Rorug07G0189400

DNA recombination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000050
Physical Location & Seq
Reverse (-)
15989252 .. 15991358
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0189400.1

Sequence Viewer

Length: 1311 bp
ATGTCACAGCTGAAGCCAATTTCACACCTTGATGACATACCCTCCACGCCCGGCAAGTTCAAGCTCGAGAAATCCCAGCCCTACATTCACCGCCTCAGGTTCCACGCGTCGCTCTCCAAGCTCACCCTCTGGTCCTCCTTCTTCCTCGTCTTCATTCTCTTCTACTACGTCCTCTCCTCGCCGTCGCCGTCTCTCCCCTCCCGGCGGTCCCTCAACGACTCCTGGGGCGGCCCCGATTGGGAGAAACGGGTCACCCGCTCCGCCAAGACCTCGGCCCATGGGCTCACCGTCCTCGTCACCGGCGCCGCCGGCTTCGTCGGGACCCACGTCTCCATGGCCCTGAAGCGCCGCGGCGACGGCGTCTTGGGAATCGATAACTTCAACCACTACTACGACCCTCGCCTGAAGCGCGATCGCCAGAAGCTTCTGGAAAGGAACGGCGTCTTCGTCGTGGAAGGGGACATAAACGACGCGTCGTTGCTGAGGAAGCTGTTCGACGTCGTGCCGTTTACTCACGTAATGCACCTGGCGGCTCAGGCCGGGGTTCGGTACGCAATGCAGAACCCGGGGTCGTATGTTCACAGCAACATTGCTGGGTTTGTGAATCTTCTAGAAGTGTGTAAATCGGTGAATCCGCAGCCGGCGATTGTCTGGGCCTCGTCGAGTTCGGTTTATGGGCTCAATTCGAAGGTGCCGTTTTCGGAGAAGGACAGGACTGACCAGCCGGCGAGTCTTTATGCTGCTACAAAGAAGGCTGGAGAGGAGATCGCTCATACTTATAACCACATTTACGGGCTTTCGATTACCGGGTTGAGGTTTTTCACTGTTTACGGGCCGTGGGGGAGGCCTGACATGGCTTACTTTTTCTTTACTAAGGATATTTTGAAAGGGAAGCCGATTACGATCTTTGAAGCTCCTGGTCATGGCTCTGTGGCCAGAGATTTTACCTACATTGATGATATTGTGAAGGGTTGTGTGGCGTCGTTGGATACAGCAAAGAAGAGTACAGGGAGTGGTGGGAAGAAGAAGGGTCCTGCGCAGTTGAGGGTGTTCAATTTGGGGAACACGTCGCCTGTGCCGGTGAGTAACCTTGTGAGCATTTTGGAGAAGCATTTGAAGGTTAAGGCGAAAAGGAAGGTGTTGCCAATGCCGAGGAATGGGGATGTGATGTTTACGCATGCCAATATAAGCTTAGCACACAAGGAGCTCAGGTACAAGCCTAGCACAGATTTGCAGACGGGGCTGAAGAAGTTTGTGAAGTGGTACCTCAATTATTATCATGGGTCTAAGAAGAGGATTAGTGCCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
DUF223 Helitron_like_N PIF1 REPA_OB_2 Rep_fac-A_C

Protein Analysis

436

Amino Acids

48.67

Weight (kDa)

9.92

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 96 - 278 2.2e-13 RmlD substrate binding domain
Epimerase PF01370 97 - 333 5.8e-52 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 97 - 303 8.8e-09 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 98 - 417 8.8e-48 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 98 - 380 1.1e-15 3-beta hydroxysteroid dehydrogenase/isomerase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000050)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_2g06412 FvH4_2g08146 FvH4_2g10321 FvH4_2g13511 FvH4_2g20780 FvH4_2g20781 FvH4_2g22171 FvH4_2g25221 FvH4_3g03500 FvH4_3g07130 FvH4_3g10140 FvH4_3g10141 FvH4_3g24350 FvH4_4g08242 FvH4_4g13410 FvH4_4g18140 FvH4_4g22470 FvH4_5g19920 FvH4_5g21501 FvH4_5g26612 FvH4_5g29621 FvH4_5g31990 FvH4_6g00280 FvH4_6g00280 FvH4_6g07190 FvH4_6g07190 FvH4_6g07190 FvH4_6g07190 FvH4_6g07190 FvH4_6g08820 FvH4_6g29600 FvH4_6g30401 FvH4_6g33630 FvH4_7g08310 FvH4_7g08311 FvH4_7g10871 FvH4_7g18890 FvH4_7g18891
malus_domestica MD01G1202900.v1.1 MD02G1249900.v1.1 MD03G1022200.v1.1 MD03G1164900.v1.1 MD04G1002000.v1.1 MD05G1167800.v1.1 MD05G1167900.v1.1 MD05G1202200.v1.1 MD05G1215800.v1.1 MD05G1328800.v1.1 MD07G1020000.v1.1 MD07G1020100.v1.1 MD07G1084700.v1.1 MD08G1007900.v1.1 MD08G1229500.v1.1 MD09G1016000.v1.1 MD09G1184200.v1.1 MD10G1198800.v1.1 MD10G1198900.v1.1 MD11G1203900.v1.1 MD12G1081100.v1.1 MD12G1101700.v1.1 MD13G1126700.v1.1 MD13G1158300.v1.1 MD13G1161500.v1.1 MD14G1083800.v1.1 MD14G1125700.v1.1 MD14G1159700.v1.1 MD14G1159800.v1.1 MD17G1252600.v1.1 MD17G1261900.v1.1 MD17G1262000.v1.1
pyrus_communis pycom01g12270 pycom02g14690 pycom02g17560 pycom02g26880 pycom02g26890 pycom03g13090 pycom03g19990 pycom03g20000 pycom04g00130 pycom04g05050 pycom04g10460 pycom05g27190 pycom07g05970 pycom08g02820 pycom08g11570 pycom09g07420 pycom09g07430 pycom09g08580 pycom10g06760 pycom10g11210 pycom10g11220 pycom11g14380 pycom11g21990 pycom12419g00230 pycom12494g00020 pycom14g06150 pycom15g09750 pycom15g20130 pycom15g27020 pycom15g27230 pycom16g17550 pycom16g18200 pycom5153684g00260 pycom520g00040
rosa_chinensis RchiOBHm_Chr1g0320331 RchiOBHm_Chr1g0329871 RchiOBHm_Chr1g0339991 RchiOBHm_Chr1g0371171 RchiOBHm_Chr1g0378741 RchiOBHm_Chr1g0378751 RchiOBHm_Chr1g0379271 RchiOBHm_Chr2g0122381 RchiOBHm_Chr2g0133251 RchiOBHm_Chr2g0133271 RchiOBHm_Chr2g0133331 RchiOBHm_Chr2g0135141 RchiOBHm_Chr2g0141711 RchiOBHm_Chr2g0145531 RchiOBHm_Chr2g0149141 RchiOBHm_Chr2g0149151 RchiOBHm_Chr2g0150581 RchiOBHm_Chr2g0159361 RchiOBHm_Chr2g0162161 RchiOBHm_Chr2g0174211 RchiOBHm_Chr3g0484061 RchiOBHm_Chr3g0491361 RchiOBHm_Chr4g0413141 RchiOBHm_Chr4g0444601 RchiOBHm_Chr5g0004901 RchiOBHm_Chr5g0004911 RchiOBHm_Chr5g0010461 RchiOBHm_Chr5g0027941 RchiOBHm_Chr5g0028311 RchiOBHm_Chr5g0030141 RchiOBHm_Chr5g0035621 RchiOBHm_Chr5g0050871 RchiOBHm_Chr5g0053321 RchiOBHm_Chr5g0060091 RchiOBHm_Chr5g0063301 RchiOBHm_Chr5g0066571 RchiOBHm_Chr5g0067561 RchiOBHm_Chr6g0262741 RchiOBHm_Chr7g0184001 RchiOBHm_Chr7g0206181 RchiOBHm_Chr7g0212031 RchiOBHm_Chr7g0214521 RchiOBHm_Chr7g0230521 RchiOBHm_Chr7g0230621
rosa_laevigata RLG00000014424 RLG00000022069 RLG00000036206
rosa_multiflora Rmu_sc0000121.1_g000006 Rmu_sc0000271.1_g000001 Rmu_sc0000293.1_g000010 Rmu_sc0000309.1_g000052 Rmu_sc0000556.1_g000045 Rmu_sc0000837.1_g000079 Rmu_sc0001069.1_g000026 Rmu_sc0001198.1_g000001 Rmu_sc0001353.1_g000031 Rmu_sc0001461.1_g000107 Rmu_sc0002011.1_g000038 Rmu_sc0003270.1_g000034 Rmu_sc0003874.1_g000017 Rmu_sc0004729.1_g000006 Rmu_sc0007116.1_g000001 Rmu_sc0009087.1_g000019 Rmu_sc0009877.1_g000004 Rmu_sc0015060.1_g000008 Rmu_sc0016097.1_g000001
rosa_roxburghii Rroxscaffold_1G00024140 Rroxscaffold_1G00027240 Rroxscaffold_1G00030710 Rroxscaffold_1G00035010 Rroxscaffold_1G00050490 Rroxscaffold_1G00069340 Rroxscaffold_1G00072870 Rroxscaffold_2G00078360 Rroxscaffold_2G00098490 Rroxscaffold_2G00106110 Rroxscaffold_2G00109450 Rroxscaffold_2G00125260 Rroxscaffold_2G00154260 Rroxscaffold_3G00221290 Rroxscaffold_3G00221300 Rroxscaffold_3G00232770 Rroxscaffold_3G00249670 Rroxscaffold_3G00255640 Rroxscaffold_3G00255820 Rroxscaffold_3G00255870 Rroxscaffold_3G00258160 Rroxscaffold_3G00258170 Rroxscaffold_3G00265290 Rroxscaffold_4G00320550 Rroxscaffold_4G00322930 Rroxscaffold_4G00331930 Rroxscaffold_4G00332460 Rroxscaffold_5G00337730 Rroxscaffold_5G00364590 Rroxscaffold_5G00365660 Rroxscaffold_5G00373900 Rroxscaffold_6G00395750 Rroxscaffold_6G00397090 Rroxscaffold_6G00407660 Rroxscaffold_6G00421590 Rroxscaffold_7G00156820 Rroxscaffold_7G00174040 Rroxscaffold_7G00175610 Rroxscaffold_7G00182780 Rroxscaffold_7G00210390 Rroxscaffold_7G00210490 Rroxscaffold_7G00214770 Rroxscaffold_7G00215580 Rroxscaffold_7G00215690
rosa_rugosa Rorug01G0099600 Rorug01G0127300 Rorug02G0145300 Rorug02G0145400 Rorug02G0145500.1 Rorug02G0145600 Rorug02G0145700 Rorug02G0145700 Rorug02G0278400 Rorug02G0444700 Rorug02G0542800 Rorug02G0547200 Rorug04G0015900 Rorug04G0082400 Rorug04G0297900 Rorug05G0078200 Rorug05G0207900 Rorug05G0277000 Rorug05G0528600 Rorug05G0528700 Rorug05G0528800 Rorug06G0001000 Rorug06G0246500 Rorug06G0246600 Rorug06G0246700 Rorug07G0189200 Rorug07G0189300 Rorug07G0189400 Rorug07G0189500 Rorug07G0212200 Rorug07G0212200 Rorug07G0221500 Rorug07G0248800
rosa_samantha Rh1AG011600 Rh1AG052100 Rh1AG163900 Rh1BG006600 Rh1BG025100 Rh1BG025200 Rh1BG032500 Rh1BG374400 Rh1BG374500 Rh1CG153000 Rh1DG148800 Rh1DG160400 Rh1DG181900 Rh1DG405100 Rh1DG445600 Rh2AG005600 Rh2AG137100 Rh2AG150500 Rh2AG150600 Rh2AG243200 Rh2AG264300 Rh2AG349900 Rh2AG387700 Rh2AG485100 Rh2CG115600 Rh2CG269600 Rh2CG294000 Rh2CG294100 Rh2CG317700 Rh2CG375000 Rh2CG471200 Rh2CG611400 Rh2DG070000 Rh2DG073900 Rh2DG234600 Rh3AG258200 Rh3CG251500 Rh3CG283900 Rh3CG331200 Rh3CG371500 Rh3DG077300 Rh3DG185900 Rh3DG332700 Rh3DG360400 Rh4AG105100 Rh4BG191100 Rh4DG139800 Rh4DG186000 Rh4DG187900 Rh5AG302000 Rh5AG431600 Rh5CG090000 Rh5CG214700 Rh5CG299100 Rh5CG561200 Rh5DG205600 Rh5DG244500 Rh5DG257300 Rh5DG257400 Rh5DG325900 Rh5DG335500 Rh5DG359300 Rh5DG364600 Rh5DG388600 Rh6AG013900 Rh6BG045400 Rh6CG031300 Rh6CG069100 Rh6CG157500 Rh6DG029800 Rh6DG066100 Rh6DG260800 Rh6DG320100 Rh7AG007600 Rh7BG046100 Rh7BG053900 Rh7BG204900 Rh7BG322600 Rh7BG421200 Rh7DG063200 Rh7DG233200 Rh7DG287000 Rh7DG289600 Rh7DG323500 Rh7DG323800 Rh7DG323900
rosa_wichuraiana Rw0G001160 Rw0G003580 Rw0G003590 Rw0G005910 Rw0G006230 Rw0G010240 Rw0G011660 Rw0G015630 Rw0G021440 Rw0G023690 Rw1G000060 Rw1G006170 Rw1G007940 Rw1G008630 Rw1G009460 Rw1G013800 Rw1G015100 Rw1G015710 Rw1G016040 Rw1G024780 Rw2G004590 Rw2G026770 Rw2G030550 Rw2G036430 Rw3G011440 Rw3G020600 Rw3G020710 Rw3G025390 Rw3G026320 Rw4G003380 Rw4G016140 Rw4G018350 Rw4G027460 Rw5G004690 Rw5G011140 Rw5G011820 Rw5G016560 Rw5G023230 Rw5G027290 Rw5G028520 Rw5G040540 Rw5G046050 Rw6G013650 Rw6G018020 Rw6G019800 Rw6G023450 Rw7G027610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AatII GACGTC 1 cut(s) 501
Acc16I TGCGCA 1 cut(s) 1038
Acc65I GGTACC 1 cut(s) 1263
AccB1I GGYRCC 3 cut(s) 302, 691, 1263
AccBSI CCGCTC 1 cut(s) 258
AccII CGCG 4 cut(s) 107, 351, 411, 473
AcoI YGGCCR 1 cut(s) 933
AcuI CTGAAG 4 cut(s) 32, 362, 425, 1265
AcyI GRCGYC 5 cut(s) 303, 360, 441, 498, 980
AfaI GTAC 4 cut(s) 551, 1006, 1214, 1265
AfiI CCNNNNNNNGG 6 cut(s) 204, 238, 546, 813, 923, 1157
AflIII ACRYGT 3 cut(s) 105, 471, 1065
AgsI TTSAA 6 cut(s) 61, 382, 886, 911, 1054, 1117
AjiI CACGTC 2 cut(s) 328, 1068
AjnI CCWGG 4 cut(s) 221, 525, 916, 1304
AluBI AGCT 8 cut(s) 10, 64, 121, 424, 490, 914, 1191, 1207
AluI AGCT 8 cut(s) 10, 64, 121, 424, 490, 914, 1191, 1207
Alw21I GWGCWC 1 cut(s) 1209
Alw26I GTCTC 2 cut(s) 195, 334
Ama87I CYCGRG 2 cut(s) 65, 565
AoxI GGCC 8 cut(s) 229, 273, 336, 537, 654, 833, 845, 933
ApeKI GCWGC 2 cut(s) 637, 740
AsiSI GCGATCGC 1 cut(s) 415
Asp700I GAANNNNTTC 1 cut(s) 491
Asp718I GGTACC 1 cut(s) 1263
AspLEI GCGC 4 cut(s) 305, 348, 411, 1039
AspS9I GGNCC 9 cut(s) 132, 207, 230, 274, 321, 337, 654, 833, 1031
AsuC2I CCSGG 6 cut(s) 51, 202, 541, 566, 567, 808
AsuHPI GGTGA 7 cut(s) 80, 115, 244, 277, 289, 640, 1093
AsuII TTCGAA 1 cut(s) 686
AvaI CYCGRG 2 cut(s) 65, 565
AvaII GGWCC 4 cut(s) 132, 207, 321, 1031
AxyI CCTNAGG 1 cut(s) 95
BalI TGGCCA 1 cut(s) 935
BanI GGYRCC 3 cut(s) 302, 691, 1263
BanII GRGCYC 3 cut(s) 285, 681, 1209
BbsI GAAGAC 2 cut(s) 142, 436
Bbv12I GWGCWC 1 cut(s) 1209
BbvCI CCTCAGC 1 cut(s) 482
BbvI GCAGC 2 cut(s) 649, 727
BceAI ACGGC 7 cut(s) 166, 172, 373, 454, 490, 679, 820
BciT130I CCWGG 4 cut(s) 223, 527, 918, 1306
BciVI GTATCC 1 cut(s) 982
BcnI CCSGG 6 cut(s) 51, 202, 541, 566, 567, 808
BcoDI GTCTC 2 cut(s) 195, 334
BfaI CTAG 2 cut(s) 611, 1221
BfoI RGCGCY 2 cut(s) 306, 349
BfuI GTATCC 1 cut(s) 982
BisI GCNGC 7 cut(s) 229, 306, 349, 352, 531, 638, 741
BlpI GCTNAGC 1 cut(s) 1192
BlsI GCNGC 7 cut(s) 230, 307, 350, 353, 532, 639, 742
Bme18I GGWCC 4 cut(s) 132, 207, 321, 1031
BmeT110I CYCGRG 2 cut(s) 65, 565
BmgBI CACGTC 2 cut(s) 328, 1068
BmgT120I GGNCC 9 cut(s) 132, 207, 230, 274, 321, 337, 654, 833, 1031
BmiI GGNNCC 9 cut(s) 101, 209, 232, 304, 322, 323, 693, 1032, 1265
BoxI GACNNNNGTC 1 cut(s) 326
BpiI GAAGAC 2 cut(s) 142, 436
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 3 cut(s) 482, 534, 1208
Bpu1102I GCTNAGC 1 cut(s) 1192
Bpu14I TTCGAA 1 cut(s) 686
BpuMI CCSGG 6 cut(s) 51, 202, 541, 566, 567, 808
Bsa29I ATCGAT 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 902
BsaHI GRCGYC 5 cut(s) 303, 360, 441, 498, 980
BsaXI ACNNNNNCTCC 6 cut(s) 26, 56, 158, 188, 1196, 1226
Bsc4I CCNNNNNNNGG 6 cut(s) 204, 238, 546, 813, 923, 1157
Bse118I RCCGGY 5 cut(s) 299, 308, 640, 724, 1078
Bse21I CCTNAGG 1 cut(s) 95
Bse3DI GCAATG 2 cut(s) 561, 588
Bse8I GATNNNNATC 1 cut(s) 902
BseBI CCWGG 4 cut(s) 223, 527, 918, 1306
BseCI ATCGAT 1 cut(s) 372
BseGI GGATG 1 cut(s) 1168
BseJI GATNNNNATC 1 cut(s) 902
BseLI CCNNNNNNNGG 6 cut(s) 204, 238, 546, 813, 923, 1157
BseMI GCAATG 2 cut(s) 561, 588
BseMII CTCAG 4 cut(s) 109, 473, 548, 1222
BseRI GAGGAG 2 cut(s) 166, 776
BseXI GCAGC 2 cut(s) 649, 727
BseYI CCCAGC 2 cut(s) 75, 593
Bsh1236I CGCG 4 cut(s) 107, 351, 411, 473
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 8 cut(s) 231, 275, 338, 539, 656, 835, 847, 935
BshNI GGYRCC 3 cut(s) 302, 691, 1263
BshVI ATCGAT 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 1209
BsiHKCI CYCGRG 2 cut(s) 65, 565
BslFI GGGAC 3 cut(s) 193, 334, 473
BslI CCNNNNNNNGG 6 cut(s) 204, 238, 546, 813, 923, 1157
BsmAI GTCTC 2 cut(s) 195, 334
BsmBI CGTCTC 2 cut(s) 195, 334
BsmFI GGGAC 3 cut(s) 193, 334, 473
BsnI GGCC 8 cut(s) 231, 275, 338, 539, 656, 835, 847, 935
BsoBI CYCGRG 2 cut(s) 65, 565
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 3 cut(s) 285, 681, 1209
Bsp143I GATC 3 cut(s) 412, 765, 903
Bsp1720I GCTNAGC 1 cut(s) 1192
Bsp19I CCATGG 2 cut(s) 277, 333
BspANI GGCC 8 cut(s) 231, 275, 338, 539, 656, 835, 847, 935
BspCNI CTCAG 4 cut(s) 108, 474, 547, 1221
BspDI ATCGAT 1 cut(s) 372
BspFNI CGCG 4 cut(s) 107, 351, 411, 473
BspLI GGNNCC 9 cut(s) 101, 209, 232, 304, 322, 323, 693, 1032, 1265
BspT104I TTCGAA 1 cut(s) 686
BspT107I GGYRCC 3 cut(s) 302, 691, 1263
BsrBI CCGCTC 1 cut(s) 258
BsrDI GCAATG 2 cut(s) 561, 588
BsrFI RCCGGY 5 cut(s) 299, 308, 640, 724, 1078
BssAI RCCGGY 5 cut(s) 299, 308, 640, 724, 1078
BssMI GATC 3 cut(s) 412, 765, 903
BssNI GRCGYC 5 cut(s) 303, 360, 441, 498, 980
BssT1I CCWWGG 2 cut(s) 277, 333
Bst2UI CCWGG 4 cut(s) 223, 527, 918, 1306
Bst4CI ACNGT 2 cut(s) 289, 826
Bst6I CTCTTC 3 cut(s) 164, 995, 1286
BstACI GRCGYC 5 cut(s) 303, 360, 441, 498, 980
BstBAI YACGTR 1 cut(s) 517
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 4 cut(s) 310, 642, 726, 1179
BstDEI CTNAG 7 cut(s) 95, 482, 534, 873, 1192, 1208, 1287
BstDSI CCRYGG 4 cut(s) 277, 333, 349, 836
BstEII GGTNACC 1 cut(s) 250
BstF5I GGATG 1 cut(s) 1168
BstFNI CGCG 4 cut(s) 107, 351, 411, 473
BstH2I RGCGCY 2 cut(s) 306, 349
BstHHI GCGC 4 cut(s) 305, 348, 411, 1039
BstKTI GATC 3 cut(s) 415, 768, 906
BstMAI GTCTC 2 cut(s) 195, 334
BstMBI GATC 3 cut(s) 412, 765, 903
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 7 cut(s) 118, 309, 357, 408, 487, 536, 1240
BstNI CCWGG 4 cut(s) 223, 527, 918, 1306
BstNSI RCATGY 1 cut(s) 1181
BstPAI GACNNNNGTC 1 cut(s) 326
BstPI GGTNACC 1 cut(s) 250
BstUI CGCG 4 cut(s) 107, 351, 411, 473
BstV1I GCAGC 2 cut(s) 649, 727
BstV2I GAAGAC 2 cut(s) 142, 436
Bsu15I ATCGAT 1 cut(s) 372
Bsu36I CCTNAGG 1 cut(s) 95
BsuI GTATCC 1 cut(s) 982
BsuRI GGCC 8 cut(s) 231, 275, 338, 539, 656, 835, 847, 935
BsuTUI ATCGAT 1 cut(s) 372
BtgI CCRYGG 4 cut(s) 277, 333, 349, 836
BtrI CACGTC 2 cut(s) 328, 1068
BtsCI GGATG 1 cut(s) 1168
BtsIMutI CAGTG 1 cut(s) 822
Cac8I GCNNGC 4 cut(s) 310, 642, 726, 1179
CfoI GCGC 4 cut(s) 305, 348, 411, 1039
Cfr10I RCCGGY 5 cut(s) 299, 308, 640, 724, 1078
Cfr13I GGNCC 9 cut(s) 132, 207, 230, 274, 321, 337, 654, 833, 1031
Cfr42I CCGCGG 1 cut(s) 352
Cfr9I CCCGGG 1 cut(s) 565
ClaI ATCGAT 1 cut(s) 372
CseI GACGC 6 cut(s) 96, 349, 430, 462, 479, 969
Csp6I GTAC 4 cut(s) 550, 1005, 1213, 1264
CviAII CATG 6 cut(s) 278, 334, 853, 923, 1178, 1280
CviQI GTAC 4 cut(s) 550, 1005, 1213, 1264
DdeI CTNAG 7 cut(s) 95, 482, 534, 873, 1192, 1208, 1287
DinI GGCGCC 1 cut(s) 304
DpnI GATC 3 cut(s) 414, 767, 905
DpnII GATC 3 cut(s) 412, 765, 903
EaeI YGGCCR 1 cut(s) 933
Eam1104I CTCTTC 3 cut(s) 164, 995, 1286
EarI CTCTTC 3 cut(s) 164, 995, 1286
EciI GGCGGA 1 cut(s) 250
Ecl136II GAGCTC 1 cut(s) 1207
Eco130I CCWWGG 2 cut(s) 277, 333
Eco147I AGGCCT 1 cut(s) 847
Eco24I GRGCYC 3 cut(s) 285, 681, 1209
Eco47I GGWCC 4 cut(s) 132, 207, 321, 1031
Eco53kI GAGCTC 1 cut(s) 1207
Eco57I CTGAAG 4 cut(s) 32, 362, 425, 1265
Eco81I CCTNAGG 1 cut(s) 95
Eco88I CYCGRG 2 cut(s) 65, 565
Eco91I GGTNACC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 1207
EcoO109I RGGNCCY 2 cut(s) 321, 1031
EcoO65I GGTNACC 1 cut(s) 250
EcoRII CCWGG 4 cut(s) 221, 525, 916, 1304
EcoT14I CCWWGG 2 cut(s) 277, 333
EcoT38I GRGCYC 3 cut(s) 285, 681, 1209
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
ErhI CCWWGG 2 cut(s) 277, 333
Esp3I CGTCTC 2 cut(s) 195, 334
FaeI CATG 6 cut(s) 281, 337, 856, 926, 1181, 1283
FaqI GGGAC 3 cut(s) 193, 334, 473
FatI CATG 6 cut(s) 277, 333, 852, 922, 1177, 1279
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 7 cut(s) 229, 306, 349, 352, 531, 638, 741
FokI GGATG 1 cut(s) 1175
FriOI GRGCYC 3 cut(s) 285, 681, 1209
Fsp4HI GCNGC 7 cut(s) 229, 306, 349, 352, 531, 638, 741
FspBI CTAG 2 cut(s) 611, 1221
FspI TGCGCA 1 cut(s) 1038
GlaI GCGC 4 cut(s) 304, 347, 410, 1038
GluI GCNGC 7 cut(s) 229, 306, 349, 352, 531, 638, 741
GsaI CCCAGC 2 cut(s) 79, 597
GsuI CTGGAG 1 cut(s) 777
HaeII RGCGCY 2 cut(s) 306, 349
HaeIII GGCC 8 cut(s) 231, 275, 338, 539, 656, 835, 847, 935
HgaI GACGC 6 cut(s) 96, 349, 430, 462, 479, 969
HhaI GCGC 4 cut(s) 305, 348, 411, 1039
Hin1I GRCGYC 5 cut(s) 303, 360, 441, 498, 980
Hin1II CATG 6 cut(s) 281, 337, 856, 926, 1181, 1283
Hin6I GCGC 4 cut(s) 303, 346, 409, 1037
HinP1I GCGC 4 cut(s) 303, 346, 409, 1037
HindIII AAGCTT 2 cut(s) 422, 1189
HinfI GANTC 5 cut(s) 218, 369, 604, 631, 730
HphI GGTGA 7 cut(s) 80, 115, 244, 277, 289, 640, 1093
Hpy166II GTNNAC 4 cut(s) 510, 580, 829, 1173
Hpy188I TCNGA 1 cut(s) 703
Hpy188III TCNNGA 4 cut(s) 67, 319, 428, 611
Hpy8I GTNNAC 4 cut(s) 510, 580, 829, 1173
HpyAV CCTTC 9 cut(s) 148, 449, 682, 700, 745, 961, 1021, 1111, 1129
HpyCH4III ACNGT 2 cut(s) 289, 826
HpyCH4IV ACGT 5 cut(s) 168, 327, 498, 516, 1067
HpyCH4V TGCA 3 cut(s) 523, 559, 1234
HpyF10VI GCNNNNNNNGC 7 cut(s) 118, 309, 357, 408, 487, 536, 1240
HpyF3I CTNAG 7 cut(s) 95, 482, 534, 873, 1192, 1208, 1287
HpySE526I ACGT 5 cut(s) 168, 327, 498, 516, 1067
Hsp92I GRCGYC 5 cut(s) 303, 360, 441, 498, 980
Hsp92II CATG 6 cut(s) 281, 337, 856, 926, 1181, 1283
HspAI GCGC 4 cut(s) 303, 346, 409, 1037
KasI GGCGCC 1 cut(s) 302
KflI GGGWCCC 1 cut(s) 321
KpnI GGTACC 1 cut(s) 1267
KroI GCCGGC 3 cut(s) 308, 640, 724
KroNI GCCGGC 3 cut(s) 310, 642, 726
KspI CCGCGG 1 cut(s) 352
Kzo9I GATC 3 cut(s) 412, 765, 903
LmnI GCTCC 3 cut(s) 263, 919, 1204
Lsp1109I GCAGC 2 cut(s) 649, 727
MaeI CTAG 2 cut(s) 611, 1221
MaeII ACGT 5 cut(s) 168, 327, 498, 516, 1067
MaeIII GTNAC 4 cut(s) 3, 250, 295, 1085
MalI GATC 3 cut(s) 414, 767, 905
MbiI CCGCTC 1 cut(s) 258
MboI GATC 3 cut(s) 412, 765, 903
MhlI GDGCHC 3 cut(s) 285, 681, 1209
MlsI TGGCCA 1 cut(s) 935
MluCI AATT 4 cut(s) 18, 682, 1054, 1270
MluI ACGCGT 2 cut(s) 105, 471
MluNI TGGCCA 1 cut(s) 935
Mly113I GGCGCC 1 cut(s) 303
MlyI GAGTC 2 cut(s) 212, 739
MmeI TCCRAC 1 cut(s) 966
Mox20I TGGCCA 1 cut(s) 935
MroNI GCCGGC 3 cut(s) 308, 640, 724
MroXI GAANNNNTTC 1 cut(s) 491
MscI TGGCCA 1 cut(s) 935
MseI TTAA 1 cut(s) 1122
MslI CAYNNNNRTG 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 935
MspA1I CMGCKG 2 cut(s) 10, 351
MvaI CCWGG 4 cut(s) 223, 527, 918, 1306
MvnI CGCG 4 cut(s) 107, 351, 411, 473
MwoI GCNNNNNNNGC 7 cut(s) 118, 309, 357, 408, 487, 536, 1240
NaeI GCCGGC 3 cut(s) 310, 642, 726
NarI GGCGCC 1 cut(s) 303
NciI CCSGG 6 cut(s) 51, 202, 541, 566, 567, 808
NcoI CCATGG 2 cut(s) 277, 333
NdeII GATC 3 cut(s) 412, 765, 903
NgoMIV GCCGGC 3 cut(s) 308, 640, 724
NlaIII CATG 6 cut(s) 281, 337, 856, 926, 1181, 1283
NlaIV GGNNCC 9 cut(s) 101, 209, 232, 304, 322, 323, 693, 1032, 1265
NmeAIII GCCGAG 2 cut(s) 251, 1176
NmuCI GTSAC 3 cut(s) 3, 250, 295
NsbI TGCGCA 1 cut(s) 1038
NspI RCATGY 1 cut(s) 1181
NspV TTCGAA 1 cut(s) 686
PaeI GCATGC 1 cut(s) 1181
PaeR7I CTCGAG 1 cut(s) 65
PceI AGGCCT 1 cut(s) 847
PcsI WCGNNNNNNNCGW 4 cut(s) 185, 324, 444, 692
PdiI GCCGGC 3 cut(s) 310, 642, 726
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 3 cut(s) 369, 604, 631
PflFI GACNNNGTC 1 cut(s) 359
PkrI GCNGC 7 cut(s) 230, 307, 350, 353, 532, 639, 742
Ple19I CGATCG 1 cut(s) 415
PleI GAGTC 2 cut(s) 212, 738
PluTI GGCGCC 1 cut(s) 306
PpsI GAGTC 2 cut(s) 212, 738
Ppu21I YACGTR 1 cut(s) 517
PpuMI RGGWCCY 2 cut(s) 321, 1031
PshAI GACNNNNGTC 1 cut(s) 326
PsiI TTATAA 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 1209
Psp5II RGGWCCY 2 cut(s) 321, 1031
Psp6I CCWGG 4 cut(s) 221, 525, 916, 1304
PspEI GGTNACC 1 cut(s) 250
PspFI CCCAGC 2 cut(s) 75, 593
PspGI CCWGG 4 cut(s) 221, 525, 916, 1304
PspN4I GGNNCC 9 cut(s) 101, 209, 232, 304, 322, 323, 693, 1032, 1265
PspPI GGNCC 9 cut(s) 132, 207, 230, 274, 321, 337, 654, 833, 1031
PspPPI RGGWCCY 2 cut(s) 321, 1031
PsyI GACNNNGTC 1 cut(s) 359
PvuI CGATCG 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 10
RgaI GCGATCGC 1 cut(s) 415
RsaI GTAC 4 cut(s) 551, 1006, 1214, 1265
RsaNI GTAC 4 cut(s) 550, 1005, 1213, 1264
RseI CAYNNNNRTG 1 cut(s) 30
SacI GAGCTC 1 cut(s) 1209
SacII CCGCGG 1 cut(s) 352
SaqAI TTAA 1 cut(s) 1122
SatI GCNGC 7 cut(s) 229, 306, 349, 352, 531, 638, 741
Sau3AI GATC 3 cut(s) 412, 765, 903
Sau96I GGNCC 9 cut(s) 132, 207, 230, 274, 321, 337, 654, 833, 1031
SchI GAGTC 2 cut(s) 212, 739
SduI GDGCHC 3 cut(s) 285, 681, 1209
SfaAI GCGATCGC 1 cut(s) 415
SfoI GGCGCC 1 cut(s) 304
Sfr274I CTCGAG 1 cut(s) 65
Sfr303I CCGCGG 1 cut(s) 352
SfuI TTCGAA 1 cut(s) 686
SgfI GCGATCGC 1 cut(s) 415
SgrAI CRCCGGYG 1 cut(s) 299
SgrBI CCGCGG 1 cut(s) 352
SinI GGWCC 4 cut(s) 132, 207, 321, 1031
SlaI CTCGAG 1 cut(s) 65
SmaI CCCGGG 1 cut(s) 567
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SphI GCATGC 1 cut(s) 1181
Sse9I AATT 4 cut(s) 18, 682, 1054, 1270
SseBI AGGCCT 1 cut(s) 847
SspDI GGCGCC 1 cut(s) 302
SspMI CTAG 2 cut(s) 611, 1221
SstI GAGCTC 1 cut(s) 1209
StuI AGGCCT 1 cut(s) 847
StyI CCWWGG 2 cut(s) 277, 333
TaaI ACNGT 2 cut(s) 289, 826
TaiI ACGT 5 cut(s) 171, 330, 501, 519, 1070
TaqI TCGA 6 cut(s) 66, 372, 495, 662, 686, 800
TasI AATT 4 cut(s) 18, 682, 1054, 1270
TatI WGTACW 1 cut(s) 1004
TauI GCSGC 5 cut(s) 231, 308, 351, 354, 533
TfiI GAWTC 3 cut(s) 369, 604, 631
Tru1I TTAA 1 cut(s) 1122
Tru9I TTAA 1 cut(s) 1122
TscAI CASTG 1 cut(s) 829
TseFI GTSAC 3 cut(s) 3, 250, 295
TseI GCWGC 2 cut(s) 637, 740
Tsp45I GTSAC 3 cut(s) 3, 250, 295
TspDTI ATGAA 1 cut(s) 142
TspMI CCCGGG 1 cut(s) 565
TspRI CASTG 1 cut(s) 829
Tth111I GACNNNGTC 1 cut(s) 359
VpaK11BI GGWCC 4 cut(s) 132, 207, 321, 1031
XbaI TCTAGA 1 cut(s) 610
XceI RCATGY 1 cut(s) 1181
XhoI CTCGAG 1 cut(s) 65
XmaI CCCGGG 1 cut(s) 565
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 2 cut(s) 611, 1221
ZraI GACGTC 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.