DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 13 - 120 | 6.1e-11 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 101 |
| AccI | GTMKAC | 1 cut(s) | 27 |
| AfaI | GTAC | 2 cut(s) | 5, 77 |
| AgsI | TTSAA | 1 cut(s) | 352 |
| AluBI | AGCT | 3 cut(s) | 133, 138, 242 |
| AluI | AGCT | 3 cut(s) | 133, 138, 242 |
| Alw21I | GWGCWC | 1 cut(s) | 228 |
| ApeKI | GCWGC | 2 cut(s) | 13, 258 |
| AsuHPI | GGTGA | 1 cut(s) | 346 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 67, 100 |
| BbsI | GAAGAC | 1 cut(s) | 241 |
| Bbv12I | GWGCWC | 1 cut(s) | 228 |
| BbvI | GCAGC | 2 cut(s) | 25, 270 |
| BceAI | ACGGC | 1 cut(s) | 82 |
| BciVI | GTATCC | 1 cut(s) | 115 |
| BfmI | CTRYAG | 1 cut(s) | 175 |
| BfuAI | ACCTGC | 1 cut(s) | 101 |
| BfuI | GTATCC | 1 cut(s) | 115 |
| BisI | GCNGC | 2 cut(s) | 14, 259 |
| BlpI | GCTNAGC | 2 cut(s) | 134, 243 |
| BlsI | GCNGC | 2 cut(s) | 15, 260 |
| BmsI | GCATC | 1 cut(s) | 297 |
| BpiI | GAAGAC | 1 cut(s) | 241 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 134, 243 |
| BpuEI | CTTGAG | 2 cut(s) | 83, 92 |
| BsaBI | GATNNNNATC | 1 cut(s) | 126 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 290, 320 |
| Bse3DI | GCAATG | 2 cut(s) | 8, 40 |
| Bse8I | GATNNNNATC | 1 cut(s) | 126 |
| BseGI | GGATG | 1 cut(s) | 288 |
| BseJI | GATNNNNATC | 1 cut(s) | 126 |
| BseMI | GCAATG | 2 cut(s) | 8, 40 |
| BseMII | CTCAG | 1 cut(s) | 234 |
| BseXI | GCAGC | 2 cut(s) | 25, 270 |
| BsiHKAI | GWGCWC | 1 cut(s) | 228 |
| Bsp1286I | GDGCHC | 1 cut(s) | 228 |
| Bsp1407I | TGTACA | 1 cut(s) | 3 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 134, 243 |
| BspCNI | CTCAG | 1 cut(s) | 235 |
| BspMI | ACCTGC | 1 cut(s) | 101 |
| BsrDI | GCAATG | 2 cut(s) | 8, 40 |
| BsrGI | TGTACA | 1 cut(s) | 3 |
| Bst4CI | ACNGT | 1 cut(s) | 220 |
| BstAUI | TGTACA | 1 cut(s) | 3 |
| BstDEI | CTNAG | 2 cut(s) | 134, 243 |
| BstF5I | GGATG | 1 cut(s) | 288 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 93 |
| BstSFI | CTRYAG | 1 cut(s) | 175 |
| BstV1I | GCAGC | 2 cut(s) | 25, 270 |
| BstV2I | GAAGAC | 1 cut(s) | 241 |
| BsuI | GTATCC | 1 cut(s) | 115 |
| BtsCI | GGATG | 1 cut(s) | 288 |
| BveI | ACCTGC | 1 cut(s) | 101 |
| Csp6I | GTAC | 2 cut(s) | 4, 76 |
| CviAII | CATG | 4 cut(s) | 39, 171, 187, 229 |
| CviJI | RGCY | 5 cut(s) | 69, 112, 133, 138, 242 |
| CviKI_1 | RGCY | 5 cut(s) | 69, 112, 133, 138, 242 |
| CviQI | GTAC | 2 cut(s) | 4, 76 |
| DdeI | CTNAG | 2 cut(s) | 134, 243 |
| EcoT22I | ATGCAT | 1 cut(s) | 40 |
| FaeI | CATG | 4 cut(s) | 42, 174, 190, 232 |
| FaiI | YATR | 7 cut(s) | 40, 61, 155, 172, 184, 188, 230 |
| FatI | CATG | 4 cut(s) | 38, 170, 186, 228 |
| FblI | GTMKAC | 1 cut(s) | 27 |
| Fnu4HI | GCNGC | 2 cut(s) | 14, 259 |
| FokI | GGATG | 1 cut(s) | 275 |
| Fsp4HI | GCNGC | 2 cut(s) | 14, 259 |
| GluI | GCNGC | 2 cut(s) | 14, 259 |
| Hin1II | CATG | 4 cut(s) | 42, 174, 190, 232 |
| HincII | GTYRAC | 1 cut(s) | 280 |
| HindII | GTYRAC | 1 cut(s) | 280 |
| HphI | GGTGA | 1 cut(s) | 346 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 28, 280 |
| Hpy188I | TCNGA | 1 cut(s) | 323 |
| Hpy188III | TCNNGA | 2 cut(s) | 149, 269 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 28, 280 |
| HpyCH4III | ACNGT | 1 cut(s) | 220 |
| HpyCH4V | TGCA | 3 cut(s) | 13, 33, 38 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 93 |
| HpyF3I | CTNAG | 2 cut(s) | 134, 243 |
| Hsp92II | CATG | 4 cut(s) | 42, 174, 190, 232 |
| LpnPI | CCDG | 3 cut(s) | 55, 106, 254 |
| Lsp1109I | GCAGC | 2 cut(s) | 25, 270 |
| LweI | GCATC | 1 cut(s) | 297 |
| MaeIII | GTNAC | 1 cut(s) | 146 |
| MboII | GAAGA | 1 cut(s) | 246 |
| MfeI | CAATTG | 1 cut(s) | 329 |
| MhlI | GDGCHC | 1 cut(s) | 228 |
| MluCI | AATT | 2 cut(s) | 317, 329 |
| MmeI | TCCRAC | 1 cut(s) | 316 |
| MnlI | CCTC | 5 cut(s) | 107, 112, 174, 190, 355 |
| Mph1103I | ATGCAT | 1 cut(s) | 40 |
| MunI | CAATTG | 1 cut(s) | 329 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 93 |
| NlaIII | CATG | 4 cut(s) | 42, 174, 190, 232 |
| NmuCI | GTSAC | 1 cut(s) | 146 |
| NsiI | ATGCAT | 1 cut(s) | 40 |
| PflFI | GACNNNGTC | 1 cut(s) | 275 |
| PkrI | GCNGC | 2 cut(s) | 15, 260 |
| PsyI | GACNNNGTC | 1 cut(s) | 275 |
| RsaI | GTAC | 2 cut(s) | 5, 77 |
| RsaNI | GTAC | 2 cut(s) | 4, 76 |
| SatI | GCNGC | 2 cut(s) | 14, 259 |
| SduI | GDGCHC | 1 cut(s) | 228 |
| SetI | ASST | 7 cut(s) | 85, 95, 135, 140, 244, 347, 362 |
| SfaNI | GCATC | 1 cut(s) | 297 |
| SfcI | CTRYAG | 1 cut(s) | 175 |
| SmlI | CTYRAG | 2 cut(s) | 98, 107 |
| SmoI | CTYRAG | 2 cut(s) | 98, 107 |
| Sse9I | AATT | 2 cut(s) | 317, 329 |
| TaaI | ACNGT | 1 cut(s) | 220 |
| TasI | AATT | 2 cut(s) | 317, 329 |
| TatI | WGTACW | 1 cut(s) | 3 |
| TseFI | GTSAC | 1 cut(s) | 146 |
| TseI | GCWGC | 2 cut(s) | 13, 258 |
| Tsp45I | GTSAC | 1 cut(s) | 146 |
| Tth111I | GACNNNGTC | 1 cut(s) | 275 |
| XmiI | GTMKAC | 1 cut(s) | 27 |
| Zsp2I | ATGCAT | 1 cut(s) | 40 |