DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 777 |
| AciI | CCGC | 2 cut(s) | 100, 748 |
| AclWI | GGATC | 4 cut(s) | 80, 221, 428, 779 |
| AcsI | RAATTY | 2 cut(s) | 263, 301 |
| AcuI | CTGAAG | 1 cut(s) | 938 |
| AfaI | GTAC | 2 cut(s) | 455, 520 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 555 |
| AflIII | ACRYGT | 1 cut(s) | 726 |
| AgsI | TTSAA | 6 cut(s) | 9, 122, 270, 536, 704, 872 |
| AjnI | CCWGG | 1 cut(s) | 274 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 696, 728 |
| AluBI | AGCT | 5 cut(s) | 30, 481, 516, 620, 878 |
| AluI | AGCT | 5 cut(s) | 30, 481, 516, 620, 878 |
| Alw21I | GWGCWC | 1 cut(s) | 640 |
| Alw26I | GTCTC | 3 cut(s) | 44, 481, 658 |
| AlwI | GGATC | 4 cut(s) | 80, 221, 428, 779 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 46 |
| Ama87I | CYCGRG | 1 cut(s) | 31 |
| AoxI | GGCC | 1 cut(s) | 114 |
| ApeKI | GCWGC | 1 cut(s) | 413 |
| ApoI | RAATTY | 2 cut(s) | 263, 301 |
| AspS9I | GGNCC | 2 cut(s) | 312, 818 |
| AsuHPI | GGTGA | 1 cut(s) | 767 |
| AvaI | CYCGRG | 1 cut(s) | 31 |
| AvaII | GGWCC | 2 cut(s) | 312, 818 |
| Bbv12I | GWGCWC | 1 cut(s) | 640 |
| BbvCI | CCTCAGC | 1 cut(s) | 904 |
| BbvI | GCAGC | 1 cut(s) | 400 |
| BccI | CCATC | 4 cut(s) | 202, 238, 394, 811 |
| BceAI | ACGGC | 1 cut(s) | 957 |
| BciT130I | CCWGG | 1 cut(s) | 276 |
| BciVI | GTATCC | 1 cut(s) | 681 |
| BclI | TGATCA | 1 cut(s) | 505 |
| BcoDI | GTCTC | 3 cut(s) | 44, 481, 658 |
| BfaI | CTAG | 1 cut(s) | 976 |
| BfmI | CTRYAG | 2 cut(s) | 424, 807 |
| BfuI | GTATCC | 1 cut(s) | 681 |
| BisI | GCNGC | 1 cut(s) | 414 |
| BlpI | GCTNAGC | 1 cut(s) | 621 |
| BlsI | GCNGC | 1 cut(s) | 415 |
| Bme1390I | CCNGG | 1 cut(s) | 276 |
| Bme18I | GGWCC | 2 cut(s) | 312, 818 |
| BmeT110I | CYCGRG | 1 cut(s) | 31 |
| BmgT120I | GGNCC | 2 cut(s) | 312, 818 |
| BmiI | GGNNCC | 1 cut(s) | 314 |
| BmrFI | CCNGG | 1 cut(s) | 276 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 913, 945 |
| BpmI | CTGGAG | 1 cut(s) | 68 |
| Bpu10I | CCTNAGC | 1 cut(s) | 904 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 621 |
| Bsa29I | ATCGAT | 1 cut(s) | 225 |
| BsaAI | YACGTR | 1 cut(s) | 727 |
| BsaI | GGTCTC | 1 cut(s) | 44 |
| BsaJI | CCNNGG | 1 cut(s) | 275 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 555 |
| Bse3DI | GCAATG | 1 cut(s) | 592 |
| BseBI | CCWGG | 1 cut(s) | 276 |
| BseCI | ATCGAT | 1 cut(s) | 225 |
| BseDI | CCNNGG | 1 cut(s) | 275 |
| BseGI | GGATG | 5 cut(s) | 70, 127, 230, 467, 583 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 555 |
| BseMI | GCAATG | 1 cut(s) | 592 |
| BseMII | CTCAG | 3 cut(s) | 254, 612, 918 |
| BseRI | GAGGAG | 1 cut(s) | 786 |
| BseXI | GCAGC | 1 cut(s) | 400 |
| BsgI | GTGCAG | 1 cut(s) | 117 |
| BshFI | GGCC | 1 cut(s) | 116 |
| BshVI | ATCGAT | 1 cut(s) | 225 |
| BsiHKAI | GWGCWC | 1 cut(s) | 640 |
| BsiHKCI | CYCGRG | 1 cut(s) | 31 |
| BslFI | GGGAC | 2 cut(s) | 293, 298 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 555 |
| BsmAI | GTCTC | 3 cut(s) | 44, 481, 658 |
| BsmFI | GGGAC | 2 cut(s) | 293, 298 |
| BsnI | GGCC | 1 cut(s) | 116 |
| Bso31I | GGTCTC | 1 cut(s) | 44 |
| BsoBI | CYCGRG | 1 cut(s) | 31 |
| Bsp1286I | GDGCHC | 1 cut(s) | 640 |
| Bsp143I | GATC | 9 cut(s) | 13, 72, 144, 181, 226, 420, 505, 606, 784 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 621 |
| BspACI | CCGC | 2 cut(s) | 100, 748 |
| BspANI | GGCC | 1 cut(s) | 116 |
| BspCNI | CTCAG | 3 cut(s) | 253, 613, 917 |
| BspDI | ATCGAT | 1 cut(s) | 225 |
| BspLI | GGNNCC | 1 cut(s) | 314 |
| BspPI | GGATC | 4 cut(s) | 80, 221, 428, 779 |
| BspTNI | GGTCTC | 1 cut(s) | 44 |
| BsrDI | GCAATG | 1 cut(s) | 592 |
| BssECI | CCNNGG | 1 cut(s) | 275 |
| BssMI | GATC | 9 cut(s) | 13, 72, 144, 181, 226, 420, 505, 606, 784 |
| Bst2UI | CCWGG | 1 cut(s) | 276 |
| Bst4CI | ACNGT | 3 cut(s) | 503, 598, 669 |
| Bst6I | CTCTTC | 3 cut(s) | 549, 855, 914 |
| BstBAI | YACGTR | 1 cut(s) | 727 |
| BstDEI | CTNAG | 4 cut(s) | 240, 621, 660, 904 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 553 |
| BstF5I | GGATG | 5 cut(s) | 70, 127, 230, 467, 583 |
| BstKTI | GATC | 9 cut(s) | 16, 75, 147, 184, 229, 423, 508, 609, 787 |
| BstMAI | GTCTC | 3 cut(s) | 44, 481, 658 |
| BstMBI | GATC | 9 cut(s) | 13, 72, 144, 181, 226, 420, 505, 606, 784 |
| BstNI | CCWGG | 1 cut(s) | 276 |
| BstNSI | RCATGY | 1 cut(s) | 896 |
| BstSCI | CCNGG | 1 cut(s) | 274 |
| BstSFI | CTRYAG | 2 cut(s) | 424, 807 |
| BstV1I | GCAGC | 1 cut(s) | 400 |
| BstX2I | RGATCY | 2 cut(s) | 420, 784 |
| BstYI | RGATCY | 2 cut(s) | 420, 784 |
| Bsu15I | ATCGAT | 1 cut(s) | 225 |
| BsuI | GTATCC | 1 cut(s) | 681 |
| BsuRI | GGCC | 1 cut(s) | 116 |
| BsuTUI | ATCGAT | 1 cut(s) | 225 |
| BtsCI | GGATG | 5 cut(s) | 70, 127, 230, 467, 583 |
| BtsI | GCAGTG | 3 cut(s) | 686, 797, 887 |
| BtsIMutI | CAGTG | 5 cut(s) | 371, 508, 686, 797, 887 |
| CaiI | CAGNNNCTG | 1 cut(s) | 46 |
| Cfr13I | GGNCC | 2 cut(s) | 312, 818 |
| ClaI | ATCGAT | 1 cut(s) | 225 |
| Csp6I | GTAC | 2 cut(s) | 454, 519 |
| CviAII | CATG | 3 cut(s) | 527, 565, 893 |
| CviJI | RGCY | 9 cut(s) | 30, 116, 481, 516, 559, 620, 878, 916, 929 |
| CviKI_1 | RGCY | 9 cut(s) | 30, 116, 481, 516, 559, 620, 878, 916, 929 |
| CviQI | GTAC | 2 cut(s) | 454, 519 |
| DdeI | CTNAG | 4 cut(s) | 240, 621, 660, 904 |
| DpnI | GATC | 9 cut(s) | 15, 74, 146, 183, 228, 422, 507, 608, 786 |
| DpnII | GATC | 9 cut(s) | 13, 72, 144, 181, 226, 420, 505, 606, 784 |
| DraI | TTTAAA | 1 cut(s) | 162 |
| Eam1104I | CTCTTC | 3 cut(s) | 549, 855, 914 |
| EarI | CTCTTC | 3 cut(s) | 549, 855, 914 |
| Eco31I | GGTCTC | 1 cut(s) | 44 |
| Eco47I | GGWCC | 2 cut(s) | 312, 818 |
| Eco57I | CTGAAG | 1 cut(s) | 938 |
| Eco88I | CYCGRG | 1 cut(s) | 31 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 553 |
| EcoO109I | RGGNCCY | 1 cut(s) | 312 |
| EcoRII | CCWGG | 1 cut(s) | 274 |
| FaeI | CATG | 3 cut(s) | 530, 568, 896 |
| FaqI | GGGAC | 2 cut(s) | 293, 298 |
| FatI | CATG | 3 cut(s) | 526, 564, 892 |
| FbaI | TGATCA | 1 cut(s) | 505 |
| FblI | GTMKAC | 1 cut(s) | 777 |
| Fnu4HI | GCNGC | 1 cut(s) | 414 |
| FokI | GGATG | 5 cut(s) | 77, 114, 217, 474, 590 |
| Fsp4HI | GCNGC | 1 cut(s) | 414 |
| FspBI | CTAG | 1 cut(s) | 976 |
| GluI | GCNGC | 1 cut(s) | 414 |
| GsuI | CTGGAG | 1 cut(s) | 68 |
| HaeIII | GGCC | 1 cut(s) | 116 |
| Hin1II | CATG | 3 cut(s) | 530, 568, 896 |
| HinfI | GANTC | 7 cut(s) | 34, 43, 338, 376, 429, 774, 794 |
| HphI | GGTGA | 1 cut(s) | 767 |
| Hpy166II | GTNNAC | 2 cut(s) | 758, 778 |
| Hpy188I | TCNGA | 6 cut(s) | 186, 243, 366, 611, 770, 939 |
| Hpy188III | TCNNGA | 4 cut(s) | 47, 433, 647, 674 |
| Hpy8I | GTNNAC | 2 cut(s) | 758, 778 |
| HpyAV | CCTTC | 3 cut(s) | 283, 477, 858 |
| HpyCH4III | ACNGT | 3 cut(s) | 503, 598, 669 |
| HpyCH4IV | ACGT | 1 cut(s) | 726 |
| HpyCH4V | TGCA | 3 cut(s) | 95, 134, 892 |
| HpyF3I | CTNAG | 4 cut(s) | 240, 621, 660, 904 |
| HpySE526I | ACGT | 1 cut(s) | 726 |
| Hsp92II | CATG | 3 cut(s) | 530, 568, 896 |
| Ksp22I | TGATCA | 1 cut(s) | 505 |
| Kzo9I | GATC | 9 cut(s) | 13, 72, 144, 181, 226, 420, 505, 606, 784 |
| LmnI | GCTCC | 2 cut(s) | 523, 643 |
| Lsp1109I | GCAGC | 1 cut(s) | 400 |
| MaeI | CTAG | 1 cut(s) | 976 |
| MaeII | ACGT | 1 cut(s) | 726 |
| MaeIII | GTNAC | 1 cut(s) | 655 |
| MalI | GATC | 9 cut(s) | 15, 74, 146, 183, 228, 422, 507, 608, 786 |
| MboI | GATC | 9 cut(s) | 13, 72, 144, 181, 226, 420, 505, 606, 784 |
| MboII | GAAGA | 7 cut(s) | 260, 338, 536, 692, 707, 872, 931 |
| MfeI | CAATTG | 2 cut(s) | 445, 570 |
| MflI | RGATCY | 2 cut(s) | 420, 784 |
| MhlI | GDGCHC | 1 cut(s) | 640 |
| MluCI | AATT | 6 cut(s) | 263, 294, 301, 445, 570, 699 |
| MlyI | GAGTC | 4 cut(s) | 37, 43, 332, 783 |
| MseI | TTAA | 1 cut(s) | 161 |
| MspA1I | CMGCKG | 2 cut(s) | 516, 878 |
| MspR9I | CCNGG | 1 cut(s) | 276 |
| MunI | CAATTG | 2 cut(s) | 445, 570 |
| MvaI | CCWGG | 1 cut(s) | 276 |
| NdeII | GATC | 9 cut(s) | 13, 72, 144, 181, 226, 420, 505, 606, 784 |
| NlaIII | CATG | 3 cut(s) | 530, 568, 896 |
| NlaIV | GGNNCC | 1 cut(s) | 314 |
| NspI | RCATGY | 1 cut(s) | 896 |
| PaeR7I | CTCGAG | 1 cut(s) | 31 |
| PfeI | GAWTC | 3 cut(s) | 376, 429, 794 |
| PkrI | GCNGC | 1 cut(s) | 415 |
| PleI | GAGTC | 4 cut(s) | 37, 42, 332, 782 |
| PpsI | GAGTC | 4 cut(s) | 37, 42, 332, 782 |
| Ppu21I | YACGTR | 1 cut(s) | 727 |
| PpuMI | RGGWCCY | 1 cut(s) | 312 |
| Psp5II | RGGWCCY | 1 cut(s) | 312 |
| Psp6I | CCWGG | 1 cut(s) | 274 |
| PspGI | CCWGG | 1 cut(s) | 274 |
| PspN4I | GGNNCC | 1 cut(s) | 314 |
| PspPI | GGNCC | 2 cut(s) | 312, 818 |
| PspPPI | RGGWCCY | 1 cut(s) | 312 |
| PspXI | VCTCGAGB | 1 cut(s) | 31 |
| PstNI | CAGNNNCTG | 1 cut(s) | 46 |
| PsuI | RGATCY | 2 cut(s) | 420, 784 |
| PvuII | CAGCTG | 2 cut(s) | 516, 878 |
| RsaI | GTAC | 2 cut(s) | 455, 520 |
| RsaNI | GTAC | 2 cut(s) | 454, 519 |
| SaqAI | TTAA | 1 cut(s) | 161 |
| SatI | GCNGC | 1 cut(s) | 414 |
| Sau3AI | GATC | 9 cut(s) | 13, 72, 144, 181, 226, 420, 505, 606, 784 |
| Sau96I | GGNCC | 2 cut(s) | 312, 818 |
| SchI | GAGTC | 4 cut(s) | 37, 43, 332, 783 |
| ScrFI | CCNGG | 1 cut(s) | 276 |
| SduI | GDGCHC | 1 cut(s) | 640 |
| SfcI | CTRYAG | 2 cut(s) | 424, 807 |
| Sfr274I | CTCGAG | 1 cut(s) | 31 |
| SinI | GGWCC | 2 cut(s) | 312, 818 |
| SlaI | CTCGAG | 1 cut(s) | 31 |
| SmlI | CTYRAG | 1 cut(s) | 31 |
| SmoI | CTYRAG | 1 cut(s) | 31 |
| Sse9I | AATT | 6 cut(s) | 263, 294, 301, 445, 570, 699 |
| SsiI | CCGC | 2 cut(s) | 100, 748 |
| SspMI | CTAG | 1 cut(s) | 976 |
| StyD4I | CCNGG | 1 cut(s) | 274 |
| TaaI | ACNGT | 3 cut(s) | 503, 598, 669 |
| TaiI | ACGT | 1 cut(s) | 729 |
| TaqI | TCGA | 3 cut(s) | 32, 225, 434 |
| TasI | AATT | 6 cut(s) | 263, 294, 301, 445, 570, 699 |
| TfiI | GAWTC | 3 cut(s) | 376, 429, 794 |
| Tru1I | TTAA | 1 cut(s) | 161 |
| Tru9I | TTAA | 1 cut(s) | 161 |
| TscAI | CASTG | 5 cut(s) | 378, 508, 693, 804, 894 |
| TseI | GCWGC | 1 cut(s) | 413 |
| TspDTI | ATGAA | 6 cut(s) | 39, 208, 272, 294, 603, 693 |
| TspGWI | ACGGA | 1 cut(s) | 536 |
| TspRI | CASTG | 5 cut(s) | 378, 508, 693, 804, 894 |
| VpaK11BI | GGWCC | 2 cut(s) | 312, 818 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 553 |
| XapI | RAATTY | 2 cut(s) | 263, 301 |
| XceI | RCATGY | 1 cut(s) | 896 |
| XhoI | CTCGAG | 1 cut(s) | 31 |
| XmiI | GTMKAC | 1 cut(s) | 777 |
| XspI | CTAG | 1 cut(s) | 976 |