DNA recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 98 |
| AclI | AACGTT | 1 cut(s) | 162 |
| AclWI | GGATC | 2 cut(s) | 339, 536 |
| AcsI | RAATTY | 1 cut(s) | 450 |
| AdeI | CACNNNGTG | 1 cut(s) | 500 |
| AfaI | GTAC | 1 cut(s) | 14 |
| AgeI | ACCGGT | 1 cut(s) | 122 |
| AgsI | TTSAA | 2 cut(s) | 208, 443 |
| AluBI | AGCT | 3 cut(s) | 58, 491, 560 |
| AluI | AGCT | 3 cut(s) | 58, 491, 560 |
| Alw26I | GTCTC | 3 cut(s) | 144, 350, 435 |
| AlwI | GGATC | 2 cut(s) | 339, 536 |
| ApoI | RAATTY | 1 cut(s) | 450 |
| AsiGI | ACCGGT | 1 cut(s) | 122 |
| AsuC2I | CCSGG | 1 cut(s) | 221 |
| AsuHPI | GGTGA | 4 cut(s) | 112, 268, 341, 437 |
| AxyI | CCTNAGG | 1 cut(s) | 402 |
| BclI | TGATCA | 1 cut(s) | 73 |
| BcnI | CCSGG | 1 cut(s) | 221 |
| BcoDI | GTCTC | 3 cut(s) | 144, 350, 435 |
| BfaI | CTAG | 1 cut(s) | 326 |
| BglII | AGATCT | 1 cut(s) | 394 |
| BisI | GCNGC | 1 cut(s) | 98 |
| BlsI | GCNGC | 1 cut(s) | 99 |
| Bme1390I | CCNGG | 1 cut(s) | 221 |
| BmrFI | CCNGG | 1 cut(s) | 221 |
| BpuMI | CCSGG | 1 cut(s) | 221 |
| BsaBI | GATNNNNATC | 1 cut(s) | 540 |
| BsaI | GGTCTC | 1 cut(s) | 350 |
| BsaJI | CCNNGG | 1 cut(s) | 257 |
| BsaWI | WCCGGW | 1 cut(s) | 122 |
| Bse118I | RCCGGY | 1 cut(s) | 122 |
| Bse1I | ACTGG | 1 cut(s) | 104 |
| Bse21I | CCTNAGG | 1 cut(s) | 402 |
| Bse8I | GATNNNNATC | 1 cut(s) | 540 |
| BseDI | CCNNGG | 1 cut(s) | 257 |
| BseJI | GATNNNNATC | 1 cut(s) | 540 |
| BseMII | CTCAG | 1 cut(s) | 393 |
| BseNI | ACTGG | 1 cut(s) | 104 |
| BseRI | GAGGAG | 2 cut(s) | 419, 606 |
| BseYI | CCCAGC | 1 cut(s) | 487 |
| BsgI | GTGCAG | 1 cut(s) | 522 |
| BshTI | ACCGGT | 1 cut(s) | 122 |
| BsiSI | CCGG | 2 cut(s) | 123, 221 |
| BsmAI | GTCTC | 3 cut(s) | 144, 350, 435 |
| Bso31I | GGTCTC | 1 cut(s) | 350 |
| Bsp143I | GATC | 5 cut(s) | 73, 344, 394, 468, 541 |
| Bsp19I | CCATGG | 1 cut(s) | 257 |
| BspACI | CCGC | 1 cut(s) | 98 |
| BspCNI | CTCAG | 1 cut(s) | 394 |
| BspPI | GGATC | 2 cut(s) | 339, 536 |
| BspTNI | GGTCTC | 1 cut(s) | 350 |
| BsrFI | RCCGGY | 1 cut(s) | 122 |
| BsrI | ACTGG | 1 cut(s) | 104 |
| BssAI | RCCGGY | 1 cut(s) | 122 |
| BssECI | CCNNGG | 1 cut(s) | 257 |
| BssMI | GATC | 5 cut(s) | 73, 344, 394, 468, 541 |
| BssT1I | CCWWGG | 1 cut(s) | 257 |
| Bst4CI | ACNGT | 1 cut(s) | 580 |
| Bst6I | CTCTTC | 1 cut(s) | 581 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 241 |
| BstC8I | GCNNGC | 2 cut(s) | 60, 237 |
| BstDEI | CTNAG | 3 cut(s) | 402, 556, 625 |
| BstDSI | CCRYGG | 1 cut(s) | 257 |
| BstKTI | GATC | 5 cut(s) | 76, 347, 397, 471, 544 |
| BstMAI | GTCTC | 3 cut(s) | 144, 350, 435 |
| BstMBI | GATC | 5 cut(s) | 73, 344, 394, 468, 541 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 241, 566 |
| BstNSI | RCATGY | 1 cut(s) | 239 |
| BstSCI | CCNGG | 1 cut(s) | 219 |
| BstX2I | RGATCY | 2 cut(s) | 344, 394 |
| BstYI | RGATCY | 2 cut(s) | 344, 394 |
| Bsu36I | CCTNAGG | 1 cut(s) | 402 |
| BtgI | CCRYGG | 1 cut(s) | 257 |
| BtsI | GCAGTG | 1 cut(s) | 246 |
| BtsIMutI | CAGTG | 2 cut(s) | 111, 246 |
| Cac8I | GCNNGC | 2 cut(s) | 60, 237 |
| Cfr10I | RCCGGY | 1 cut(s) | 122 |
| Csp6I | GTAC | 1 cut(s) | 13 |
| CspAI | ACCGGT | 1 cut(s) | 122 |
| CviAII | CATG | 2 cut(s) | 236, 258 |
| CviJI | RGCY | 6 cut(s) | 58, 157, 457, 491, 560, 613 |
| CviKI_1 | RGCY | 6 cut(s) | 58, 157, 457, 491, 560, 613 |
| CviQI | GTAC | 1 cut(s) | 13 |
| DdeI | CTNAG | 3 cut(s) | 402, 556, 625 |
| DpnI | GATC | 5 cut(s) | 75, 346, 396, 470, 543 |
| DpnII | GATC | 5 cut(s) | 73, 344, 394, 468, 541 |
| DraIII | CACNNNGTG | 1 cut(s) | 500 |
| Eam1104I | CTCTTC | 1 cut(s) | 581 |
| EarI | CTCTTC | 1 cut(s) | 581 |
| Eco130I | CCWWGG | 1 cut(s) | 257 |
| Eco31I | GGTCTC | 1 cut(s) | 350 |
| Eco81I | CCTNAGG | 1 cut(s) | 402 |
| EcoRI | GAATTC | 1 cut(s) | 450 |
| EcoT14I | CCWWGG | 1 cut(s) | 257 |
| ErhI | CCWWGG | 1 cut(s) | 257 |
| FaeI | CATG | 2 cut(s) | 239, 261 |
| FatI | CATG | 2 cut(s) | 235, 257 |
| FbaI | TGATCA | 1 cut(s) | 73 |
| Fnu4HI | GCNGC | 1 cut(s) | 98 |
| Fsp4HI | GCNGC | 1 cut(s) | 98 |
| FspBI | CTAG | 1 cut(s) | 326 |
| GluI | GCNGC | 1 cut(s) | 98 |
| GsaI | CCCAGC | 1 cut(s) | 491 |
| HapII | CCGG | 2 cut(s) | 123, 221 |
| Hin1II | CATG | 2 cut(s) | 239, 261 |
| HinfI | GANTC | 6 cut(s) | 224, 287, 304, 428, 460, 506 |
| HpaII | CCGG | 2 cut(s) | 123, 221 |
| HphI | GGTGA | 4 cut(s) | 112, 268, 341, 437 |
| Hpy166II | GTNNAC | 1 cut(s) | 37 |
| Hpy188I | TCNGA | 6 cut(s) | 10, 78, 202, 292, 511, 628 |
| Hpy188III | TCNNGA | 1 cut(s) | 545 |
| Hpy8I | GTNNAC | 1 cut(s) | 37 |
| HpyAV | CCTTC | 1 cut(s) | 346 |
| HpyCH4III | ACNGT | 1 cut(s) | 580 |
| HpyCH4IV | ACGT | 1 cut(s) | 162 |
| HpyCH4V | TGCA | 4 cut(s) | 62, 239, 244, 503 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 241, 566 |
| HpyF3I | CTNAG | 3 cut(s) | 402, 556, 625 |
| HpySE526I | ACGT | 1 cut(s) | 162 |
| Hsp92II | CATG | 2 cut(s) | 239, 261 |
| Ksp22I | TGATCA | 1 cut(s) | 73 |
| Kzo9I | GATC | 5 cut(s) | 73, 344, 394, 468, 541 |
| LmnI | GCTCC | 2 cut(s) | 496, 593 |
| MaeI | CTAG | 1 cut(s) | 326 |
| MaeII | ACGT | 1 cut(s) | 162 |
| MaeIII | GTNAC | 1 cut(s) | 298 |
| MalI | GATC | 5 cut(s) | 75, 346, 396, 470, 543 |
| MboI | GATC | 5 cut(s) | 73, 344, 394, 468, 541 |
| MboII | GAAGA | 3 cut(s) | 305, 404, 598 |
| MfeI | CAATTG | 1 cut(s) | 603 |
| MflI | RGATCY | 2 cut(s) | 344, 394 |
| MluCI | AATT | 5 cut(s) | 195, 311, 420, 450, 603 |
| MlyI | GAGTC | 4 cut(s) | 218, 281, 298, 437 |
| MnlI | CCTC | 2 cut(s) | 397, 584 |
| MseI | TTAA | 2 cut(s) | 165, 309 |
| MslI | CAYNNNNRTG | 1 cut(s) | 234 |
| MspI | CCGG | 2 cut(s) | 123, 221 |
| MspR9I | CCNGG | 1 cut(s) | 221 |
| MunI | CAATTG | 1 cut(s) | 603 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 241, 566 |
| NciI | CCSGG | 1 cut(s) | 221 |
| NcoI | CCATGG | 1 cut(s) | 257 |
| NdeII | GATC | 5 cut(s) | 73, 344, 394, 468, 541 |
| NlaIII | CATG | 2 cut(s) | 239, 261 |
| NmuCI | GTSAC | 1 cut(s) | 298 |
| NspI | RCATGY | 1 cut(s) | 239 |
| PaeI | GCATGC | 1 cut(s) | 239 |
| PfeI | GAWTC | 2 cut(s) | 460, 506 |
| PinAI | ACCGGT | 1 cut(s) | 122 |
| PkrI | GCNGC | 1 cut(s) | 99 |
| PleI | GAGTC | 4 cut(s) | 218, 281, 298, 436 |
| PpsI | GAGTC | 4 cut(s) | 218, 281, 298, 436 |
| Psp1406I | AACGTT | 1 cut(s) | 162 |
| PspFI | CCCAGC | 1 cut(s) | 487 |
| PsuI | RGATCY | 2 cut(s) | 344, 394 |
| RsaI | GTAC | 1 cut(s) | 14 |
| RsaNI | GTAC | 1 cut(s) | 13 |
| RseI | CAYNNNNRTG | 1 cut(s) | 234 |
| SaqAI | TTAA | 2 cut(s) | 165, 309 |
| SatI | GCNGC | 1 cut(s) | 98 |
| Sau3AI | GATC | 5 cut(s) | 73, 344, 394, 468, 541 |
| SchI | GAGTC | 4 cut(s) | 218, 281, 298, 437 |
| ScrFI | CCNGG | 1 cut(s) | 221 |
| SetI | ASST | 9 cut(s) | 34, 60, 165, 253, 331, 338, 353, 493, 562 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 234 |
| SphI | GCATGC | 1 cut(s) | 239 |
| Sse9I | AATT | 5 cut(s) | 195, 311, 420, 450, 603 |
| SsiI | CCGC | 1 cut(s) | 98 |
| SspI | AATATT | 1 cut(s) | 481 |
| SspMI | CTAG | 1 cut(s) | 326 |
| StyD4I | CCNGG | 1 cut(s) | 219 |
| StyI | CCWWGG | 1 cut(s) | 257 |
| TaaI | ACNGT | 1 cut(s) | 580 |
| TaiI | ACGT | 1 cut(s) | 165 |
| TaqI | TCGA | 1 cut(s) | 265 |
| TasI | AATT | 5 cut(s) | 195, 311, 420, 450, 603 |
| TatI | WGTACW | 1 cut(s) | 12 |
| TauI | GCSGC | 1 cut(s) | 100 |
| TfiI | GAWTC | 2 cut(s) | 460, 506 |
| Tru1I | TTAA | 2 cut(s) | 165, 309 |
| Tru9I | TTAA | 2 cut(s) | 165, 309 |
| TscAI | CASTG | 2 cut(s) | 111, 246 |
| TseFI | GTSAC | 1 cut(s) | 298 |
| Tsp45I | GTSAC | 1 cut(s) | 298 |
| TspDTI | ATGAA | 2 cut(s) | 17, 610 |
| TspRI | CASTG | 2 cut(s) | 111, 246 |
| XapI | RAATTY | 1 cut(s) | 450 |
| XceI | RCATGY | 1 cut(s) | 239 |
| XspI | CTAG | 1 cut(s) | 326 |