DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF223 | PF02721 | 4 - 105 | 1.1e-11 | Domain of unknown function DUF223 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 652, 677, 736 |
| AclWI | GGATC | 2 cut(s) | 827, 840 |
| AcsI | RAATTY | 6 cut(s) | 89, 197, 264, 368, 505, 714 |
| AfaI | GTAC | 4 cut(s) | 47, 444, 750, 863 |
| AfeI | AGCGCT | 1 cut(s) | 871 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 188 |
| AgsI | TTSAA | 8 cut(s) | 295, 314, 323, 619, 726, 791, 823, 943 |
| AjnI | CCWGG | 1 cut(s) | 881 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 520, 552, 984 |
| AluBI | AGCT | 2 cut(s) | 523, 583 |
| AluI | AGCT | 2 cut(s) | 523, 583 |
| Alw21I | GWGCWC | 1 cut(s) | 15 |
| Alw26I | GTCTC | 2 cut(s) | 119, 817 |
| AlwI | GGATC | 2 cut(s) | 827, 840 |
| Aor51HI | AGCGCT | 1 cut(s) | 871 |
| ApeKI | GCWGC | 1 cut(s) | 867 |
| ApoI | RAATTY | 6 cut(s) | 89, 197, 264, 368, 505, 714 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 318 |
| AspLEI | GCGC | 1 cut(s) | 872 |
| AspS9I | GGNCC | 1 cut(s) | 987 |
| AsuHPI | GGTGA | 2 cut(s) | 155, 157 |
| AsuII | TTCGAA | 1 cut(s) | 201 |
| AvaII | GGWCC | 1 cut(s) | 987 |
| BamHI | GGATCC | 1 cut(s) | 832 |
| Bbv12I | GWGCWC | 1 cut(s) | 15 |
| BbvI | GCAGC | 1 cut(s) | 879 |
| BccI | CCATC | 4 cut(s) | 104, 595, 769, 844 |
| BciT130I | CCWGG | 1 cut(s) | 883 |
| BclI | TGATCA | 2 cut(s) | 271, 373 |
| BcoDI | GTCTC | 2 cut(s) | 119, 817 |
| BfmI | CTRYAG | 1 cut(s) | 865 |
| BfoI | RGCGCY | 1 cut(s) | 873 |
| BfuAI | ACCTGC | 3 cut(s) | 652, 677, 736 |
| BisI | GCNGC | 1 cut(s) | 868 |
| BlsI | GCNGC | 1 cut(s) | 869 |
| Bme1390I | CCNGG | 1 cut(s) | 883 |
| Bme18I | GGWCC | 1 cut(s) | 987 |
| BmgT120I | GGNCC | 1 cut(s) | 987 |
| BmiI | GGNNCC | 3 cut(s) | 834, 988, 989 |
| BmrFI | CCNGG | 1 cut(s) | 883 |
| BmsI | GCATC | 4 cut(s) | 136, 460, 693, 908 |
| BoxI | GACNNNNGTC | 1 cut(s) | 416 |
| BpmI | CTGGAG | 1 cut(s) | 633 |
| Bpu14I | TTCGAA | 1 cut(s) | 201 |
| Bsa29I | ATCGAT | 2 cut(s) | 352, 437 |
| BsaI | GGTCTC | 1 cut(s) | 119 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 188 |
| Bse1I | ACTGG | 4 cut(s) | 317, 593, 612, 834 |
| Bse3DI | GCAATG | 1 cut(s) | 546 |
| BseBI | CCWGG | 1 cut(s) | 883 |
| BseCI | ATCGAT | 2 cut(s) | 352, 437 |
| BseGI | GGATG | 1 cut(s) | 923 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 188 |
| BseMI | GCAATG | 1 cut(s) | 546 |
| BseMII | CTCAG | 1 cut(s) | 371 |
| BseNI | ACTGG | 4 cut(s) | 317, 593, 612, 834 |
| BseRI | GAGGAG | 1 cut(s) | 491 |
| BseXI | GCAGC | 1 cut(s) | 879 |
| BsgI | GTGCAG | 1 cut(s) | 764 |
| BshVI | ATCGAT | 2 cut(s) | 352, 437 |
| BsiHKAI | GWGCWC | 1 cut(s) | 15 |
| BslFI | GGGAC | 1 cut(s) | 1000 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 188 |
| BsmAI | GTCTC | 2 cut(s) | 119, 817 |
| BsmFI | GGGAC | 1 cut(s) | 1000 |
| BsmI | GAATGC | 1 cut(s) | 332 |
| Bso31I | GGTCTC | 1 cut(s) | 119 |
| Bsp119I | TTCGAA | 1 cut(s) | 201 |
| Bsp1286I | GDGCHC | 1 cut(s) | 15 |
| Bsp143I | GATC | 4 cut(s) | 51, 271, 373, 832 |
| BspCNI | CTCAG | 1 cut(s) | 372 |
| BspDI | ATCGAT | 2 cut(s) | 352, 437 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspLI | GGNNCC | 3 cut(s) | 834, 988, 989 |
| BspMAI | CTGCAG | 1 cut(s) | 869 |
| BspMI | ACCTGC | 3 cut(s) | 652, 677, 736 |
| BspPI | GGATC | 2 cut(s) | 827, 840 |
| BspT104I | TTCGAA | 1 cut(s) | 201 |
| BspTNI | GGTCTC | 1 cut(s) | 119 |
| BsrDI | GCAATG | 1 cut(s) | 546 |
| BsrI | ACTGG | 4 cut(s) | 317, 593, 612, 834 |
| BssMI | GATC | 4 cut(s) | 51, 271, 373, 832 |
| Bst2UI | CCWGG | 1 cut(s) | 883 |
| Bst4CI | ACNGT | 3 cut(s) | 307, 811, 902 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 155, 669 |
| BstBI | TTCGAA | 1 cut(s) | 201 |
| BstDEI | CTNAG | 2 cut(s) | 380, 524 |
| BstF5I | GGATG | 1 cut(s) | 923 |
| BstH2I | RGCGCY | 1 cut(s) | 873 |
| BstHHI | GCGC | 1 cut(s) | 872 |
| BstKTI | GATC | 4 cut(s) | 54, 274, 376, 835 |
| BstMAI | GTCTC | 2 cut(s) | 119, 817 |
| BstMBI | GATC | 4 cut(s) | 51, 271, 373, 832 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 155, 669 |
| BstNI | CCWGG | 1 cut(s) | 883 |
| BstNSI | RCATGY | 2 cut(s) | 28, 158 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 416 |
| BstSCI | CCNGG | 1 cut(s) | 881 |
| BstSFI | CTRYAG | 1 cut(s) | 865 |
| BstV1I | GCAGC | 1 cut(s) | 879 |
| BstX2I | RGATCY | 1 cut(s) | 832 |
| BstYI | RGATCY | 1 cut(s) | 832 |
| Bsu15I | ATCGAT | 2 cut(s) | 352, 437 |
| BsuTUI | ATCGAT | 2 cut(s) | 352, 437 |
| BtgZI | GCGATG | 1 cut(s) | 716 |
| BtsCI | GGATG | 1 cut(s) | 923 |
| BtsIMutI | CAGTG | 3 cut(s) | 96, 600, 827 |
| BveI | ACCTGC | 3 cut(s) | 652, 677, 736 |
| CciI | TCATGA | 1 cut(s) | 274 |
| CfoI | GCGC | 1 cut(s) | 872 |
| Cfr13I | GGNCC | 1 cut(s) | 987 |
| ClaI | ATCGAT | 2 cut(s) | 352, 437 |
| Csp6I | GTAC | 4 cut(s) | 46, 443, 749, 862 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 579, 614, 714, 749 |
| CviAII | CATG | 7 cut(s) | 25, 155, 275, 391, 400, 983, 1005 |
| CviJI | RGCY | 5 cut(s) | 249, 282, 287, 523, 583 |
| CviKI_1 | RGCY | 5 cut(s) | 249, 282, 287, 523, 583 |
| CviQI | GTAC | 4 cut(s) | 46, 443, 749, 862 |
| DdeI | CTNAG | 2 cut(s) | 380, 524 |
| DpnI | GATC | 4 cut(s) | 53, 273, 375, 834 |
| DpnII | GATC | 4 cut(s) | 51, 271, 373, 832 |
| DraI | TTTAAA | 1 cut(s) | 432 |
| Eco31I | GGTCTC | 1 cut(s) | 119 |
| Eco47I | GGWCC | 1 cut(s) | 987 |
| Eco47III | AGCGCT | 1 cut(s) | 871 |
| EcoO109I | RGGNCCY | 1 cut(s) | 987 |
| EcoRI | GAATTC | 1 cut(s) | 714 |
| EcoRII | CCWGG | 1 cut(s) | 881 |
| FaeI | CATG | 6 cut(s) | 28, 158, 278, 394, 403, 986 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 293, 325 |
| FaqI | GGGAC | 1 cut(s) | 1000 |
| FatI | CATG | 6 cut(s) | 24, 154, 274, 390, 399, 982 |
| FbaI | TGATCA | 2 cut(s) | 271, 373 |
| Fnu4HI | GCNGC | 1 cut(s) | 868 |
| FokI | GGATG | 1 cut(s) | 930 |
| Fsp4HI | GCNGC | 1 cut(s) | 868 |
| GlaI | GCGC | 1 cut(s) | 871 |
| GluI | GCNGC | 1 cut(s) | 868 |
| GsuI | CTGGAG | 1 cut(s) | 633 |
| HaeII | RGCGCY | 1 cut(s) | 873 |
| HhaI | GCGC | 1 cut(s) | 872 |
| Hin1II | CATG | 6 cut(s) | 28, 158, 278, 394, 403, 986 |
| Hin6I | GCGC | 1 cut(s) | 870 |
| HinP1I | GCGC | 1 cut(s) | 870 |
| HindIII | AAGCTT | 1 cut(s) | 581 |
| HinfI | GANTC | 4 cut(s) | 38, 170, 354, 479 |
| HphI | GGTGA | 2 cut(s) | 155, 157 |
| Hpy166II | GTNNAC | 5 cut(s) | 217, 386, 736, 862, 977 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 175, 411, 781 |
| Hpy188III | TCNNGA | 8 cut(s) | 20, 69, 269, 275, 323, 344, 695, 935 |
| Hpy8I | GTNNAC | 5 cut(s) | 217, 386, 736, 862, 977 |
| HpyCH4III | ACNGT | 3 cut(s) | 307, 811, 902 |
| HpyCH4IV | ACGT | 1 cut(s) | 751 |
| HpyCH4V | TGCA | 9 cut(s) | 28, 149, 158, 451, 502, 672, 745, 867, 890 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 155, 669 |
| HpyF3I | CTNAG | 2 cut(s) | 380, 524 |
| HpySE526I | ACGT | 1 cut(s) | 751 |
| Hsp92II | CATG | 6 cut(s) | 28, 158, 278, 394, 403, 986 |
| HspAI | GCGC | 1 cut(s) | 870 |
| KflI | GGGWCCC | 1 cut(s) | 987 |
| Ksp22I | TGATCA | 2 cut(s) | 271, 373 |
| Kzo9I | GATC | 4 cut(s) | 51, 271, 373, 832 |
| LmnI | GCTCC | 1 cut(s) | 652 |
| Lsp1109I | GCAGC | 1 cut(s) | 879 |
| LweI | GCATC | 4 cut(s) | 136, 460, 693, 908 |
| MaeII | ACGT | 1 cut(s) | 751 |
| MaeIII | GTNAC | 3 cut(s) | 20, 163, 542 |
| MalI | GATC | 4 cut(s) | 53, 273, 375, 834 |
| MboI | GATC | 4 cut(s) | 51, 271, 373, 832 |
| MboII | GAAGA | 2 cut(s) | 226, 803 |
| MfeI | CAATTG | 2 cut(s) | 159, 818 |
| MflI | RGATCY | 1 cut(s) | 832 |
| MhlI | GDGCHC | 1 cut(s) | 15 |
| MlyI | GAGTC | 2 cut(s) | 47, 488 |
| MmeI | TCCRAC | 2 cut(s) | 169, 710 |
| MnlI | CCTC | 5 cut(s) | 72, 469, 597, 691, 775 |
| MroXI | GAANNNNTTC | 1 cut(s) | 318 |
| MseI | TTAA | 6 cut(s) | 93, 431, 509, 576, 608, 624 |
| MspR9I | CCNGG | 1 cut(s) | 883 |
| MunI | CAATTG | 2 cut(s) | 159, 818 |
| Mva1269I | GAATGC | 1 cut(s) | 332 |
| MvaI | CCWGG | 1 cut(s) | 883 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 155, 669 |
| NdeII | GATC | 4 cut(s) | 51, 271, 373, 832 |
| NlaIII | CATG | 6 cut(s) | 28, 158, 278, 394, 403, 986 |
| NlaIV | GGNNCC | 3 cut(s) | 834, 988, 989 |
| NmuCI | GTSAC | 3 cut(s) | 20, 163, 542 |
| NspI | RCATGY | 2 cut(s) | 28, 158 |
| NspV | TTCGAA | 1 cut(s) | 201 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 931 |
| PctI | GAATGC | 1 cut(s) | 332 |
| PdmI | GAANNNNTTC | 1 cut(s) | 318 |
| PfeI | GAWTC | 2 cut(s) | 170, 354 |
| PkrI | GCNGC | 1 cut(s) | 869 |
| PleI | GAGTC | 2 cut(s) | 46, 487 |
| PpsI | GAGTC | 2 cut(s) | 46, 487 |
| PpuMI | RGGWCCY | 1 cut(s) | 987 |
| PshAI | GACNNNNGTC | 1 cut(s) | 416 |
| Psp5II | RGGWCCY | 1 cut(s) | 987 |
| Psp6I | CCWGG | 1 cut(s) | 881 |
| PspGI | CCWGG | 1 cut(s) | 881 |
| PspN4I | GGNNCC | 3 cut(s) | 834, 988, 989 |
| PspPI | GGNCC | 1 cut(s) | 987 |
| PspPPI | RGGWCCY | 1 cut(s) | 987 |
| PstI | CTGCAG | 1 cut(s) | 869 |
| PsuI | RGATCY | 1 cut(s) | 832 |
| RsaI | GTAC | 4 cut(s) | 47, 444, 750, 863 |
| RsaNI | GTAC | 4 cut(s) | 46, 443, 749, 862 |
| SaqAI | TTAA | 6 cut(s) | 93, 431, 509, 576, 608, 624 |
| SatI | GCNGC | 1 cut(s) | 868 |
| Sau3AI | GATC | 4 cut(s) | 51, 271, 373, 832 |
| Sau96I | GGNCC | 1 cut(s) | 987 |
| SchI | GAGTC | 2 cut(s) | 47, 488 |
| ScrFI | CCNGG | 1 cut(s) | 883 |
| SduI | GDGCHC | 1 cut(s) | 15 |
| SetI | ASST | 9 cut(s) | 60, 448, 525, 585, 646, 671, 750, 754, 887 |
| SfaNI | GCATC | 4 cut(s) | 136, 460, 693, 908 |
| SfcI | CTRYAG | 1 cut(s) | 865 |
| SfuI | TTCGAA | 1 cut(s) | 201 |
| SinI | GGWCC | 1 cut(s) | 987 |
| SspI | AATATT | 1 cut(s) | 632 |
| StyD4I | CCNGG | 1 cut(s) | 881 |
| TaaI | ACNGT | 3 cut(s) | 307, 811, 902 |
| TaiI | ACGT | 1 cut(s) | 754 |
| TaqI | TCGA | 5 cut(s) | 201, 352, 437, 764, 934 |
| TatI | WGTACW | 2 cut(s) | 45, 861 |
| TfiI | GAWTC | 2 cut(s) | 170, 354 |
| Tru1I | TTAA | 6 cut(s) | 93, 431, 509, 576, 608, 624 |
| Tru9I | TTAA | 6 cut(s) | 93, 431, 509, 576, 608, 624 |
| TscAI | CASTG | 3 cut(s) | 103, 600, 834 |
| TseFI | GTSAC | 3 cut(s) | 20, 163, 542 |
| TseI | GCWGC | 1 cut(s) | 867 |
| Tsp45I | GTSAC | 3 cut(s) | 20, 163, 542 |
| TspDTI | ATGAA | 3 cut(s) | 150, 407, 667 |
| TspRI | CASTG | 3 cut(s) | 103, 600, 834 |
| VpaK11BI | GGWCC | 1 cut(s) | 987 |
| XapI | RAATTY | 6 cut(s) | 89, 197, 264, 368, 505, 714 |
| XceI | RCATGY | 2 cut(s) | 28, 158 |
| XmnI | GAANNNNTTC | 1 cut(s) | 318 |