DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| REPA_OB_2 | PF16900 | 9 - 67 | 2.9e-06 | Replication protein A OB domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 308 |
| AcsI | RAATTY | 1 cut(s) | 350 |
| AfaI | GTAC | 3 cut(s) | 33, 100, 390 |
| AgsI | TTSAA | 2 cut(s) | 350, 397 |
| AjnI | CCWGG | 1 cut(s) | 361 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 151, 183 |
| Alw21I | GWGCWC | 2 cut(s) | 13, 231 |
| Alw26I | GTCTC | 1 cut(s) | 352 |
| AlwI | GGATC | 1 cut(s) | 308 |
| ApeKI | GCWGC | 3 cut(s) | 51, 179, 329 |
| ApoI | RAATTY | 1 cut(s) | 350 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 95, 127 |
| AspS9I | GGNCC | 1 cut(s) | 463 |
| AsuHPI | GGTGA | 1 cut(s) | 154 |
| AvaII | GGWCC | 1 cut(s) | 463 |
| BbsI | GAAGAC | 1 cut(s) | 118 |
| Bbv12I | GWGCWC | 2 cut(s) | 13, 231 |
| BbvI | GCAGC | 3 cut(s) | 38, 166, 341 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 292, 326 |
| BciT130I | CCWGG | 1 cut(s) | 363 |
| BciVI | GTATCC | 1 cut(s) | 485 |
| BclI | TGATCA | 1 cut(s) | 306 |
| BcoDI | GTCTC | 1 cut(s) | 352 |
| BfaI | CTAG | 1 cut(s) | 183 |
| BfuI | GTATCC | 1 cut(s) | 485 |
| BisI | GCNGC | 3 cut(s) | 52, 180, 330 |
| BlsI | GCNGC | 3 cut(s) | 53, 181, 331 |
| BmcAI | AGTACT | 1 cut(s) | 33 |
| Bme1390I | CCNGG | 1 cut(s) | 363 |
| Bme18I | GGWCC | 1 cut(s) | 463 |
| BmgT120I | GGNCC | 1 cut(s) | 463 |
| BmiI | GGNNCC | 1 cut(s) | 465 |
| BmrFI | CCNGG | 1 cut(s) | 363 |
| BmsI | GCATC | 1 cut(s) | 85 |
| BpiI | GAAGAC | 1 cut(s) | 118 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 202, 234 |
| BpmI | CTGGAG | 2 cut(s) | 128, 287 |
| BpuEI | CTTGAG | 2 cut(s) | 9, 160 |
| Bsa29I | ATCGAT | 2 cut(s) | 62, 312 |
| BsaAI | YACGTR | 1 cut(s) | 478 |
| BsaI | GGTCTC | 1 cut(s) | 352 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 30 |
| Bse1I | ACTGG | 3 cut(s) | 111, 224, 465 |
| BseBI | CCWGG | 1 cut(s) | 363 |
| BseCI | ATCGAT | 2 cut(s) | 62, 312 |
| BseNI | ACTGG | 3 cut(s) | 111, 224, 465 |
| BseRI | GAGGAG | 1 cut(s) | 157 |
| BseXI | GCAGC | 3 cut(s) | 38, 166, 341 |
| BshVI | ATCGAT | 2 cut(s) | 62, 312 |
| BsiHKAI | GWGCWC | 2 cut(s) | 13, 231 |
| BsmAI | GTCTC | 1 cut(s) | 352 |
| Bso31I | GGTCTC | 1 cut(s) | 352 |
| Bsp1286I | GDGCHC | 2 cut(s) | 13, 231 |
| Bsp143I | GATC | 3 cut(s) | 306, 313, 448 |
| BspDI | ATCGAT | 2 cut(s) | 62, 312 |
| BspLI | GGNNCC | 1 cut(s) | 465 |
| BspPI | GGATC | 1 cut(s) | 308 |
| BspTNI | GGTCTC | 1 cut(s) | 352 |
| BsrI | ACTGG | 3 cut(s) | 111, 224, 465 |
| BssMI | GATC | 3 cut(s) | 306, 313, 448 |
| Bst2UI | CCWGG | 1 cut(s) | 363 |
| Bst4CI | ACNGT | 2 cut(s) | 98, 189 |
| Bst6I | CTCTTC | 1 cut(s) | 203 |
| BstBAI | YACGTR | 1 cut(s) | 478 |
| BstKTI | GATC | 3 cut(s) | 309, 316, 451 |
| BstMAI | GTCTC | 1 cut(s) | 352 |
| BstMBI | GATC | 3 cut(s) | 306, 313, 448 |
| BstNI | CCWGG | 1 cut(s) | 363 |
| BstSCI | CCNGG | 1 cut(s) | 361 |
| BstV1I | GCAGC | 3 cut(s) | 38, 166, 341 |
| BstV2I | GAAGAC | 1 cut(s) | 118 |
| Bsu15I | ATCGAT | 2 cut(s) | 62, 312 |
| BsuI | GTATCC | 1 cut(s) | 485 |
| BsuTUI | ATCGAT | 2 cut(s) | 62, 312 |
| BtsIMutI | CAGTG | 1 cut(s) | 231 |
| Cfr13I | GGNCC | 1 cut(s) | 463 |
| ClaI | ATCGAT | 2 cut(s) | 62, 312 |
| Csp6I | GTAC | 3 cut(s) | 32, 99, 389 |
| CviAII | CATG | 2 cut(s) | 176, 304 |
| CviJI | RGCY | 1 cut(s) | 51 |
| CviKI_1 | RGCY | 1 cut(s) | 51 |
| CviQI | GTAC | 3 cut(s) | 32, 99, 389 |
| DpnI | GATC | 3 cut(s) | 308, 315, 450 |
| DpnII | GATC | 3 cut(s) | 306, 313, 448 |
| Eam1104I | CTCTTC | 1 cut(s) | 203 |
| EarI | CTCTTC | 1 cut(s) | 203 |
| Eco31I | GGTCTC | 1 cut(s) | 352 |
| Eco47I | GGWCC | 1 cut(s) | 463 |
| EcoRII | CCWGG | 1 cut(s) | 361 |
| FaeI | CATG | 2 cut(s) | 179, 307 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 18, 50 |
| FatI | CATG | 2 cut(s) | 175, 303 |
| FbaI | TGATCA | 1 cut(s) | 306 |
| Fnu4HI | GCNGC | 3 cut(s) | 52, 180, 330 |
| Fsp4HI | GCNGC | 3 cut(s) | 52, 180, 330 |
| FspBI | CTAG | 1 cut(s) | 183 |
| GluI | GCNGC | 3 cut(s) | 52, 180, 330 |
| GsuI | CTGGAG | 2 cut(s) | 128, 287 |
| Hin1II | CATG | 2 cut(s) | 179, 307 |
| HinfI | GANTC | 4 cut(s) | 64, 110, 159, 470 |
| HphI | GGTGA | 1 cut(s) | 154 |
| Hpy166II | GTNNAC | 1 cut(s) | 19 |
| Hpy188I | TCNGA | 1 cut(s) | 453 |
| Hpy188III | TCNNGA | 4 cut(s) | 26, 266, 357, 376 |
| Hpy8I | GTNNAC | 1 cut(s) | 19 |
| HpyAV | CCTTC | 1 cut(s) | 85 |
| HpyCH4III | ACNGT | 2 cut(s) | 98, 189 |
| HpyCH4IV | ACGT | 1 cut(s) | 477 |
| HpyCH4V | TGCA | 2 cut(s) | 54, 303 |
| HpySE526I | ACGT | 1 cut(s) | 477 |
| Hsp92II | CATG | 2 cut(s) | 179, 307 |
| Ksp22I | TGATCA | 1 cut(s) | 306 |
| Kzo9I | GATC | 3 cut(s) | 306, 313, 448 |
| LmnI | GCTCC | 2 cut(s) | 8, 268 |
| LpnPI | CCDG | 9 cut(s) | 84, 92, 237, 251, 348, 375, 399, 446, 480 |
| Lsp1109I | GCAGC | 3 cut(s) | 38, 166, 341 |
| LweI | GCATC | 1 cut(s) | 85 |
| MaeI | CTAG | 1 cut(s) | 183 |
| MaeII | ACGT | 1 cut(s) | 477 |
| MaeIII | GTNAC | 2 cut(s) | 274, 509 |
| MalI | GATC | 3 cut(s) | 308, 315, 450 |
| MboI | GATC | 3 cut(s) | 306, 313, 448 |
| MboII | GAAGA | 3 cut(s) | 118, 220, 425 |
| MhlI | GDGCHC | 2 cut(s) | 13, 231 |
| MluCI | AATT | 4 cut(s) | 322, 350, 416, 498 |
| MlyI | GAGTC | 1 cut(s) | 119 |
| MnlI | CCTC | 2 cut(s) | 135, 142 |
| MseI | TTAA | 4 cut(s) | 84, 155, 248, 419 |
| MspR9I | CCNGG | 1 cut(s) | 363 |
| MvaI | CCWGG | 1 cut(s) | 363 |
| NdeII | GATC | 3 cut(s) | 306, 313, 448 |
| NlaIII | CATG | 2 cut(s) | 179, 307 |
| NlaIV | GGNNCC | 1 cut(s) | 465 |
| NmuCI | GTSAC | 2 cut(s) | 274, 509 |
| PfeI | GAWTC | 3 cut(s) | 64, 159, 470 |
| PkrI | GCNGC | 3 cut(s) | 53, 181, 331 |
| PleI | GAGTC | 1 cut(s) | 118 |
| PpsI | GAGTC | 1 cut(s) | 118 |
| Ppu21I | YACGTR | 1 cut(s) | 478 |
| Psp6I | CCWGG | 1 cut(s) | 361 |
| PspGI | CCWGG | 1 cut(s) | 361 |
| PspN4I | GGNNCC | 1 cut(s) | 465 |
| PspPI | GGNCC | 1 cut(s) | 463 |
| RsaI | GTAC | 3 cut(s) | 33, 100, 390 |
| RsaNI | GTAC | 3 cut(s) | 32, 99, 389 |
| SaqAI | TTAA | 4 cut(s) | 84, 155, 248, 419 |
| SatI | GCNGC | 3 cut(s) | 52, 180, 330 |
| Sau3AI | GATC | 3 cut(s) | 306, 313, 448 |
| Sau96I | GGNCC | 1 cut(s) | 463 |
| ScaI | AGTACT | 1 cut(s) | 33 |
| SchI | GAGTC | 1 cut(s) | 119 |
| ScrFI | CCNGG | 1 cut(s) | 363 |
| SduI | GDGCHC | 2 cut(s) | 13, 231 |
| SetI | ASST | 4 cut(s) | 167, 364, 480, 487 |
| SfaNI | GCATC | 1 cut(s) | 85 |
| SinI | GGWCC | 1 cut(s) | 463 |
| SmlI | CTYRAG | 2 cut(s) | 24, 139 |
| SmoI | CTYRAG | 2 cut(s) | 24, 139 |
| Sse9I | AATT | 4 cut(s) | 322, 350, 416, 498 |
| SspMI | CTAG | 1 cut(s) | 183 |
| StyD4I | CCNGG | 1 cut(s) | 361 |
| TaaI | ACNGT | 2 cut(s) | 98, 189 |
| TaiI | ACGT | 1 cut(s) | 480 |
| TaqI | TCGA | 4 cut(s) | 62, 231, 312, 356 |
| TaqII | GACCGA | 1 cut(s) | 430 |
| TasI | AATT | 4 cut(s) | 322, 350, 416, 498 |
| TatI | WGTACW | 1 cut(s) | 31 |
| TfiI | GAWTC | 3 cut(s) | 64, 159, 470 |
| Tru1I | TTAA | 4 cut(s) | 84, 155, 248, 419 |
| Tru9I | TTAA | 4 cut(s) | 84, 155, 248, 419 |
| TscAI | CASTG | 1 cut(s) | 231 |
| TseFI | GTSAC | 2 cut(s) | 274, 509 |
| TseI | GCWGC | 3 cut(s) | 51, 179, 329 |
| Tsp45I | GTSAC | 2 cut(s) | 274, 509 |
| TspDTI | ATGAA | 2 cut(s) | 118, 462 |
| TspRI | CASTG | 1 cut(s) | 231 |
| VpaK11BI | GGWCC | 1 cut(s) | 463 |
| XapI | RAATTY | 1 cut(s) | 350 |
| XspI | CTAG | 1 cut(s) | 183 |
| ZrmI | AGTACT | 1 cut(s) | 33 |