DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 59 - 163 | 1.1e-08 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 580 |
| AciI | CCGC | 2 cut(s) | 243, 580 |
| AclWI | GGATC | 3 cut(s) | 110, 123, 154 |
| AcoI | YGGCCR | 1 cut(s) | 53 |
| AcuI | CTGAAG | 1 cut(s) | 245 |
| AfaI | GTAC | 2 cut(s) | 33, 42 |
| AgsI | TTSAA | 5 cut(s) | 49, 101, 207, 473, 611 |
| AluBI | AGCT | 4 cut(s) | 13, 281, 499, 626 |
| AluI | AGCT | 4 cut(s) | 13, 281, 499, 626 |
| Alw26I | GTCTC | 2 cut(s) | 346, 665 |
| AlwI | GGATC | 3 cut(s) | 110, 123, 154 |
| AoxI | GGCC | 1 cut(s) | 53 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 288, 320 |
| AseI | ATTAAT | 1 cut(s) | 251 |
| AsuHPI | GGTGA | 3 cut(s) | 257, 298, 406 |
| BamHI | GGATCC | 1 cut(s) | 115 |
| BbsI | GAAGAC | 1 cut(s) | 452 |
| BccI | CCATC | 2 cut(s) | 340, 496 |
| BceAI | ACGGC | 1 cut(s) | 68 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 675, 709 |
| BciVI | GTATCC | 1 cut(s) | 420 |
| BcoDI | GTCTC | 2 cut(s) | 346, 665 |
| BfuI | GTATCC | 1 cut(s) | 420 |
| BglII | AGATCT | 1 cut(s) | 388 |
| BisI | GCNGC | 1 cut(s) | 581 |
| BlpI | GCTNAGC | 1 cut(s) | 14 |
| BlsI | GCNGC | 1 cut(s) | 582 |
| BmcAI | AGTACT | 1 cut(s) | 33 |
| BmiI | GGNNCC | 1 cut(s) | 117 |
| BmsI | GCATC | 4 cut(s) | 384, 548, 642, 707 |
| BpiI | GAAGAC | 1 cut(s) | 452 |
| BpmI | CTGGAG | 2 cut(s) | 149, 596 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 14 |
| BsaBI | GATNNNNATC | 1 cut(s) | 324 |
| BsaI | GGTCTC | 1 cut(s) | 665 |
| Bse1I | ACTGG | 3 cut(s) | 166, 173, 579 |
| Bse3DI | GCAATG | 1 cut(s) | 693 |
| Bse8I | GATNNNNATC | 1 cut(s) | 324 |
| BseJI | GATNNNNATC | 1 cut(s) | 324 |
| BseMI | GCAATG | 1 cut(s) | 693 |
| BseMII | CTCAG | 2 cut(s) | 5, 636 |
| BseNI | ACTGG | 3 cut(s) | 166, 173, 579 |
| BshFI | GGCC | 1 cut(s) | 55 |
| BsmAI | GTCTC | 2 cut(s) | 346, 665 |
| BsnI | GGCC | 1 cut(s) | 55 |
| Bso31I | GGTCTC | 1 cut(s) | 665 |
| Bsp143I | GATC | 3 cut(s) | 115, 159, 388 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 14 |
| BspACI | CCGC | 2 cut(s) | 243, 580 |
| BspANI | GGCC | 1 cut(s) | 55 |
| BspCNI | CTCAG | 2 cut(s) | 6, 637 |
| BspLI | GGNNCC | 1 cut(s) | 117 |
| BspPI | GGATC | 3 cut(s) | 110, 123, 154 |
| BspTNI | GGTCTC | 1 cut(s) | 665 |
| BsrBI | CCGCTC | 1 cut(s) | 580 |
| BsrDI | GCAATG | 1 cut(s) | 693 |
| BsrI | ACTGG | 3 cut(s) | 166, 173, 579 |
| BssMI | GATC | 3 cut(s) | 115, 159, 388 |
| Bst4CI | ACNGT | 3 cut(s) | 142, 481, 568 |
| Bst6I | CTCTTC | 2 cut(s) | 60, 429 |
| BstC8I | GCNNGC | 3 cut(s) | 423, 497, 721 |
| BstDEI | CTNAG | 2 cut(s) | 14, 645 |
| BstKTI | GATC | 3 cut(s) | 118, 162, 391 |
| BstMAI | GTCTC | 2 cut(s) | 346, 665 |
| BstMBI | GATC | 3 cut(s) | 115, 159, 388 |
| BstV2I | GAAGAC | 1 cut(s) | 452 |
| BstX2I | RGATCY | 2 cut(s) | 115, 388 |
| BstYI | RGATCY | 2 cut(s) | 115, 388 |
| BsuI | GTATCC | 1 cut(s) | 420 |
| BsuRI | GGCC | 1 cut(s) | 55 |
| BtsI | GCAGTG | 1 cut(s) | 150 |
| BtsIMutI | CAGTG | 5 cut(s) | 147, 150, 564, 572, 711 |
| Cac8I | GCNNGC | 3 cut(s) | 423, 497, 721 |
| Csp6I | GTAC | 2 cut(s) | 32, 41 |
| CviAII | CATG | 4 cut(s) | 130, 266, 288, 680 |
| CviJI | RGCY | 9 cut(s) | 13, 55, 201, 281, 499, 583, 626, 643, 656 |
| CviKI_1 | RGCY | 9 cut(s) | 13, 55, 201, 281, 499, 583, 626, 643, 656 |
| CviQI | GTAC | 2 cut(s) | 32, 41 |
| DdeI | CTNAG | 2 cut(s) | 14, 645 |
| DpnI | GATC | 3 cut(s) | 117, 161, 390 |
| DpnII | GATC | 3 cut(s) | 115, 159, 388 |
| DraI | TTTAAA | 1 cut(s) | 217 |
| EaeI | YGGCCR | 1 cut(s) | 53 |
| Eam1104I | CTCTTC | 2 cut(s) | 60, 429 |
| EarI | CTCTTC | 2 cut(s) | 60, 429 |
| Eco31I | GGTCTC | 1 cut(s) | 665 |
| Eco32I | GATATC | 1 cut(s) | 693 |
| Eco57I | CTGAAG | 1 cut(s) | 245 |
| EcoRV | GATATC | 1 cut(s) | 693 |
| FaeI | CATG | 4 cut(s) | 133, 269, 291, 683 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 80, 112, 518, 550 |
| FatI | CATG | 4 cut(s) | 129, 265, 287, 679 |
| Fnu4HI | GCNGC | 1 cut(s) | 581 |
| Fsp4HI | GCNGC | 1 cut(s) | 581 |
| GluI | GCNGC | 1 cut(s) | 581 |
| GsuI | CTGGAG | 2 cut(s) | 149, 596 |
| HaeIII | GGCC | 1 cut(s) | 55 |
| Hin1II | CATG | 4 cut(s) | 133, 269, 291, 683 |
| HindIII | AAGCTT | 1 cut(s) | 624 |
| HphI | GGTGA | 3 cut(s) | 257, 298, 406 |
| Hpy166II | GTNNAC | 1 cut(s) | 397 |
| Hpy188I | TCNGA | 2 cut(s) | 345, 509 |
| Hpy188III | TCNNGA | 3 cut(s) | 119, 314, 386 |
| Hpy8I | GTNNAC | 1 cut(s) | 397 |
| HpyAV | CCTTC | 1 cut(s) | 661 |
| HpyCH4III | ACNGT | 3 cut(s) | 142, 481, 568 |
| HpyCH4V | TGCA | 4 cut(s) | 150, 274, 539, 633 |
| HpyF3I | CTNAG | 2 cut(s) | 14, 645 |
| Hsp92II | CATG | 4 cut(s) | 133, 269, 291, 683 |
| Kzo9I | GATC | 3 cut(s) | 115, 159, 388 |
| LmnI | GCTCC | 2 cut(s) | 577, 683 |
| LweI | GCATC | 4 cut(s) | 384, 548, 642, 707 |
| MaeIII | GTNAC | 3 cut(s) | 290, 304, 568 |
| MalI | GATC | 3 cut(s) | 117, 161, 390 |
| MbiI | CCGCTC | 1 cut(s) | 580 |
| MboI | GATC | 3 cut(s) | 115, 159, 388 |
| MboII | GAAGA | 3 cut(s) | 77, 446, 457 |
| MfeI | CAATTG | 1 cut(s) | 379 |
| MflI | RGATCY | 2 cut(s) | 115, 388 |
| MluCI | AATT | 4 cut(s) | 101, 248, 252, 379 |
| MmeI | TCCRAC | 2 cut(s) | 437, 611 |
| MnlI | CCTC | 3 cut(s) | 173, 191, 229 |
| MseI | TTAA | 4 cut(s) | 104, 216, 251, 441 |
| MslI | CAYNNNNRTG | 1 cut(s) | 344 |
| MspA1I | CMGCKG | 1 cut(s) | 243 |
| MunI | CAATTG | 1 cut(s) | 379 |
| NdeII | GATC | 3 cut(s) | 115, 159, 388 |
| NlaIII | CATG | 4 cut(s) | 133, 269, 291, 683 |
| NlaIV | GGNNCC | 1 cut(s) | 117 |
| NmuCI | GTSAC | 1 cut(s) | 304 |
| PkrI | GCNGC | 1 cut(s) | 582 |
| PshBI | ATTAAT | 1 cut(s) | 251 |
| PspN4I | GGNNCC | 1 cut(s) | 117 |
| PsuI | RGATCY | 2 cut(s) | 115, 388 |
| RsaI | GTAC | 2 cut(s) | 33, 42 |
| RsaNI | GTAC | 2 cut(s) | 32, 41 |
| RseI | CAYNNNNRTG | 1 cut(s) | 344 |
| SaqAI | TTAA | 4 cut(s) | 104, 216, 251, 441 |
| SatI | GCNGC | 1 cut(s) | 581 |
| Sau3AI | GATC | 3 cut(s) | 115, 159, 388 |
| ScaI | AGTACT | 1 cut(s) | 33 |
| SetI | ASST | 6 cut(s) | 15, 46, 283, 464, 501, 628 |
| SfaNI | GCATC | 4 cut(s) | 384, 548, 642, 707 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 344 |
| Sse9I | AATT | 4 cut(s) | 101, 248, 252, 379 |
| SsiI | CCGC | 2 cut(s) | 243, 580 |
| TaaI | ACNGT | 3 cut(s) | 142, 481, 568 |
| TaqI | TCGA | 2 cut(s) | 158, 313 |
| TasI | AATT | 4 cut(s) | 101, 248, 252, 379 |
| TatI | WGTACW | 1 cut(s) | 31 |
| TauI | GCSGC | 1 cut(s) | 583 |
| Tru1I | TTAA | 4 cut(s) | 104, 216, 251, 441 |
| Tru9I | TTAA | 4 cut(s) | 104, 216, 251, 441 |
| TscAI | CASTG | 5 cut(s) | 147, 157, 571, 579, 711 |
| TseFI | GTSAC | 1 cut(s) | 304 |
| Tsp45I | GTSAC | 1 cut(s) | 304 |
| TspDTI | ATGAA | 4 cut(s) | 17, 86, 146, 471 |
| TspRI | CASTG | 5 cut(s) | 147, 157, 571, 579, 711 |
| VspI | ATTAAT | 1 cut(s) | 251 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 571 |
| ZrmI | AGTACT | 1 cut(s) | 33 |