DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 472 |
| Acc36I | ACCTGC | 1 cut(s) | 236 |
| AciI | CCGC | 2 cut(s) | 315, 320 |
| AcsI | RAATTY | 2 cut(s) | 188, 478 |
| AcyI | GRCGYC | 1 cut(s) | 469 |
| AfaI | GTAC | 1 cut(s) | 404 |
| AflII | CTTAAG | 1 cut(s) | 67 |
| AgsI | TTSAA | 4 cut(s) | 178, 193, 382, 423 |
| AluBI | AGCT | 2 cut(s) | 131, 388 |
| AluI | AGCT | 2 cut(s) | 131, 388 |
| Alw21I | GWGCWC | 1 cut(s) | 375 |
| Alw44I | GTGCAC | 1 cut(s) | 371 |
| ApaLI | GTGCAC | 1 cut(s) | 371 |
| ApeKI | GCWGC | 1 cut(s) | 338 |
| ApoI | RAATTY | 2 cut(s) | 188, 478 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 434 |
| AspLEI | GCGC | 1 cut(s) | 208 |
| AsuHPI | GGTGA | 1 cut(s) | 175 |
| BaeGI | GKGCMC | 1 cut(s) | 375 |
| Bbv12I | GWGCWC | 1 cut(s) | 375 |
| BbvI | GCAGC | 1 cut(s) | 350 |
| BccI | CCATC | 2 cut(s) | 23, 462 |
| BfaI | CTAG | 2 cut(s) | 219, 465 |
| BfrI | CTTAAG | 1 cut(s) | 67 |
| BfuAI | ACCTGC | 1 cut(s) | 236 |
| BisI | GCNGC | 1 cut(s) | 339 |
| BlsI | GCNGC | 1 cut(s) | 340 |
| BmsI | GCATC | 1 cut(s) | 47 |
| BsaHI | GRCGYC | 1 cut(s) | 469 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 93, 123 |
| Bse1I | ACTGG | 2 cut(s) | 171, 376 |
| BseNI | ACTGG | 2 cut(s) | 171, 376 |
| BseSI | GKGCMC | 1 cut(s) | 375 |
| BseXI | GCAGC | 1 cut(s) | 350 |
| BsiHKAI | GWGCWC | 1 cut(s) | 375 |
| Bsp1286I | GDGCHC | 1 cut(s) | 375 |
| Bsp143I | GATC | 1 cut(s) | 51 |
| BspACI | CCGC | 2 cut(s) | 315, 320 |
| BspHI | TCATGA | 1 cut(s) | 426 |
| BspMI | ACCTGC | 1 cut(s) | 236 |
| BspTI | CTTAAG | 1 cut(s) | 67 |
| BsrI | ACTGG | 2 cut(s) | 171, 376 |
| BssMI | GATC | 1 cut(s) | 51 |
| BssNI | GRCGYC | 1 cut(s) | 469 |
| Bst4CI | ACNGT | 2 cut(s) | 370, 402 |
| BstACI | GRCGYC | 1 cut(s) | 469 |
| BstAFI | CTTAAG | 1 cut(s) | 67 |
| BstC8I | GCNNGC | 1 cut(s) | 204 |
| BstHHI | GCGC | 1 cut(s) | 208 |
| BstKTI | GATC | 1 cut(s) | 54 |
| BstMBI | GATC | 1 cut(s) | 51 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 228 |
| BstSLI | GKGCMC | 1 cut(s) | 375 |
| BstV1I | GCAGC | 1 cut(s) | 350 |
| BtsIMutI | CAGTG | 1 cut(s) | 375 |
| BveI | ACCTGC | 1 cut(s) | 236 |
| Cac8I | GCNNGC | 1 cut(s) | 204 |
| CciI | TCATGA | 1 cut(s) | 426 |
| CfoI | GCGC | 1 cut(s) | 208 |
| Csp6I | GTAC | 1 cut(s) | 403 |
| CviAII | CATG | 2 cut(s) | 160, 427 |
| CviJI | RGCY | 5 cut(s) | 131, 202, 222, 289, 388 |
| CviKI_1 | RGCY | 5 cut(s) | 131, 202, 222, 289, 388 |
| CviQI | GTAC | 1 cut(s) | 403 |
| DpnI | GATC | 1 cut(s) | 53 |
| DpnII | GATC | 1 cut(s) | 51 |
| FaeI | CATG | 2 cut(s) | 163, 430 |
| FaiI | YATR | 9 cut(s) | 97, 125, 161, 225, 302, 428, 434, 443, 487 |
| FatI | CATG | 2 cut(s) | 159, 426 |
| FauI | CCCGC | 1 cut(s) | 322 |
| Fnu4HI | GCNGC | 1 cut(s) | 339 |
| Fsp4HI | GCNGC | 1 cut(s) | 339 |
| FspBI | CTAG | 2 cut(s) | 219, 465 |
| GlaI | GCGC | 1 cut(s) | 207 |
| GluI | GCNGC | 1 cut(s) | 339 |
| HhaI | GCGC | 1 cut(s) | 208 |
| Hin1I | GRCGYC | 1 cut(s) | 469 |
| Hin1II | CATG | 2 cut(s) | 163, 430 |
| Hin6I | GCGC | 1 cut(s) | 206 |
| HinP1I | GCGC | 1 cut(s) | 206 |
| HincII | GTYRAC | 1 cut(s) | 121 |
| HindII | GTYRAC | 1 cut(s) | 121 |
| HindIII | AAGCTT | 1 cut(s) | 386 |
| HphI | GGTGA | 1 cut(s) | 175 |
| Hpy166II | GTNNAC | 2 cut(s) | 121, 373 |
| Hpy188III | TCNNGA | 4 cut(s) | 245, 349, 427, 465 |
| Hpy8I | GTNNAC | 2 cut(s) | 121, 373 |
| HpyCH4III | ACNGT | 2 cut(s) | 370, 402 |
| HpyCH4IV | ACGT | 1 cut(s) | 469 |
| HpyCH4V | TGCA | 4 cut(s) | 231, 373, 441, 460 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 228 |
| HpySE526I | ACGT | 1 cut(s) | 469 |
| Hsp92I | GRCGYC | 1 cut(s) | 469 |
| Hsp92II | CATG | 2 cut(s) | 163, 430 |
| HspAI | GCGC | 1 cut(s) | 206 |
| Kzo9I | GATC | 1 cut(s) | 51 |
| LpnPI | CCDG | 6 cut(s) | 184, 216, 241, 242, 258, 389 |
| Lsp1109I | GCAGC | 1 cut(s) | 350 |
| LweI | GCATC | 1 cut(s) | 47 |
| MaeI | CTAG | 2 cut(s) | 219, 465 |
| MaeII | ACGT | 1 cut(s) | 469 |
| MalI | GATC | 1 cut(s) | 53 |
| MboI | GATC | 1 cut(s) | 51 |
| MboII | GAAGA | 2 cut(s) | 89, 458 |
| MfeI | CAATTG | 1 cut(s) | 6 |
| MhlI | GDGCHC | 1 cut(s) | 375 |
| MluCI | AATT | 4 cut(s) | 6, 188, 329, 478 |
| MnlI | CCTC | 4 cut(s) | 4, 156, 177, 220 |
| MroXI | GAANNNNTTC | 1 cut(s) | 434 |
| MseI | TTAA | 4 cut(s) | 18, 68, 332, 390 |
| MslI | CAYNNNNRTG | 1 cut(s) | 43 |
| MspCI | CTTAAG | 1 cut(s) | 67 |
| MunI | CAATTG | 1 cut(s) | 6 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 51 |
| NlaIII | CATG | 2 cut(s) | 163, 430 |
| PagI | TCATGA | 1 cut(s) | 426 |
| PdmI | GAANNNNTTC | 1 cut(s) | 434 |
| PkrI | GCNGC | 1 cut(s) | 340 |
| RsaI | GTAC | 1 cut(s) | 404 |
| RsaNI | GTAC | 1 cut(s) | 403 |
| RseI | CAYNNNNRTG | 1 cut(s) | 43 |
| SaqAI | TTAA | 4 cut(s) | 18, 68, 332, 390 |
| SatI | GCNGC | 1 cut(s) | 339 |
| Sau3AI | GATC | 1 cut(s) | 51 |
| SduI | GDGCHC | 1 cut(s) | 375 |
| SetI | ASST | 5 cut(s) | 133, 230, 390, 411, 472 |
| SfaNI | GCATC | 1 cut(s) | 47 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 43 |
| SmlI | CTYRAG | 1 cut(s) | 67 |
| SmoI | CTYRAG | 1 cut(s) | 67 |
| Sse9I | AATT | 4 cut(s) | 6, 188, 329, 478 |
| SsiI | CCGC | 2 cut(s) | 315, 320 |
| SspMI | CTAG | 2 cut(s) | 219, 465 |
| TaaI | ACNGT | 2 cut(s) | 370, 402 |
| TaiI | ACGT | 1 cut(s) | 472 |
| TaqI | TCGA | 2 cut(s) | 135, 348 |
| TasI | AATT | 4 cut(s) | 6, 188, 329, 478 |
| TatI | WGTACW | 1 cut(s) | 402 |
| Tru1I | TTAA | 4 cut(s) | 18, 68, 332, 390 |
| Tru9I | TTAA | 4 cut(s) | 18, 68, 332, 390 |
| TscAI | CASTG | 1 cut(s) | 375 |
| TseI | GCWGC | 1 cut(s) | 338 |
| TspDTI | ATGAA | 3 cut(s) | 226, 317, 443 |
| TspRI | CASTG | 1 cut(s) | 375 |
| Vha464I | CTTAAG | 1 cut(s) | 67 |
| VneI | GTGCAC | 1 cut(s) | 371 |
| XapI | RAATTY | 2 cut(s) | 188, 478 |
| XbaI | TCTAGA | 1 cut(s) | 464 |
| XmnI | GAANNNNTTC | 1 cut(s) | 434 |
| XspI | CTAG | 2 cut(s) | 219, 465 |
| ZraI | GACGTC | 1 cut(s) | 470 |