U-box domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| REPA_OB_2 | PF16900 | 33 - 119 | 9.8e-07 | Replication protein A OB domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 140 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 170, 380 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 76 |
| AciI | CCGC | 1 cut(s) | 119 |
| AcoI | YGGCCR | 1 cut(s) | 333 |
| AcuI | CTGAAG | 2 cut(s) | 117, 272 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 38, 76, 176, 470 |
| AgsI | TTSAA | 2 cut(s) | 161, 327 |
| AjnI | CCWGG | 1 cut(s) | 31 |
| AluBI | AGCT | 6 cut(s) | 89, 232, 305, 369, 378, 468 |
| AluI | AGCT | 6 cut(s) | 89, 232, 305, 369, 378, 468 |
| AoxI | GGCC | 2 cut(s) | 333, 472 |
| AseI | ATTAAT | 1 cut(s) | 458 |
| AsuC2I | CCSGG | 1 cut(s) | 13 |
| AsuHPI | GGTGA | 1 cut(s) | 71 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 275, 308 |
| BalI | TGGCCA | 1 cut(s) | 335 |
| BbsI | GAAGAC | 1 cut(s) | 376 |
| BccI | CCATC | 1 cut(s) | 74 |
| BceAI | ACGGC | 1 cut(s) | 59 |
| BciT130I | CCWGG | 1 cut(s) | 33 |
| BcnI | CCSGG | 1 cut(s) | 13 |
| Bme1390I | CCNGG | 2 cut(s) | 13, 33 |
| BmrFI | CCNGG | 2 cut(s) | 13, 33 |
| BmsI | GCATC | 4 cut(s) | 138, 160, 262, 532 |
| BpiI | GAAGAC | 1 cut(s) | 376 |
| BpmI | CTGGAG | 1 cut(s) | 285 |
| Bpu10I | CCTNAGC | 1 cut(s) | 469 |
| BpuEI | CTTGAG | 2 cut(s) | 127, 418 |
| BpuMI | CCSGG | 1 cut(s) | 13 |
| BsaJI | CCNNGG | 1 cut(s) | 75 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 38, 76, 176, 470 |
| BseBI | CCWGG | 1 cut(s) | 33 |
| BseDI | CCNNGG | 1 cut(s) | 75 |
| BseGI | GGATG | 2 cut(s) | 66, 547 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 38, 76, 176, 470 |
| BseMII | CTCAG | 2 cut(s) | 396, 483 |
| BshFI | GGCC | 2 cut(s) | 335, 474 |
| BsiSI | CCGG | 1 cut(s) | 13 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 38, 76, 176, 470 |
| BsnI | GGCC | 2 cut(s) | 335, 474 |
| BspACI | CCGC | 1 cut(s) | 119 |
| BspANI | GGCC | 2 cut(s) | 335, 474 |
| BspCNI | CTCAG | 2 cut(s) | 397, 482 |
| BspHI | TCATGA | 1 cut(s) | 19 |
| BspQI | GCTCTTC | 1 cut(s) | 222 |
| BssECI | CCNNGG | 1 cut(s) | 75 |
| Bst2UI | CCWGG | 1 cut(s) | 33 |
| Bst6I | CTCTTC | 1 cut(s) | 222 |
| BstDEI | CTNAG | 2 cut(s) | 405, 469 |
| BstDSI | CCRYGG | 1 cut(s) | 75 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 174 |
| BstF5I | GGATG | 2 cut(s) | 66, 547 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 341, 375 |
| BstNI | CCWGG | 1 cut(s) | 33 |
| BstSCI | CCNGG | 2 cut(s) | 11, 31 |
| BstV2I | GAAGAC | 1 cut(s) | 376 |
| BsuRI | GGCC | 2 cut(s) | 335, 474 |
| BtgI | CCRYGG | 1 cut(s) | 75 |
| BtsCI | GGATG | 2 cut(s) | 66, 547 |
| BtsIMutI | CAGTG | 1 cut(s) | 93 |
| CciI | TCATGA | 1 cut(s) | 19 |
| CviAII | CATG | 3 cut(s) | 20, 71, 82 |
| DdeI | CTNAG | 2 cut(s) | 405, 469 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 170, 380 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 170, 380 |
| EaeI | YGGCCR | 1 cut(s) | 333 |
| Eam1104I | CTCTTC | 1 cut(s) | 222 |
| EarI | CTCTTC | 1 cut(s) | 222 |
| EciI | GGCGGA | 1 cut(s) | 134 |
| Eco57I | CTGAAG | 2 cut(s) | 117, 272 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 174 |
| EcoRII | CCWGG | 1 cut(s) | 31 |
| EcoT22I | ATGCAT | 1 cut(s) | 153 |
| FaeI | CATG | 3 cut(s) | 23, 74, 85 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 228, 260 |
| FatI | CATG | 3 cut(s) | 19, 70, 81 |
| FauNDI | CATATG | 1 cut(s) | 340 |
| FokI | GGATG | 2 cut(s) | 53, 554 |
| GsuI | CTGGAG | 1 cut(s) | 285 |
| HaeIII | GGCC | 2 cut(s) | 335, 474 |
| HapII | CCGG | 1 cut(s) | 13 |
| Hin1II | CATG | 3 cut(s) | 23, 74, 85 |
| HincII | GTYRAC | 2 cut(s) | 6, 361 |
| HindII | GTYRAC | 2 cut(s) | 6, 361 |
| HindIII | AAGCTT | 1 cut(s) | 367 |
| HinfI | GANTC | 2 cut(s) | 16, 62 |
| HpaI | GTTAAC | 2 cut(s) | 6, 361 |
| HpaII | CCGG | 1 cut(s) | 13 |
| HphI | GGTGA | 1 cut(s) | 71 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 361 |
| Hpy188I | TCNGA | 1 cut(s) | 176 |
| Hpy188III | TCNNGA | 4 cut(s) | 20, 106, 161, 404 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 361 |
| HpyCH4V | TGCA | 4 cut(s) | 151, 275, 344, 545 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 341, 375 |
| HpyF3I | CTNAG | 2 cut(s) | 405, 469 |
| Hsp92II | CATG | 3 cut(s) | 23, 74, 85 |
| KspAI | GTTAAC | 2 cut(s) | 6, 361 |
| LguI | GCTCTTC | 1 cut(s) | 222 |
| LweI | GCATC | 4 cut(s) | 138, 160, 262, 532 |
| MaeIII | GTNAC | 3 cut(s) | 59, 291, 408 |
| MboII | GAAGA | 6 cut(s) | 110, 134, 239, 292, 376, 480 |
| MfeI | CAATTG | 1 cut(s) | 182 |
| MlsI | TGGCCA | 1 cut(s) | 335 |
| MluCI | AATT | 2 cut(s) | 182, 455 |
| MluNI | TGGCCA | 1 cut(s) | 335 |
| MlyI | GAGTC | 1 cut(s) | 56 |
| MnlI | CCTC | 3 cut(s) | 170, 309, 539 |
| Mox20I | TGGCCA | 1 cut(s) | 335 |
| Mph1103I | ATGCAT | 1 cut(s) | 153 |
| MscI | TGGCCA | 1 cut(s) | 335 |
| MseI | TTAA | 3 cut(s) | 5, 360, 458 |
| Msp20I | TGGCCA | 1 cut(s) | 335 |
| MspA1I | CMGCKG | 2 cut(s) | 305, 378 |
| MspI | CCGG | 1 cut(s) | 13 |
| MspR9I | CCNGG | 2 cut(s) | 13, 33 |
| MunI | CAATTG | 1 cut(s) | 182 |
| MvaI | CCWGG | 1 cut(s) | 33 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 341, 375 |
| NciI | CCSGG | 1 cut(s) | 13 |
| NdeI | CATATG | 1 cut(s) | 340 |
| NlaIII | CATG | 3 cut(s) | 23, 74, 85 |
| NmuCI | GTSAC | 1 cut(s) | 59 |
| NsiI | ATGCAT | 1 cut(s) | 153 |
| PagI | TCATGA | 1 cut(s) | 19 |
| PciSI | GCTCTTC | 1 cut(s) | 222 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 202 |
| PfeI | GAWTC | 1 cut(s) | 16 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 76 |
| PfoI | TCCNGGA | 2 cut(s) | 11, 31 |
| PleI | GAGTC | 1 cut(s) | 56 |
| PpsI | GAGTC | 1 cut(s) | 56 |
| PshBI | ATTAAT | 1 cut(s) | 458 |
| PsiI | TTATAA | 1 cut(s) | 140 |
| Psp6I | CCWGG | 1 cut(s) | 31 |
| PspGI | CCWGG | 1 cut(s) | 31 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 192, 224 |
| PvuII | CAGCTG | 2 cut(s) | 305, 378 |
| SapI | GCTCTTC | 1 cut(s) | 222 |
| SaqAI | TTAA | 3 cut(s) | 5, 360, 458 |
| SchI | GAGTC | 1 cut(s) | 56 |
| ScrFI | CCNGG | 2 cut(s) | 13, 33 |
| SfaNI | GCATC | 4 cut(s) | 138, 160, 262, 532 |
| SmlI | CTYRAG | 2 cut(s) | 106, 433 |
| SmoI | CTYRAG | 2 cut(s) | 106, 433 |
| Sse9I | AATT | 2 cut(s) | 182, 455 |
| SsiI | CCGC | 1 cut(s) | 119 |
| SspI | AATATT | 1 cut(s) | 400 |
| StyD4I | CCNGG | 2 cut(s) | 11, 31 |
| TasI | AATT | 2 cut(s) | 182, 455 |
| TfiI | GAWTC | 1 cut(s) | 16 |
| Tru1I | TTAA | 3 cut(s) | 5, 360, 458 |
| Tru9I | TTAA | 3 cut(s) | 5, 360, 458 |
| TscAI | CASTG | 1 cut(s) | 100 |
| TseFI | GTSAC | 1 cut(s) | 59 |
| Tsp45I | GTSAC | 1 cut(s) | 59 |
| TspDTI | ATGAA | 4 cut(s) | 8, 240, 376, 564 |
| TspRI | CASTG | 1 cut(s) | 100 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 76 |
| VspI | ATTAAT | 1 cut(s) | 458 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 174 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 73 |
| Zsp2I | ATGCAT | 1 cut(s) | 153 |