DNA recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 594 |
| AccI | GTMKAC | 1 cut(s) | 48 |
| AciI | CCGC | 1 cut(s) | 485 |
| AcsI | RAATTY | 2 cut(s) | 152, 646 |
| AgsI | TTSAA | 2 cut(s) | 63, 347 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 426, 458 |
| AluBI | AGCT | 6 cut(s) | 114, 127, 255, 563, 590, 614 |
| AluI | AGCT | 6 cut(s) | 114, 127, 255, 563, 590, 614 |
| Alw26I | GTCTC | 1 cut(s) | 7 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 255 |
| AoxI | GGCC | 1 cut(s) | 328 |
| ApeKI | GCWGC | 2 cut(s) | 249, 252 |
| ApoI | RAATTY | 2 cut(s) | 152, 646 |
| AspS9I | GGNCC | 2 cut(s) | 180, 414 |
| AsuHPI | GGTGA | 1 cut(s) | 380 |
| AvaII | GGWCC | 2 cut(s) | 180, 414 |
| BbsI | GAAGAC | 1 cut(s) | 232 |
| BbvI | GCAGC | 2 cut(s) | 261, 264 |
| BccI | CCATC | 3 cut(s) | 214, 359, 481 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 136, 170 |
| BciVI | GTATCC | 1 cut(s) | 398 |
| BcoDI | GTCTC | 1 cut(s) | 7 |
| BfaI | CTAG | 2 cut(s) | 582, 611 |
| BfmI | CTRYAG | 3 cut(s) | 52, 67, 175 |
| BfuI | GTATCC | 1 cut(s) | 398 |
| BisI | GCNGC | 2 cut(s) | 250, 253 |
| BlsI | GCNGC | 2 cut(s) | 251, 254 |
| Bme18I | GGWCC | 2 cut(s) | 180, 414 |
| BmgT120I | GGNCC | 2 cut(s) | 180, 414 |
| BmsI | GCATC | 2 cut(s) | 181, 459 |
| BpiI | GAAGAC | 1 cut(s) | 232 |
| BpmI | CTGGAG | 2 cut(s) | 428, 549 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 426, 456 |
| Bse1I | ACTGG | 1 cut(s) | 626 |
| Bse3DI | GCAATG | 1 cut(s) | 154 |
| BseGI | GGATG | 2 cut(s) | 196, 450 |
| BseMI | GCAATG | 1 cut(s) | 154 |
| BseMII | CTCAG | 1 cut(s) | 449 |
| BseNI | ACTGG | 1 cut(s) | 626 |
| BseXI | GCAGC | 2 cut(s) | 261, 264 |
| BshFI | GGCC | 1 cut(s) | 330 |
| BsiSI | CCGG | 1 cut(s) | 331 |
| BsmAI | GTCTC | 1 cut(s) | 7 |
| BsmI | GAATGC | 1 cut(s) | 625 |
| BsnI | GGCC | 1 cut(s) | 330 |
| Bsp143I | GATC | 1 cut(s) | 278 |
| BspACI | CCGC | 1 cut(s) | 485 |
| BspANI | GGCC | 1 cut(s) | 330 |
| BspCNI | CTCAG | 1 cut(s) | 450 |
| BspMAI | CTGCAG | 1 cut(s) | 56 |
| BsrDI | GCAATG | 1 cut(s) | 154 |
| BsrI | ACTGG | 1 cut(s) | 626 |
| BssMI | GATC | 1 cut(s) | 278 |
| Bst4CI | ACNGT | 1 cut(s) | 211 |
| Bst6I | CTCTTC | 3 cut(s) | 27, 303, 424 |
| BstC8I | GCNNGC | 1 cut(s) | 106 |
| BstDEI | CTNAG | 2 cut(s) | 265, 458 |
| BstF5I | GGATG | 2 cut(s) | 196, 450 |
| BstKTI | GATC | 1 cut(s) | 281 |
| BstMAI | GTCTC | 1 cut(s) | 7 |
| BstMBI | GATC | 1 cut(s) | 278 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 587 |
| BstNSI | RCATGY | 1 cut(s) | 108 |
| BstSFI | CTRYAG | 3 cut(s) | 52, 67, 175 |
| BstV1I | GCAGC | 2 cut(s) | 261, 264 |
| BstV2I | GAAGAC | 1 cut(s) | 232 |
| BsuI | GTATCC | 1 cut(s) | 398 |
| BsuRI | GGCC | 1 cut(s) | 330 |
| BtgZI | GCGATG | 1 cut(s) | 558 |
| BtsCI | GGATG | 2 cut(s) | 196, 450 |
| BtsI | GCAGTG | 2 cut(s) | 61, 299 |
| BtsIMutI | CAGTG | 2 cut(s) | 61, 299 |
| Cac8I | GCNNGC | 1 cut(s) | 106 |
| CaiI | CAGNNNCTG | 1 cut(s) | 255 |
| Cfr13I | GGNCC | 2 cut(s) | 180, 414 |
| CviAII | CATG | 1 cut(s) | 105 |
| DdeI | CTNAG | 2 cut(s) | 265, 458 |
| DpnI | GATC | 1 cut(s) | 280 |
| DpnII | GATC | 1 cut(s) | 278 |
| Eam1104I | CTCTTC | 3 cut(s) | 27, 303, 424 |
| EarI | CTCTTC | 3 cut(s) | 27, 303, 424 |
| Eco47I | GGWCC | 2 cut(s) | 180, 414 |
| EcoRI | GAATTC | 1 cut(s) | 152 |
| FaeI | CATG | 1 cut(s) | 108 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 375, 407 |
| FatI | CATG | 1 cut(s) | 104 |
| FblI | GTMKAC | 1 cut(s) | 48 |
| Fnu4HI | GCNGC | 2 cut(s) | 250, 253 |
| FokI | GGATG | 2 cut(s) | 203, 437 |
| Fsp4HI | GCNGC | 2 cut(s) | 250, 253 |
| FspBI | CTAG | 2 cut(s) | 582, 611 |
| GluI | GCNGC | 2 cut(s) | 250, 253 |
| GsuI | CTGGAG | 2 cut(s) | 428, 549 |
| HaeIII | GGCC | 1 cut(s) | 330 |
| HapII | CCGG | 1 cut(s) | 331 |
| Hin1II | CATG | 1 cut(s) | 108 |
| HinfI | GANTC | 3 cut(s) | 72, 171, 358 |
| HpaII | CCGG | 1 cut(s) | 331 |
| HphI | GGTGA | 1 cut(s) | 380 |
| Hpy166II | GTNNAC | 4 cut(s) | 49, 166, 271, 371 |
| Hpy188I | TCNGA | 3 cut(s) | 459, 507, 556 |
| Hpy188III | TCNNGA | 4 cut(s) | 260, 362, 412, 445 |
| Hpy8I | GTNNAC | 4 cut(s) | 49, 166, 271, 371 |
| HpyAV | CCTTC | 3 cut(s) | 418, 464, 609 |
| HpyCH4III | ACNGT | 1 cut(s) | 211 |
| HpyCH4V | TGCA | 2 cut(s) | 54, 439 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 587 |
| HpyF3I | CTNAG | 2 cut(s) | 265, 458 |
| Hsp92II | CATG | 1 cut(s) | 108 |
| Kzo9I | GATC | 1 cut(s) | 278 |
| LmnI | GCTCC | 3 cut(s) | 540, 568, 635 |
| LpnPI | CCDG | 9 cut(s) | 2, 318, 344, 397, 458, 524, 579, 589, 607 |
| Lsp1109I | GCAGC | 2 cut(s) | 261, 264 |
| LweI | GCATC | 2 cut(s) | 181, 459 |
| MaeI | CTAG | 2 cut(s) | 582, 611 |
| MaeIII | GTNAC | 1 cut(s) | 116 |
| MalI | GATC | 1 cut(s) | 280 |
| MboI | GATC | 1 cut(s) | 278 |
| MboII | GAAGA | 5 cut(s) | 44, 50, 237, 320, 441 |
| MluCI | AATT | 4 cut(s) | 152, 239, 493, 646 |
| MlyI | GAGTC | 1 cut(s) | 180 |
| MmeI | TCCRAC | 1 cut(s) | 311 |
| MnlI | CCTC | 3 cut(s) | 28, 181, 523 |
| MslI | CAYNNNNRTG | 1 cut(s) | 630 |
| MspA1I | CMGCKG | 1 cut(s) | 255 |
| MspI | CCGG | 1 cut(s) | 331 |
| Mva1269I | GAATGC | 1 cut(s) | 625 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 587 |
| NdeII | GATC | 1 cut(s) | 278 |
| NlaIII | CATG | 1 cut(s) | 108 |
| NspI | RCATGY | 1 cut(s) | 108 |
| PaeI | GCATGC | 1 cut(s) | 108 |
| PctI | GAATGC | 1 cut(s) | 625 |
| PfeI | GAWTC | 2 cut(s) | 72, 358 |
| PkrI | GCNGC | 2 cut(s) | 251, 254 |
| PleI | GAGTC | 1 cut(s) | 179 |
| PpsI | GAGTC | 1 cut(s) | 179 |
| PsiI | TTATAA | 1 cut(s) | 594 |
| PspPI | GGNCC | 2 cut(s) | 180, 414 |
| PstI | CTGCAG | 1 cut(s) | 56 |
| PstNI | CAGNNNCTG | 1 cut(s) | 255 |
| PvuII | CAGCTG | 1 cut(s) | 255 |
| RseI | CAYNNNNRTG | 1 cut(s) | 630 |
| SatI | GCNGC | 2 cut(s) | 250, 253 |
| Sau3AI | GATC | 1 cut(s) | 278 |
| Sau96I | GGNCC | 2 cut(s) | 180, 414 |
| SchI | GAGTC | 1 cut(s) | 180 |
| SfaNI | GCATC | 2 cut(s) | 181, 459 |
| SfcI | CTRYAG | 3 cut(s) | 52, 67, 175 |
| SinI | GGWCC | 2 cut(s) | 180, 414 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 630 |
| SphI | GCATGC | 1 cut(s) | 108 |
| Sse9I | AATT | 4 cut(s) | 152, 239, 493, 646 |
| SsiI | CCGC | 1 cut(s) | 485 |
| SspMI | CTAG | 2 cut(s) | 582, 611 |
| TaaI | ACNGT | 1 cut(s) | 211 |
| TaqI | TCGA | 2 cut(s) | 363, 476 |
| TasI | AATT | 4 cut(s) | 152, 239, 493, 646 |
| TfiI | GAWTC | 2 cut(s) | 72, 358 |
| TscAI | CASTG | 2 cut(s) | 61, 306 |
| TseI | GCWGC | 2 cut(s) | 249, 252 |
| TspDTI | ATGAA | 2 cut(s) | 165, 489 |
| TspRI | CASTG | 2 cut(s) | 61, 306 |
| VpaK11BI | GGWCC | 2 cut(s) | 180, 414 |
| XapI | RAATTY | 2 cut(s) | 152, 646 |
| XceI | RCATGY | 1 cut(s) | 108 |
| XmiI | GTMKAC | 1 cut(s) | 48 |
| XspI | CTAG | 2 cut(s) | 582, 611 |