DNA recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 446 |
| AccB1I | GGYRCC | 1 cut(s) | 406 |
| AccIII | TCCGGA | 1 cut(s) | 337 |
| AciI | CCGC | 4 cut(s) | 23, 84, 146, 262 |
| AclWI | GGATC | 2 cut(s) | 329, 482 |
| AcsI | RAATTY | 4 cut(s) | 11, 71, 103, 438 |
| AfaI | GTAC | 5 cut(s) | 134, 144, 310, 566, 665 |
| AflIII | ACRYGT | 1 cut(s) | 548 |
| AgsI | TTSAA | 5 cut(s) | 29, 77, 187, 268, 437 |
| AjiI | CACGTC | 1 cut(s) | 39 |
| AluBI | AGCT | 4 cut(s) | 160, 193, 452, 475 |
| AluI | AGCT | 4 cut(s) | 160, 193, 452, 475 |
| AlwI | GGATC | 2 cut(s) | 329, 482 |
| Aor13HI | TCCGGA | 1 cut(s) | 337 |
| ApeKI | GCWGC | 1 cut(s) | 315 |
| ApoI | RAATTY | 4 cut(s) | 11, 71, 103, 438 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 609, 641 |
| AspLEI | GCGC | 1 cut(s) | 447 |
| AspS9I | GGNCC | 1 cut(s) | 111 |
| AsuC2I | CCSGG | 1 cut(s) | 81 |
| AvaII | GGWCC | 1 cut(s) | 111 |
| BanI | GGYRCC | 1 cut(s) | 406 |
| BbvI | GCAGC | 1 cut(s) | 302 |
| BcnI | CCSGG | 1 cut(s) | 81 |
| BfaI | CTAG | 2 cut(s) | 485, 729 |
| BfmI | CTRYAG | 1 cut(s) | 236 |
| BisI | GCNGC | 1 cut(s) | 316 |
| BlsI | GCNGC | 1 cut(s) | 317 |
| BmcAI | AGTACT | 1 cut(s) | 310 |
| Bme1390I | CCNGG | 1 cut(s) | 81 |
| Bme18I | GGWCC | 1 cut(s) | 111 |
| BmgBI | CACGTC | 1 cut(s) | 39 |
| BmgT120I | GGNCC | 1 cut(s) | 111 |
| BmiI | GGNNCC | 2 cut(s) | 34, 408 |
| BmrFI | CCNGG | 1 cut(s) | 81 |
| BmsI | GCATC | 1 cut(s) | 536 |
| BpuEI | CTTGAG | 1 cut(s) | 704 |
| BpuMI | CCSGG | 1 cut(s) | 81 |
| Bsa29I | ATCGAT | 1 cut(s) | 468 |
| BsaAI | YACGTR | 1 cut(s) | 551 |
| BsaJI | CCNNGG | 1 cut(s) | 659 |
| BsaWI | WCCGGW | 1 cut(s) | 337 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 640, 670 |
| Bse1I | ACTGG | 1 cut(s) | 316 |
| BseAI | TCCGGA | 1 cut(s) | 337 |
| BseCI | ATCGAT | 1 cut(s) | 468 |
| BseDI | CCNNGG | 1 cut(s) | 659 |
| BseGI | GGATG | 2 cut(s) | 637, 694 |
| BseNI | ACTGG | 1 cut(s) | 316 |
| BseXI | GCAGC | 1 cut(s) | 302 |
| BshNI | GGYRCC | 1 cut(s) | 406 |
| BshVI | ATCGAT | 1 cut(s) | 468 |
| BsiSI | CCGG | 2 cut(s) | 81, 338 |
| Bsp13I | TCCGGA | 1 cut(s) | 337 |
| Bsp143I | GATC | 2 cut(s) | 334, 487 |
| BspACI | CCGC | 4 cut(s) | 23, 84, 146, 262 |
| BspDI | ATCGAT | 1 cut(s) | 468 |
| BspEI | TCCGGA | 1 cut(s) | 337 |
| BspLI | GGNNCC | 2 cut(s) | 34, 408 |
| BspPI | GGATC | 2 cut(s) | 329, 482 |
| BspT107I | GGYRCC | 1 cut(s) | 406 |
| BsrI | ACTGG | 1 cut(s) | 316 |
| BssECI | CCNNGG | 1 cut(s) | 659 |
| BssMI | GATC | 2 cut(s) | 334, 487 |
| BssT1I | CCWWGG | 1 cut(s) | 659 |
| Bst4CI | ACNGT | 3 cut(s) | 53, 308, 584 |
| BstBAI | YACGTR | 1 cut(s) | 551 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 477, 574 |
| BstF5I | GGATG | 2 cut(s) | 637, 694 |
| BstHHI | GCGC | 1 cut(s) | 447 |
| BstKTI | GATC | 2 cut(s) | 337, 490 |
| BstMBI | GATC | 2 cut(s) | 334, 487 |
| BstNSI | RCATGY | 2 cut(s) | 23, 576 |
| BstSCI | CCNGG | 1 cut(s) | 79 |
| BstSFI | CTRYAG | 1 cut(s) | 236 |
| BstV1I | GCAGC | 1 cut(s) | 302 |
| BstX2I | RGATCY | 1 cut(s) | 487 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 660 |
| BstYI | RGATCY | 1 cut(s) | 487 |
| Bsu15I | ATCGAT | 1 cut(s) | 468 |
| BsuTUI | ATCGAT | 1 cut(s) | 468 |
| BtrI | CACGTC | 1 cut(s) | 39 |
| BtsCI | GGATG | 2 cut(s) | 637, 694 |
| BtsIMutI | CAGTG | 1 cut(s) | 375 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 477, 574 |
| CfoI | GCGC | 1 cut(s) | 447 |
| Cfr13I | GGNCC | 1 cut(s) | 111 |
| ClaI | ATCGAT | 1 cut(s) | 468 |
| CseI | GACGC | 1 cut(s) | 54 |
| Csp6I | GTAC | 5 cut(s) | 133, 143, 309, 565, 664 |
| CviAII | CATG | 3 cut(s) | 20, 149, 573 |
| CviJI | RGCY | 7 cut(s) | 160, 182, 193, 315, 452, 475, 479 |
| CviKI_1 | RGCY | 7 cut(s) | 160, 182, 193, 315, 452, 475, 479 |
| CviQI | GTAC | 5 cut(s) | 133, 143, 309, 565, 664 |
| DpnI | GATC | 2 cut(s) | 336, 489 |
| DpnII | GATC | 2 cut(s) | 334, 487 |
| Eco130I | CCWWGG | 1 cut(s) | 659 |
| Eco47I | GGWCC | 1 cut(s) | 111 |
| EcoT14I | CCWWGG | 1 cut(s) | 659 |
| EcoT22I | ATGCAT | 1 cut(s) | 361 |
| ErhI | CCWWGG | 1 cut(s) | 659 |
| FaeI | CATG | 3 cut(s) | 23, 152, 576 |
| FatI | CATG | 3 cut(s) | 19, 148, 572 |
| FauI | CCCGC | 1 cut(s) | 269 |
| Fnu4HI | GCNGC | 1 cut(s) | 316 |
| FokI | GGATG | 2 cut(s) | 624, 701 |
| Fsp4HI | GCNGC | 1 cut(s) | 316 |
| FspBI | CTAG | 2 cut(s) | 485, 729 |
| FspI | TGCGCA | 1 cut(s) | 446 |
| GlaI | GCGC | 1 cut(s) | 446 |
| GluI | GCNGC | 1 cut(s) | 316 |
| HapII | CCGG | 2 cut(s) | 81, 338 |
| HgaI | GACGC | 1 cut(s) | 54 |
| HhaI | GCGC | 1 cut(s) | 447 |
| Hin1II | CATG | 3 cut(s) | 23, 152, 576 |
| Hin6I | GCGC | 1 cut(s) | 445 |
| HinP1I | GCGC | 1 cut(s) | 445 |
| HincII | GTYRAC | 1 cut(s) | 277 |
| HindII | GTYRAC | 1 cut(s) | 277 |
| HpaII | CCGG | 2 cut(s) | 81, 338 |
| Hpy166II | GTNNAC | 1 cut(s) | 277 |
| Hpy188I | TCNGA | 1 cut(s) | 43 |
| Hpy188III | TCNNGA | 5 cut(s) | 338, 347, 485, 491, 683 |
| Hpy8I | GTNNAC | 1 cut(s) | 277 |
| HpyAV | CCTTC | 2 cut(s) | 23, 193 |
| HpyCH4III | ACNGT | 3 cut(s) | 53, 308, 584 |
| HpyCH4IV | ACGT | 2 cut(s) | 38, 550 |
| HpyCH4V | TGCA | 5 cut(s) | 9, 359, 377, 499, 598 |
| HpySE526I | ACGT | 2 cut(s) | 38, 550 |
| Hsp92II | CATG | 3 cut(s) | 23, 152, 576 |
| HspAI | GCGC | 1 cut(s) | 445 |
| Kpn2I | TCCGGA | 1 cut(s) | 337 |
| Kzo9I | GATC | 2 cut(s) | 334, 487 |
| LpnPI | CCDG | 6 cut(s) | 94, 224, 297, 351, 360, 461 |
| Lsp1109I | GCAGC | 1 cut(s) | 302 |
| LweI | GCATC | 1 cut(s) | 536 |
| MaeI | CTAG | 2 cut(s) | 485, 729 |
| MaeII | ACGT | 2 cut(s) | 38, 550 |
| MaeIII | GTNAC | 1 cut(s) | 551 |
| MalI | GATC | 2 cut(s) | 336, 489 |
| MboI | GATC | 2 cut(s) | 334, 487 |
| MfeI | CAATTG | 1 cut(s) | 612 |
| MflI | RGATCY | 1 cut(s) | 487 |
| MmeI | TCCRAC | 1 cut(s) | 677 |
| MnlI | CCTC | 5 cut(s) | 119, 228, 421, 424, 679 |
| Mph1103I | ATGCAT | 1 cut(s) | 361 |
| MroI | TCCGGA | 1 cut(s) | 337 |
| MseI | TTAA | 2 cut(s) | 15, 461 |
| MslI | CAYNNNNRTG | 2 cut(s) | 504, 517 |
| MspI | CCGG | 2 cut(s) | 81, 338 |
| MspR9I | CCNGG | 1 cut(s) | 81 |
| MunI | CAATTG | 1 cut(s) | 612 |
| NciI | CCSGG | 1 cut(s) | 81 |
| NdeII | GATC | 2 cut(s) | 334, 487 |
| NlaIII | CATG | 3 cut(s) | 23, 152, 576 |
| NlaIV | GGNNCC | 2 cut(s) | 34, 408 |
| NsbI | TGCGCA | 1 cut(s) | 446 |
| NsiI | ATGCAT | 1 cut(s) | 361 |
| NspI | RCATGY | 2 cut(s) | 23, 576 |
| PaeI | GCATGC | 2 cut(s) | 23, 576 |
| PkrI | GCNGC | 1 cut(s) | 317 |
| Ppu21I | YACGTR | 1 cut(s) | 551 |
| PspN4I | GGNNCC | 2 cut(s) | 34, 408 |
| PspPI | GGNCC | 1 cut(s) | 111 |
| PsuI | RGATCY | 1 cut(s) | 487 |
| RsaI | GTAC | 5 cut(s) | 134, 144, 310, 566, 665 |
| RsaNI | GTAC | 5 cut(s) | 133, 143, 309, 565, 664 |
| RseI | CAYNNNNRTG | 2 cut(s) | 504, 517 |
| SaqAI | TTAA | 2 cut(s) | 15, 461 |
| SatI | GCNGC | 1 cut(s) | 316 |
| Sau3AI | GATC | 2 cut(s) | 334, 487 |
| Sau96I | GGNCC | 1 cut(s) | 111 |
| ScaI | AGTACT | 1 cut(s) | 310 |
| ScrFI | CCNGG | 1 cut(s) | 81 |
| SetI | ASST | 8 cut(s) | 34, 41, 162, 195, 435, 454, 477, 553 |
| SfaNI | GCATC | 1 cut(s) | 536 |
| SfcI | CTRYAG | 1 cut(s) | 236 |
| SinI | GGWCC | 1 cut(s) | 111 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 504, 517 |
| SmlI | CTYRAG | 1 cut(s) | 683 |
| SmoI | CTYRAG | 1 cut(s) | 683 |
| SphI | GCATGC | 2 cut(s) | 23, 576 |
| SsiI | CCGC | 4 cut(s) | 23, 84, 146, 262 |
| SspI | AATATT | 1 cut(s) | 402 |
| SspMI | CTAG | 2 cut(s) | 485, 729 |
| StyD4I | CCNGG | 1 cut(s) | 79 |
| StyI | CCWWGG | 1 cut(s) | 659 |
| TaaI | ACNGT | 3 cut(s) | 53, 308, 584 |
| TaiI | ACGT | 2 cut(s) | 41, 553 |
| TaqI | TCGA | 1 cut(s) | 468 |
| TatI | WGTACW | 2 cut(s) | 132, 308 |
| Tru1I | TTAA | 2 cut(s) | 15, 461 |
| Tru9I | TTAA | 2 cut(s) | 15, 461 |
| TscAI | CASTG | 1 cut(s) | 375 |
| TseI | GCWGC | 1 cut(s) | 315 |
| TspDTI | ATGAA | 3 cut(s) | 108, 317, 714 |
| TspRI | CASTG | 1 cut(s) | 375 |
| VpaK11BI | GGWCC | 1 cut(s) | 111 |
| XapI | RAATTY | 4 cut(s) | 11, 71, 103, 438 |
| XbaI | TCTAGA | 1 cut(s) | 484 |
| XceI | RCATGY | 2 cut(s) | 23, 576 |
| XspI | CTAG | 2 cut(s) | 485, 729 |
| ZrmI | AGTACT | 1 cut(s) | 310 |
| Zsp2I | ATGCAT | 1 cut(s) | 361 |