DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| REPA_OB_2 | PF16900 | 100 - 172 | 2.2e-06 | Replication protein A OB domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 90 |
| AclI | AACGTT | 1 cut(s) | 15 |
| AclWI | GGATC | 1 cut(s) | 587 |
| AfaI | GTAC | 2 cut(s) | 312, 379 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 90 |
| AgsI | TTSAA | 4 cut(s) | 8, 20, 64, 182 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 430, 462 |
| AluBI | AGCT | 1 cut(s) | 626 |
| AluI | AGCT | 1 cut(s) | 626 |
| Alw21I | GWGCWC | 1 cut(s) | 510 |
| AlwI | GGATC | 1 cut(s) | 587 |
| AoxI | GGCC | 3 cut(s) | 54, 95, 127 |
| ApeKI | GCWGC | 3 cut(s) | 330, 458, 608 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 374, 406 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 15 |
| AsuHPI | GGTGA | 1 cut(s) | 433 |
| BbsI | GAAGAC | 2 cut(s) | 52, 397 |
| Bbv12I | GWGCWC | 1 cut(s) | 510 |
| BbvI | GCAGC | 3 cut(s) | 317, 445, 620 |
| BccI | CCATC | 2 cut(s) | 119, 368 |
| BceAI | ACGGC | 2 cut(s) | 41, 278 |
| BciVI | GTATCC | 1 cut(s) | 91 |
| BclI | TGATCA | 2 cut(s) | 289, 585 |
| BfaI | CTAG | 1 cut(s) | 462 |
| BfuI | GTATCC | 1 cut(s) | 91 |
| BisI | GCNGC | 3 cut(s) | 331, 459, 609 |
| BlsI | GCNGC | 3 cut(s) | 332, 460, 610 |
| BmcAI | AGTACT | 1 cut(s) | 312 |
| BmsI | GCATC | 2 cut(s) | 151, 364 |
| BpiI | GAAGAC | 2 cut(s) | 52, 397 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 481, 513 |
| BpmI | CTGGAG | 2 cut(s) | 407, 566 |
| BpuEI | CTTGAG | 1 cut(s) | 439 |
| Bsa29I | ATCGAT | 2 cut(s) | 341, 591 |
| BsaJI | CCNNGG | 1 cut(s) | 260 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 90 |
| Bse1I | ACTGG | 2 cut(s) | 390, 503 |
| BseCI | ATCGAT | 2 cut(s) | 341, 591 |
| BseDI | CCNNGG | 1 cut(s) | 260 |
| BseGI | GGATG | 1 cut(s) | 379 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 90 |
| BseMII | CTCAG | 1 cut(s) | 618 |
| BseNI | ACTGG | 2 cut(s) | 390, 503 |
| BseRI | GAGGAG | 2 cut(s) | 167, 436 |
| BseXI | GCAGC | 3 cut(s) | 317, 445, 620 |
| BshFI | GGCC | 3 cut(s) | 56, 97, 129 |
| BshVI | ATCGAT | 2 cut(s) | 341, 591 |
| BsiHKAI | GWGCWC | 1 cut(s) | 510 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 90 |
| BsnI | GGCC | 3 cut(s) | 56, 97, 129 |
| Bsp1286I | GDGCHC | 1 cut(s) | 510 |
| Bsp143I | GATC | 3 cut(s) | 289, 585, 592 |
| BspANI | GGCC | 3 cut(s) | 56, 97, 129 |
| BspCNI | CTCAG | 1 cut(s) | 619 |
| BspDI | ATCGAT | 2 cut(s) | 341, 591 |
| BspPI | GGATC | 1 cut(s) | 587 |
| BsrI | ACTGG | 2 cut(s) | 390, 503 |
| BssECI | CCNNGG | 1 cut(s) | 260 |
| BssMI | GATC | 3 cut(s) | 289, 585, 592 |
| Bst4CI | ACNGT | 1 cut(s) | 468 |
| Bst6I | CTCTTC | 1 cut(s) | 482 |
| BstC8I | GCNNGC | 1 cut(s) | 510 |
| BstDEI | CTNAG | 1 cut(s) | 627 |
| BstDSI | CCRYGG | 1 cut(s) | 260 |
| BstF5I | GGATG | 1 cut(s) | 379 |
| BstKTI | GATC | 3 cut(s) | 292, 588, 595 |
| BstMBI | GATC | 3 cut(s) | 289, 585, 592 |
| BstV1I | GCAGC | 3 cut(s) | 317, 445, 620 |
| BstV2I | GAAGAC | 2 cut(s) | 52, 397 |
| Bsu15I | ATCGAT | 2 cut(s) | 341, 591 |
| BsuI | GTATCC | 1 cut(s) | 91 |
| BsuRI | GGCC | 3 cut(s) | 56, 97, 129 |
| BsuTUI | ATCGAT | 2 cut(s) | 341, 591 |
| BtgI | CCRYGG | 1 cut(s) | 260 |
| BtsCI | GGATG | 1 cut(s) | 379 |
| BtsIMutI | CAGTG | 1 cut(s) | 510 |
| Cac8I | GCNNGC | 1 cut(s) | 510 |
| ClaI | ATCGAT | 2 cut(s) | 341, 591 |
| Csp6I | GTAC | 2 cut(s) | 311, 378 |
| CviAII | CATG | 2 cut(s) | 409, 455 |
| CviJI | RGCY | 6 cut(s) | 56, 97, 129, 265, 330, 626 |
| CviKI_1 | RGCY | 6 cut(s) | 56, 97, 129, 265, 330, 626 |
| CviQI | GTAC | 2 cut(s) | 311, 378 |
| DdeI | CTNAG | 1 cut(s) | 627 |
| DpnI | GATC | 3 cut(s) | 291, 587, 594 |
| DpnII | GATC | 3 cut(s) | 289, 585, 592 |
| DraI | TTTAAA | 1 cut(s) | 109 |
| Eam1104I | CTCTTC | 1 cut(s) | 482 |
| EarI | CTCTTC | 1 cut(s) | 482 |
| FaeI | CATG | 2 cut(s) | 412, 458 |
| FatI | CATG | 2 cut(s) | 408, 454 |
| FbaI | TGATCA | 2 cut(s) | 289, 585 |
| Fnu4HI | GCNGC | 3 cut(s) | 331, 459, 609 |
| FokI | GGATG | 1 cut(s) | 386 |
| Fsp4HI | GCNGC | 3 cut(s) | 331, 459, 609 |
| FspBI | CTAG | 1 cut(s) | 462 |
| GluI | GCNGC | 3 cut(s) | 331, 459, 609 |
| GsuI | CTGGAG | 2 cut(s) | 407, 566 |
| HaeIII | GGCC | 3 cut(s) | 56, 97, 129 |
| Hin1II | CATG | 2 cut(s) | 412, 458 |
| HinfI | GANTC | 5 cut(s) | 185, 343, 389, 438, 552 |
| HphI | GGTGA | 1 cut(s) | 433 |
| Hpy188I | TCNGA | 1 cut(s) | 190 |
| Hpy188III | TCNNGA | 3 cut(s) | 35, 84, 545 |
| HpyAV | CCTTC | 3 cut(s) | 140, 212, 364 |
| HpyCH4III | ACNGT | 1 cut(s) | 468 |
| HpyCH4IV | ACGT | 2 cut(s) | 15, 201 |
| HpyCH4V | TGCA | 3 cut(s) | 164, 207, 333 |
| HpyF3I | CTNAG | 1 cut(s) | 627 |
| HpySE526I | ACGT | 2 cut(s) | 15, 201 |
| Hsp92II | CATG | 2 cut(s) | 412, 458 |
| Ksp22I | TGATCA | 2 cut(s) | 289, 585 |
| Kzo9I | GATC | 3 cut(s) | 289, 585, 592 |
| LmnI | GCTCC | 1 cut(s) | 547 |
| LpnPI | CCDG | 8 cut(s) | 38, 97, 251, 363, 371, 516, 530, 596 |
| Lsp1109I | GCAGC | 3 cut(s) | 317, 445, 620 |
| LweI | GCATC | 2 cut(s) | 151, 364 |
| MaeI | CTAG | 1 cut(s) | 462 |
| MaeII | ACGT | 2 cut(s) | 15, 201 |
| MaeIII | GTNAC | 1 cut(s) | 553 |
| MalI | GATC | 3 cut(s) | 291, 587, 594 |
| MboI | GATC | 3 cut(s) | 289, 585, 592 |
| MboII | GAAGA | 5 cut(s) | 20, 52, 194, 397, 499 |
| MhlI | GDGCHC | 1 cut(s) | 510 |
| MluCI | AATT | 4 cut(s) | 144, 165, 177, 601 |
| MlyI | GAGTC | 2 cut(s) | 398, 561 |
| MnlI | CCTC | 7 cut(s) | 63, 87, 145, 148, 394, 414, 421 |
| MroXI | GAANNNNTTC | 1 cut(s) | 15 |
| MseI | TTAA | 5 cut(s) | 108, 143, 363, 434, 527 |
| NdeII | GATC | 3 cut(s) | 289, 585, 592 |
| NlaIII | CATG | 2 cut(s) | 412, 458 |
| NmuCI | GTSAC | 1 cut(s) | 553 |
| PdmI | GAANNNNTTC | 1 cut(s) | 15 |
| PfeI | GAWTC | 3 cut(s) | 185, 343, 438 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 90 |
| PkrI | GCNGC | 3 cut(s) | 332, 460, 610 |
| PleI | GAGTC | 2 cut(s) | 397, 560 |
| PpsI | GAGTC | 2 cut(s) | 397, 560 |
| Psp1406I | AACGTT | 1 cut(s) | 15 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 294, 326 |
| RsaI | GTAC | 2 cut(s) | 312, 379 |
| RsaNI | GTAC | 2 cut(s) | 311, 378 |
| SaqAI | TTAA | 5 cut(s) | 108, 143, 363, 434, 527 |
| SatI | GCNGC | 3 cut(s) | 331, 459, 609 |
| Sau3AI | GATC | 3 cut(s) | 289, 585, 592 |
| ScaI | AGTACT | 1 cut(s) | 312 |
| SchI | GAGTC | 2 cut(s) | 398, 561 |
| SduI | GDGCHC | 1 cut(s) | 510 |
| SetI | ASST | 6 cut(s) | 18, 25, 204, 405, 446, 628 |
| SfaNI | GCATC | 2 cut(s) | 151, 364 |
| SmlI | CTYRAG | 1 cut(s) | 418 |
| SmoI | CTYRAG | 1 cut(s) | 418 |
| Sse9I | AATT | 4 cut(s) | 144, 165, 177, 601 |
| SspMI | CTAG | 1 cut(s) | 462 |
| TaaI | ACNGT | 1 cut(s) | 468 |
| TaiI | ACGT | 2 cut(s) | 18, 204 |
| TaqI | TCGA | 3 cut(s) | 272, 341, 591 |
| TasI | AATT | 4 cut(s) | 144, 165, 177, 601 |
| TatI | WGTACW | 1 cut(s) | 310 |
| TfiI | GAWTC | 3 cut(s) | 185, 343, 438 |
| Tru1I | TTAA | 5 cut(s) | 108, 143, 363, 434, 527 |
| Tru9I | TTAA | 5 cut(s) | 108, 143, 363, 434, 527 |
| TscAI | CASTG | 1 cut(s) | 510 |
| TseFI | GTSAC | 1 cut(s) | 553 |
| TseI | GCWGC | 3 cut(s) | 330, 458, 608 |
| Tsp45I | GTSAC | 1 cut(s) | 553 |
| TspDTI | ATGAA | 2 cut(s) | 397, 630 |
| TspRI | CASTG | 1 cut(s) | 510 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 90 |
| XmnI | GAANNNNTTC | 1 cut(s) | 15 |
| XspI | CTAG | 1 cut(s) | 462 |
| ZrmI | AGTACT | 1 cut(s) | 312 |