DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 938 |
| AccI | GTMKAC | 1 cut(s) | 819 |
| AciI | CCGC | 2 cut(s) | 263, 858 |
| AclWI | GGATC | 5 cut(s) | 635, 759, 785, 940, 1193 |
| AcsI | RAATTY | 6 cut(s) | 14, 236, 296, 408, 515, 715 |
| AcuI | CTGAAG | 1 cut(s) | 920 |
| AfaI | GTAC | 4 cut(s) | 396, 549, 616, 869 |
| AgsI | TTSAA | 6 cut(s) | 19, 92, 223, 724, 781, 834 |
| AjnI | CCWGG | 1 cut(s) | 688 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1029, 1061 |
| AluBI | AGCT | 6 cut(s) | 319, 530, 956, 1258, 1301, 1384 |
| AluI | AGCT | 6 cut(s) | 319, 530, 956, 1258, 1301, 1384 |
| Alw21I | GWGCWC | 2 cut(s) | 558, 1303 |
| Alw26I | GTCTC | 1 cut(s) | 687 |
| AlwI | GGATC | 5 cut(s) | 635, 759, 785, 940, 1193 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1056 |
| Ama87I | CYCGRG | 1 cut(s) | 434 |
| AoxI | GGCC | 3 cut(s) | 37, 338, 686 |
| ApeKI | GCWGC | 2 cut(s) | 1050, 1384 |
| ApoI | RAATTY | 6 cut(s) | 14, 236, 296, 408, 515, 715 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1176, 1208 |
| AspS9I | GGNCC | 1 cut(s) | 338 |
| AsuHPI | GGTGA | 5 cut(s) | 80, 164, 512, 559, 1046 |
| AvaI | CYCGRG | 1 cut(s) | 434 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 859, 892 |
| BanII | GRGCYC | 1 cut(s) | 1303 |
| BbsI | GAAGAC | 1 cut(s) | 918 |
| Bbv12I | GWGCWC | 2 cut(s) | 558, 1303 |
| BbvI | GCAGC | 2 cut(s) | 1062, 1371 |
| BccI | CCATC | 4 cut(s) | 29, 118, 449, 616 |
| BciT130I | CCWGG | 1 cut(s) | 690 |
| BclI | TGATCA | 1 cut(s) | 301 |
| BcoDI | GTCTC | 1 cut(s) | 687 |
| BfuAI | ACCTGC | 1 cut(s) | 938 |
| BglII | AGATCT | 2 cut(s) | 478, 1063 |
| BisI | GCNGC | 3 cut(s) | 859, 1051, 1385 |
| BlsI | GCNGC | 3 cut(s) | 860, 1052, 1386 |
| Bme1390I | CCNGG | 1 cut(s) | 690 |
| BmeT110I | CYCGRG | 1 cut(s) | 434 |
| BmgT120I | GGNCC | 1 cut(s) | 338 |
| BmrFI | CCNGG | 1 cut(s) | 690 |
| BmsI | GCATC | 1 cut(s) | 61 |
| BpiI | GAAGAC | 1 cut(s) | 918 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 465, 497, 568, 600, 570, 602 |
| BpuEI | CTTGAG | 2 cut(s) | 667, 731 |
| Bsa29I | ATCGAT | 1 cut(s) | 198 |
| BsaWI | WCCGGW | 1 cut(s) | 397 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 684, 714 |
| Bse1I | ACTGG | 4 cut(s) | 551, 570, 1141, 1179 |
| Bse3DI | GCAATG | 2 cut(s) | 825, 1100 |
| BseBI | CCWGG | 1 cut(s) | 690 |
| BseCI | ATCGAT | 1 cut(s) | 198 |
| BseMI | GCAATG | 2 cut(s) | 825, 1100 |
| BseMII | CTCAG | 4 cut(s) | 15, 458, 1278, 1403 |
| BseNI | ACTGG | 4 cut(s) | 551, 570, 1141, 1179 |
| BseXI | GCAGC | 2 cut(s) | 1062, 1371 |
| BsgI | GTGCAG | 2 cut(s) | 333, 916 |
| BshFI | GGCC | 3 cut(s) | 39, 340, 688 |
| BshVI | ATCGAT | 1 cut(s) | 198 |
| BsiHKAI | GWGCWC | 2 cut(s) | 558, 1303 |
| BsiHKCI | CYCGRG | 1 cut(s) | 434 |
| BsiSI | CCGG | 1 cut(s) | 398 |
| BslFI | GGGAC | 1 cut(s) | 1178 |
| BsmAI | GTCTC | 1 cut(s) | 687 |
| BsmFI | GGGAC | 1 cut(s) | 1178 |
| BsmI | GAATGC | 2 cut(s) | 277, 787 |
| BsnI | GGCC | 3 cut(s) | 39, 340, 688 |
| BsoBI | CYCGRG | 1 cut(s) | 434 |
| Bsp1286I | GDGCHC | 2 cut(s) | 558, 1303 |
| BspACI | CCGC | 2 cut(s) | 263, 858 |
| BspANI | GGCC | 3 cut(s) | 39, 340, 688 |
| BspCNI | CTCAG | 4 cut(s) | 16, 459, 1277, 1402 |
| BspDI | ATCGAT | 1 cut(s) | 198 |
| BspHI | TCATGA | 1 cut(s) | 202 |
| BspMI | ACCTGC | 1 cut(s) | 938 |
| BspPI | GGATC | 5 cut(s) | 635, 759, 785, 940, 1193 |
| BsrDI | GCAATG | 2 cut(s) | 825, 1100 |
| BsrI | ACTGG | 4 cut(s) | 551, 570, 1141, 1179 |
| Bst2UI | CCWGG | 1 cut(s) | 690 |
| Bst4CI | ACNGT | 6 cut(s) | 377, 547, 769, 817, 1012, 1169 |
| Bst6I | CTCTTC | 1 cut(s) | 466 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 358 |
| BstC8I | GCNNGC | 4 cut(s) | 41, 558, 942, 1291 |
| BstDEI | CTNAG | 5 cut(s) | 24, 467, 936, 1264, 1389 |
| BstMAI | GTCTC | 1 cut(s) | 687 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 80, 358, 1255 |
| BstNI | CCWGG | 1 cut(s) | 690 |
| BstNSI | RCATGY | 1 cut(s) | 944 |
| BstSCI | CCNGG | 1 cut(s) | 688 |
| BstV1I | GCAGC | 2 cut(s) | 1062, 1371 |
| BstV2I | GAAGAC | 1 cut(s) | 918 |
| BstX2I | RGATCY | 3 cut(s) | 478, 1063, 1198 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 124 |
| BstYI | RGATCY | 3 cut(s) | 478, 1063, 1198 |
| Bsu15I | ATCGAT | 1 cut(s) | 198 |
| BsuRI | GGCC | 3 cut(s) | 39, 340, 688 |
| BsuTUI | ATCGAT | 1 cut(s) | 198 |
| BtsI | GCAGTG | 1 cut(s) | 272 |
| BtsIMutI | CAGTG | 7 cut(s) | 21, 272, 341, 558, 1017, 1174, 1217 |
| BveI | ACCTGC | 1 cut(s) | 938 |
| Cac8I | GCNNGC | 4 cut(s) | 41, 558, 942, 1291 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1056 |
| CciI | TCATGA | 1 cut(s) | 202 |
| Cfr13I | GGNCC | 1 cut(s) | 338 |
| ClaI | ATCGAT | 1 cut(s) | 198 |
| Csp6I | GTAC | 4 cut(s) | 395, 548, 615, 868 |
| CviAII | CATG | 6 cut(s) | 80, 203, 941, 963, 1021, 1286 |
| CviQI | GTAC | 4 cut(s) | 395, 548, 615, 868 |
| DdeI | CTNAG | 5 cut(s) | 24, 467, 936, 1264, 1389 |
| DraI | TTTAAA | 1 cut(s) | 592 |
| Eam1104I | CTCTTC | 1 cut(s) | 466 |
| EarI | CTCTTC | 1 cut(s) | 466 |
| Ecl136II | GAGCTC | 1 cut(s) | 1301 |
| Eco24I | GRGCYC | 1 cut(s) | 1303 |
| Eco53kI | GAGCTC | 1 cut(s) | 1301 |
| Eco57I | CTGAAG | 1 cut(s) | 920 |
| Eco88I | CYCGRG | 1 cut(s) | 434 |
| EcoICRI | GAGCTC | 1 cut(s) | 1301 |
| EcoRI | GAATTC | 2 cut(s) | 14, 408 |
| EcoRII | CCWGG | 1 cut(s) | 688 |
| EcoT38I | GRGCYC | 1 cut(s) | 1303 |
| FaeI | CATG | 6 cut(s) | 83, 206, 944, 966, 1024, 1289 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1053, 1085 |
| FaqI | GGGAC | 1 cut(s) | 1178 |
| FatI | CATG | 6 cut(s) | 79, 202, 940, 962, 1020, 1285 |
| FauI | CCCGC | 1 cut(s) | 270 |
| FbaI | TGATCA | 1 cut(s) | 301 |
| FblI | GTMKAC | 1 cut(s) | 819 |
| Fnu4HI | GCNGC | 3 cut(s) | 859, 1051, 1385 |
| FriOI | GRGCYC | 1 cut(s) | 1303 |
| Fsp4HI | GCNGC | 3 cut(s) | 859, 1051, 1385 |
| GluI | GCNGC | 3 cut(s) | 859, 1051, 1385 |
| HaeIII | GGCC | 3 cut(s) | 39, 340, 688 |
| HapII | CCGG | 1 cut(s) | 398 |
| Hin1II | CATG | 6 cut(s) | 83, 206, 944, 966, 1024, 1289 |
| HinfI | GANTC | 6 cut(s) | 76, 346, 437, 579, 914, 1281 |
| HpaII | CCGG | 1 cut(s) | 398 |
| HphI | GGTGA | 5 cut(s) | 80, 164, 512, 559, 1046 |
| Hpy166II | GTNNAC | 4 cut(s) | 373, 820, 1037, 1172 |
| Hpy188I | TCNGA | 6 cut(s) | 367, 536, 1267, 1315, 1345, 1392 |
| Hpy188III | TCNNGA | 9 cut(s) | 203, 251, 293, 418, 644, 794, 949, 1202, 1371 |
| Hpy8I | GTNNAC | 4 cut(s) | 373, 820, 1037, 1172 |
| HpyAV | CCTTC | 4 cut(s) | 58, 329, 1025, 1387 |
| HpyCH4III | ACNGT | 6 cut(s) | 377, 547, 769, 817, 1012, 1169 |
| HpyCH4IV | ACGT | 1 cut(s) | 522 |
| HpyCH4V | TGCA | 9 cut(s) | 43, 277, 314, 509, 653, 713, 785, 933, 1289 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 80, 358, 1255 |
| HpyF3I | CTNAG | 5 cut(s) | 24, 467, 936, 1264, 1389 |
| HpySE526I | ACGT | 1 cut(s) | 522 |
| Hsp92II | CATG | 6 cut(s) | 83, 206, 944, 966, 1024, 1289 |
| Ksp22I | TGATCA | 1 cut(s) | 301 |
| Lsp1109I | GCAGC | 2 cut(s) | 1062, 1371 |
| LweI | GCATC | 1 cut(s) | 61 |
| MaeII | ACGT | 1 cut(s) | 522 |
| MaeIII | GTNAC | 3 cut(s) | 580, 965, 1241 |
| MboII | GAAGA | 5 cut(s) | 104, 483, 488, 923, 1073 |
| MfeI | CAATTG | 2 cut(s) | 305, 390 |
| MflI | RGATCY | 3 cut(s) | 478, 1063, 1198 |
| MhlI | GDGCHC | 2 cut(s) | 558, 1303 |
| MlyI | GAGTC | 3 cut(s) | 446, 588, 908 |
| MmeI | TCCRAC | 2 cut(s) | 207, 1112 |
| MnlI | CCTC | 4 cut(s) | 1219, 1271, 1329, 1398 |
| MseI | TTAA | 7 cut(s) | 519, 591, 702, 1071, 1116, 1152, 1158 |
| MspI | CCGG | 1 cut(s) | 398 |
| MspR9I | CCNGG | 1 cut(s) | 690 |
| MunI | CAATTG | 2 cut(s) | 305, 390 |
| Mva1269I | GAATGC | 2 cut(s) | 277, 787 |
| MvaI | CCWGG | 1 cut(s) | 690 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 80, 358, 1255 |
| NlaIII | CATG | 6 cut(s) | 83, 206, 944, 966, 1024, 1289 |
| NmuCI | GTSAC | 2 cut(s) | 580, 1241 |
| NspI | RCATGY | 1 cut(s) | 944 |
| PaeI | GCATGC | 1 cut(s) | 944 |
| PaeR7I | CTCGAG | 1 cut(s) | 434 |
| PagI | TCATGA | 1 cut(s) | 202 |
| PctI | GAATGC | 2 cut(s) | 277, 787 |
| PfeI | GAWTC | 3 cut(s) | 76, 346, 1281 |
| PkrI | GCNGC | 3 cut(s) | 860, 1052, 1386 |
| PleI | GAGTC | 3 cut(s) | 445, 587, 908 |
| PpsI | GAGTC | 3 cut(s) | 445, 587, 908 |
| Psp124BI | GAGCTC | 1 cut(s) | 1303 |
| Psp6I | CCWGG | 1 cut(s) | 688 |
| PspGI | CCWGG | 1 cut(s) | 688 |
| PspPI | GGNCC | 1 cut(s) | 338 |
| PspXI | VCTCGAGB | 1 cut(s) | 434 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1056 |
| PsuI | RGATCY | 3 cut(s) | 478, 1063, 1198 |
| RsaI | GTAC | 4 cut(s) | 396, 549, 616, 869 |
| RsaNI | GTAC | 4 cut(s) | 395, 548, 615, 868 |
| SacI | GAGCTC | 1 cut(s) | 1303 |
| SaqAI | TTAA | 7 cut(s) | 519, 591, 702, 1071, 1116, 1152, 1158 |
| SatI | GCNGC | 3 cut(s) | 859, 1051, 1385 |
| Sau96I | GGNCC | 1 cut(s) | 338 |
| SchI | GAGTC | 3 cut(s) | 446, 588, 908 |
| ScrFI | CCNGG | 1 cut(s) | 690 |
| SduI | GDGCHC | 2 cut(s) | 558, 1303 |
| SfaNI | GCATC | 1 cut(s) | 61 |
| Sfr274I | CTCGAG | 1 cut(s) | 434 |
| SlaI | CTCGAG | 1 cut(s) | 434 |
| SmlI | CTYRAG | 3 cut(s) | 434, 682, 746 |
| SmoI | CTYRAG | 3 cut(s) | 434, 682, 746 |
| SphI | GCATGC | 1 cut(s) | 944 |
| SsiI | CCGC | 2 cut(s) | 263, 858 |
| SspI | AATATT | 1 cut(s) | 1189 |
| SstI | GAGCTC | 1 cut(s) | 1303 |
| StyD4I | CCNGG | 1 cut(s) | 688 |
| TaaI | ACNGT | 6 cut(s) | 377, 547, 769, 817, 1012, 1169 |
| TaiI | ACGT | 1 cut(s) | 525 |
| TaqI | TCGA | 4 cut(s) | 166, 198, 406, 435 |
| TatI | WGTACW | 1 cut(s) | 614 |
| TauI | GCSGC | 1 cut(s) | 861 |
| TfiI | GAWTC | 3 cut(s) | 76, 346, 1281 |
| Tru1I | TTAA | 7 cut(s) | 519, 591, 702, 1071, 1116, 1152, 1158 |
| Tru9I | TTAA | 7 cut(s) | 519, 591, 702, 1071, 1116, 1152, 1158 |
| TscAI | CASTG | 7 cut(s) | 28, 279, 348, 558, 1017, 1174, 1224 |
| TseFI | GTSAC | 2 cut(s) | 580, 1241 |
| TseI | GCWGC | 2 cut(s) | 1050, 1384 |
| Tsp45I | GTSAC | 2 cut(s) | 580, 1241 |
| TspDTI | ATGAA | 7 cut(s) | 68, 219, 270, 441, 622, 708, 936 |
| TspRI | CASTG | 7 cut(s) | 28, 279, 348, 558, 1017, 1174, 1224 |
| XapI | RAATTY | 6 cut(s) | 14, 236, 296, 408, 515, 715 |
| XceI | RCATGY | 1 cut(s) | 944 |
| XhoI | CTCGAG | 1 cut(s) | 434 |
| XmiI | GTMKAC | 1 cut(s) | 819 |