DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 33 |
| AciI | CCGC | 1 cut(s) | 31 |
| AclWI | GGATC | 3 cut(s) | 59, 204, 666 |
| AcsI | RAATTY | 1 cut(s) | 476 |
| AcuI | CTGAAG | 1 cut(s) | 129 |
| AfaI | GTAC | 1 cut(s) | 583 |
| AgeI | ACCGGT | 1 cut(s) | 355 |
| AgsI | TTSAA | 6 cut(s) | 113, 179, 242, 272, 364, 476 |
| AluBI | AGCT | 3 cut(s) | 24, 143, 161 |
| AluI | AGCT | 3 cut(s) | 24, 143, 161 |
| Alw21I | GWGCWC | 2 cut(s) | 496, 561 |
| Alw26I | GTCTC | 1 cut(s) | 298 |
| AlwI | GGATC | 3 cut(s) | 59, 204, 666 |
| AoxI | GGCC | 1 cut(s) | 115 |
| ApeKI | GCWGC | 4 cut(s) | 44, 75, 534, 687 |
| ApoI | RAATTY | 1 cut(s) | 476 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 578, 610 |
| AseI | ATTAAT | 1 cut(s) | 210 |
| AsiGI | ACCGGT | 1 cut(s) | 355 |
| AsuC2I | CCSGG | 1 cut(s) | 80 |
| BbsI | GAAGAC | 2 cut(s) | 509, 601 |
| Bbv12I | GWGCWC | 2 cut(s) | 496, 561 |
| BbvI | GCAGC | 3 cut(s) | 31, 87, 521 |
| BccI | CCATC | 1 cut(s) | 13 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 650, 684 |
| BciVI | GTATCC | 2 cut(s) | 145, 427 |
| BclI | TGATCA | 1 cut(s) | 664 |
| BcnI | CCSGG | 1 cut(s) | 80 |
| BcoDI | GTCTC | 1 cut(s) | 298 |
| BfuI | GTATCC | 2 cut(s) | 145, 427 |
| BisI | GCNGC | 4 cut(s) | 45, 76, 535, 688 |
| BlsI | GCNGC | 4 cut(s) | 46, 77, 536, 689 |
| Bme1390I | CCNGG | 1 cut(s) | 80 |
| BmiI | GGNNCC | 1 cut(s) | 87 |
| BmrFI | CCNGG | 1 cut(s) | 80 |
| BmsI | GCATC | 1 cut(s) | 241 |
| BpiI | GAAGAC | 2 cut(s) | 509, 601 |
| BpmI | CTGGAG | 2 cut(s) | 267, 611 |
| BpuEI | CTTGAG | 2 cut(s) | 106, 643 |
| BpuMI | CCSGG | 1 cut(s) | 80 |
| Bsa29I | ATCGAT | 1 cut(s) | 670 |
| BsaWI | WCCGGW | 1 cut(s) | 355 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 427, 457, 483, 513 |
| Bse118I | RCCGGY | 1 cut(s) | 355 |
| Bse1I | ACTGG | 2 cut(s) | 21, 594 |
| BseCI | ATCGAT | 1 cut(s) | 670 |
| BseMII | CTCAG | 1 cut(s) | 521 |
| BseNI | ACTGG | 2 cut(s) | 21, 594 |
| BseXI | GCAGC | 3 cut(s) | 31, 87, 521 |
| Bsh1285I | CGRYCG | 1 cut(s) | 356 |
| BshFI | GGCC | 1 cut(s) | 117 |
| BshTI | ACCGGT | 1 cut(s) | 355 |
| BshVI | ATCGAT | 1 cut(s) | 670 |
| BsiEI | CGRYCG | 1 cut(s) | 356 |
| BsiHKAI | GWGCWC | 2 cut(s) | 496, 561 |
| BsiSI | CCGG | 2 cut(s) | 80, 356 |
| BsmAI | GTCTC | 1 cut(s) | 298 |
| BsmBI | CGTCTC | 1 cut(s) | 298 |
| BsnI | GGCC | 1 cut(s) | 117 |
| Bsp1286I | GDGCHC | 2 cut(s) | 496, 561 |
| Bsp143I | GATC | 6 cut(s) | 51, 58, 196, 481, 664, 671 |
| BspACI | CCGC | 1 cut(s) | 31 |
| BspANI | GGCC | 1 cut(s) | 117 |
| BspCNI | CTCAG | 1 cut(s) | 520 |
| BspDI | ATCGAT | 1 cut(s) | 670 |
| BspHI | TCATGA | 1 cut(s) | 204 |
| BspLI | GGNNCC | 1 cut(s) | 87 |
| BspPI | GGATC | 3 cut(s) | 59, 204, 666 |
| BsrBI | CCGCTC | 1 cut(s) | 33 |
| BsrFI | RCCGGY | 1 cut(s) | 355 |
| BsrI | ACTGG | 2 cut(s) | 21, 594 |
| BssAI | RCCGGY | 1 cut(s) | 355 |
| BssMI | GATC | 6 cut(s) | 51, 58, 196, 481, 664, 671 |
| Bst4CI | ACNGT | 2 cut(s) | 456, 581 |
| BstC8I | GCNNGC | 1 cut(s) | 22 |
| BstDEI | CTNAG | 1 cut(s) | 507 |
| BstKTI | GATC | 6 cut(s) | 54, 61, 199, 484, 667, 674 |
| BstMAI | GTCTC | 1 cut(s) | 298 |
| BstMBI | GATC | 6 cut(s) | 51, 58, 196, 481, 664, 671 |
| BstMCI | CGRYCG | 1 cut(s) | 356 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 30, 260 |
| BstSCI | CCNGG | 1 cut(s) | 78 |
| BstV1I | GCAGC | 3 cut(s) | 31, 87, 521 |
| BstV2I | GAAGAC | 2 cut(s) | 509, 601 |
| BstX2I | RGATCY | 1 cut(s) | 51 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 304 |
| BstYI | RGATCY | 1 cut(s) | 51 |
| Bsu15I | ATCGAT | 1 cut(s) | 670 |
| BsuI | GTATCC | 2 cut(s) | 145, 427 |
| BsuRI | GGCC | 1 cut(s) | 117 |
| BsuTUI | ATCGAT | 1 cut(s) | 670 |
| BtsIMutI | CAGTG | 1 cut(s) | 14 |
| Cac8I | GCNNGC | 1 cut(s) | 22 |
| CciI | TCATGA | 1 cut(s) | 204 |
| Cfr10I | RCCGGY | 1 cut(s) | 355 |
| ClaI | ATCGAT | 1 cut(s) | 670 |
| Csp6I | GTAC | 1 cut(s) | 582 |
| CspAI | ACCGGT | 1 cut(s) | 355 |
| CviAII | CATG | 4 cut(s) | 48, 205, 467, 662 |
| CviJI | RGCY | 7 cut(s) | 24, 78, 86, 117, 143, 161, 534 |
| CviKI_1 | RGCY | 7 cut(s) | 24, 78, 86, 117, 143, 161, 534 |
| CviQI | GTAC | 1 cut(s) | 582 |
| DdeI | CTNAG | 1 cut(s) | 507 |
| DpnI | GATC | 6 cut(s) | 53, 60, 198, 483, 666, 673 |
| DpnII | GATC | 6 cut(s) | 51, 58, 196, 481, 664, 671 |
| Eco147I | AGGCCT | 1 cut(s) | 117 |
| Eco57I | CTGAAG | 1 cut(s) | 129 |
| EcoRI | GAATTC | 1 cut(s) | 476 |
| Esp3I | CGTCTC | 1 cut(s) | 298 |
| FaeI | CATG | 4 cut(s) | 51, 208, 470, 665 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 422, 454 |
| FatI | CATG | 4 cut(s) | 47, 204, 466, 661 |
| FbaI | TGATCA | 1 cut(s) | 664 |
| Fnu4HI | GCNGC | 4 cut(s) | 45, 76, 535, 688 |
| Fsp4HI | GCNGC | 4 cut(s) | 45, 76, 535, 688 |
| GluI | GCNGC | 4 cut(s) | 45, 76, 535, 688 |
| GsuI | CTGGAG | 2 cut(s) | 267, 611 |
| HaeIII | GGCC | 1 cut(s) | 117 |
| HapII | CCGG | 2 cut(s) | 80, 356 |
| Hin1II | CATG | 4 cut(s) | 51, 208, 470, 665 |
| HincII | GTYRAC | 1 cut(s) | 226 |
| HindII | GTYRAC | 1 cut(s) | 226 |
| HinfI | GANTC | 6 cut(s) | 188, 275, 407, 505, 593, 631 |
| HpaI | GTTAAC | 1 cut(s) | 226 |
| HpaII | CCGG | 2 cut(s) | 80, 356 |
| Hpy166II | GTNNAC | 1 cut(s) | 226 |
| Hpy188I | TCNGA | 4 cut(s) | 63, 148, 280, 491 |
| Hpy188III | TCNNGA | 5 cut(s) | 138, 205, 246, 473, 509 |
| Hpy8I | GTNNAC | 1 cut(s) | 226 |
| Hpy99I | CGWCG | 1 cut(s) | 40 |
| HpyAV | CCTTC | 4 cut(s) | 107, 302, 448, 568 |
| HpyCH4III | ACNGT | 2 cut(s) | 456, 581 |
| HpyCH4IV | ACGT | 2 cut(s) | 222, 291 |
| HpyCH4V | TGCA | 4 cut(s) | 47, 254, 537, 661 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 30, 260 |
| HpyF3I | CTNAG | 1 cut(s) | 507 |
| HpySE526I | ACGT | 2 cut(s) | 222, 291 |
| Hsp92II | CATG | 4 cut(s) | 51, 208, 470, 665 |
| Ksp22I | TGATCA | 1 cut(s) | 664 |
| KspAI | GTTAAC | 1 cut(s) | 226 |
| Kzo9I | GATC | 6 cut(s) | 51, 58, 196, 481, 664, 671 |
| LmnI | GCTCC | 2 cut(s) | 91, 491 |
| Lsp1109I | GCAGC | 3 cut(s) | 31, 87, 521 |
| LweI | GCATC | 1 cut(s) | 241 |
| MaeII | ACGT | 2 cut(s) | 222, 291 |
| MaeIII | GTNAC | 2 cut(s) | 214, 632 |
| MalI | GATC | 6 cut(s) | 53, 60, 198, 483, 666, 673 |
| MbiI | CCGCTC | 1 cut(s) | 33 |
| MboI | GATC | 6 cut(s) | 51, 58, 196, 481, 664, 671 |
| MboII | GAAGA | 5 cut(s) | 46, 163, 284, 514, 601 |
| MflI | RGATCY | 1 cut(s) | 51 |
| MhlI | GDGCHC | 2 cut(s) | 496, 561 |
| MluCI | AATT | 4 cut(s) | 165, 255, 476, 680 |
| MlyI | GAGTC | 3 cut(s) | 499, 602, 640 |
| MnlI | CCTC | 5 cut(s) | 21, 76, 128, 379, 453 |
| MseI | TTAA | 3 cut(s) | 210, 225, 567 |
| MspI | CCGG | 2 cut(s) | 80, 356 |
| MspR9I | CCNGG | 1 cut(s) | 80 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 30, 260 |
| NciI | CCSGG | 1 cut(s) | 80 |
| NdeII | GATC | 6 cut(s) | 51, 58, 196, 481, 664, 671 |
| NlaIII | CATG | 4 cut(s) | 51, 208, 470, 665 |
| NlaIV | GGNNCC | 1 cut(s) | 87 |
| NmuCI | GTSAC | 1 cut(s) | 632 |
| PagI | TCATGA | 1 cut(s) | 204 |
| PceI | AGGCCT | 1 cut(s) | 117 |
| PfeI | GAWTC | 3 cut(s) | 188, 275, 407 |
| PinAI | ACCGGT | 1 cut(s) | 355 |
| PkrI | GCNGC | 4 cut(s) | 46, 77, 536, 689 |
| PleI | GAGTC | 3 cut(s) | 499, 601, 639 |
| PpsI | GAGTC | 3 cut(s) | 499, 601, 639 |
| PshBI | ATTAAT | 1 cut(s) | 210 |
| PspN4I | GGNNCC | 1 cut(s) | 87 |
| PsuI | RGATCY | 1 cut(s) | 51 |
| RsaI | GTAC | 1 cut(s) | 583 |
| RsaNI | GTAC | 1 cut(s) | 582 |
| SaqAI | TTAA | 3 cut(s) | 210, 225, 567 |
| SatI | GCNGC | 4 cut(s) | 45, 76, 535, 688 |
| Sau3AI | GATC | 6 cut(s) | 51, 58, 196, 481, 664, 671 |
| SchI | GAGTC | 3 cut(s) | 499, 602, 640 |
| ScrFI | CCNGG | 1 cut(s) | 80 |
| SduI | GDGCHC | 2 cut(s) | 496, 561 |
| SetI | ASST | 7 cut(s) | 26, 145, 163, 225, 294, 426, 440 |
| SfaNI | GCATC | 1 cut(s) | 241 |
| SmlI | CTYRAG | 2 cut(s) | 121, 622 |
| SmoI | CTYRAG | 2 cut(s) | 121, 622 |
| Sse9I | AATT | 4 cut(s) | 165, 255, 476, 680 |
| SseBI | AGGCCT | 1 cut(s) | 117 |
| SsiI | CCGC | 1 cut(s) | 31 |
| StuI | AGGCCT | 1 cut(s) | 117 |
| StyD4I | CCNGG | 1 cut(s) | 78 |
| TaaI | ACNGT | 2 cut(s) | 456, 581 |
| TaiI | ACGT | 2 cut(s) | 225, 294 |
| TaqI | TCGA | 5 cut(s) | 38, 57, 402, 480, 670 |
| TasI | AATT | 4 cut(s) | 165, 255, 476, 680 |
| TatI | WGTACW | 1 cut(s) | 581 |
| TfiI | GAWTC | 3 cut(s) | 188, 275, 407 |
| Tru1I | TTAA | 3 cut(s) | 210, 225, 567 |
| Tru9I | TTAA | 3 cut(s) | 210, 225, 567 |
| TscAI | CASTG | 1 cut(s) | 21 |
| TseFI | GTSAC | 1 cut(s) | 632 |
| TseI | GCWGC | 4 cut(s) | 44, 75, 534, 687 |
| Tsp45I | GTSAC | 1 cut(s) | 632 |
| TspDTI | ATGAA | 3 cut(s) | 420, 455, 601 |
| TspGWI | ACGGA | 1 cut(s) | 386 |
| TspRI | CASTG | 1 cut(s) | 21 |
| VspI | ATTAAT | 1 cut(s) | 210 |
| XapI | RAATTY | 1 cut(s) | 476 |