut(s) | 286 |
| HpyCH4III | ACNGT | 1 cut(s) | 226 |
| HpyCH4V | TGCA | 1 cut(s) | 151 |
| HpyF3I | CTNAG | 1 cut(s) | 280 |
| Hsp92II | CATG | 5 cut(s) | 11, 37, 93, 158, 180 |
| Kzo9I | GATC | 1 cut(s) | 293 |
| LguI | GCTCTTC | 1 cut(s) | 177 |
| LpnPI | CCDG | 2 cut(s) | 333, 359 |
| Lsp1109I | GCAGC | 3 cut(s) | 163, 276, 279 |
| LweI | GCATC | 1 cut(s) | 196 |
| MaeIII | GTNAC | 2 cut(s) | 101, 179 |
| MalI | GATC | 1 cut(s) | 295 |
| MboI | GATC | 1 cut(s) | 293 |
| MboII | GAAGA | 3 cut(s) | 164, 252, 335 |
| MluCI | AATT | 2 cut(s) | 137, 254 |
| MlyI | GAGTC | 1 cut(s) | 195 |
| MmeI | TCCRAC | 1 cut(s) | 326 |
| MnlI | CCTC | 2 cut(s) | 196, 319 |
| MspA1I | CMGCKG | 1 cut(s) | 270 |
| NdeII | GATC | 1 cut(s) | 293 |
| NlaIII | CATG | 5 cut(s) | 11, 37, 93, 158, 180 |
| NspI | RCATGY | 1 cut(s) | 93 |
| NspV | TTCGAA | 1 cut(s) | 20 |
| PaeI | GCATGC | 1 cut(s) | 93 |
| PciSI | GCTCTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 2 cut(s) | 57, 374 |
| PkrI | GCNGC | 3 cut(s) | 153, 266, 269 |
| PleI | GAGTC | 1 cut(s) | 194 |
| PpsI | GAGTC | 1 cut(s) | 194 |
| PsiI | TTATAA | 1 cut(s) | 29 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PstNI | CAGNNNCTG | 1 cut(s) | 270 |
| PvuII | CAGCTG | 1 cut(s) | 270 |
| SapI | GCTCTTC | 1 cut(s) | 177 |
| SatI | GCNGC | 3 cut(s) | 152, 265, 268 |
| Sau3AI | GATC | 1 cut(s) | 293 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SchI | GAGTC | 1 cut(s) | 195 |
| SetI | ASST | 6 cut(s) | 101, 114, 172, 272, 330, 358 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SfcI | CTRYAG | 1 cut(s) | 52 |
| SfuI | TTCGAA | 1 cut(s) | 20 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SphI | GCATGC | 1 cut(s) | 93 |
| Sse9I | AATT | 2 cut(s) | 137, 254 |
| TaaI | ACNGT | 1 cut(s) | 226 |
| TaqI | TCGA | 2 cut(s) | 20, 379 |
| TasI | AATT | 2 cut(s) | 137, 254 |
| TfiI | GAWTC | 2 cut(s) | 57, 374 |
| TscAI | CASTG | 1 cut(s) | 321 |
| TseI | GCWGC | 3 cut(s) | 151, 264, 267 |
| TspDTI | ATGAA | 1 cut(s) | 150 |
| TspRI | CASTG | 1 cut(s) | 321 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XapI | RAATTY | 1 cut(s) | 137 |
| XceI | RCATGY | 1 cut(s) | 93 |