U-box domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| REPA_OB_2 | PF16900 | 57 - 148 | 9.4e-07 | Replication protein A OB domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 576 |
| AcsI | RAATTY | 8 cut(s) | 69, 83, 114, 395, 408, 485, 646, 655 |
| AfaI | GTAC | 1 cut(s) | 551 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 226, 280 |
| AgsI | TTSAA | 8 cut(s) | 83, 119, 257, 344, 401, 413, 651, 672 |
| AluBI | AGCT | 3 cut(s) | 42, 253, 482 |
| AluI | AGCT | 3 cut(s) | 42, 253, 482 |
| Alw26I | GTCTC | 1 cut(s) | 495 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 521 |
| ApoI | RAATTY | 8 cut(s) | 69, 83, 114, 395, 408, 485, 646, 655 |
| AseI | ATTAAT | 1 cut(s) | 98 |
| AsuHPI | GGTGA | 1 cut(s) | 289 |
| AxyI | CCTNAGG | 1 cut(s) | 275 |
| BccI | CCATC | 2 cut(s) | 235, 573 |
| BclI | TGATCA | 1 cut(s) | 372 |
| BcoDI | GTCTC | 1 cut(s) | 495 |
| BfaI | CTAG | 1 cut(s) | 173 |
| BglII | AGATCT | 1 cut(s) | 286 |
| BmsI | GCATC | 2 cut(s) | 356, 425 |
| BpmI | CTGGAG | 1 cut(s) | 189 |
| BsaBI | GATNNNNATC | 1 cut(s) | 698 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 492, 522 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 226, 280 |
| Bse21I | CCTNAGG | 1 cut(s) | 275 |
| Bse3DI | GCAATG | 1 cut(s) | 696 |
| Bse8I | GATNNNNATC | 1 cut(s) | 698 |
| BseGI | GGATG | 1 cut(s) | 246 |
| BseJI | GATNNNNATC | 1 cut(s) | 698 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 226, 280 |
| BseMI | GCAATG | 1 cut(s) | 696 |
| BseMII | CTCAG | 1 cut(s) | 266 |
| BseRI | GAGGAG | 1 cut(s) | 292 |
| BslFI | GGGAC | 1 cut(s) | 203 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 226, 280 |
| BsmAI | GTCTC | 1 cut(s) | 495 |
| BsmFI | GGGAC | 1 cut(s) | 203 |
| Bsp1407I | TGTACA | 1 cut(s) | 549 |
| Bsp143I | GATC | 3 cut(s) | 21, 286, 372 |
| BspCNI | CTCAG | 1 cut(s) | 267 |
| BsrDI | GCAATG | 1 cut(s) | 696 |
| BsrGI | TGTACA | 1 cut(s) | 549 |
| BssMI | GATC | 3 cut(s) | 21, 286, 372 |
| Bst4CI | ACNGT | 2 cut(s) | 107, 517 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 56, 636 |
| BstAUI | TGTACA | 1 cut(s) | 549 |
| BstC8I | GCNNGC | 2 cut(s) | 34, 586 |
| BstDEI | CTNAG | 1 cut(s) | 275 |
| BstF5I | GGATG | 1 cut(s) | 246 |
| BstKTI | GATC | 3 cut(s) | 24, 289, 375 |
| BstMAI | GTCTC | 1 cut(s) | 495 |
| BstMBI | GATC | 3 cut(s) | 21, 286, 372 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 590, 636 |
| BstNSI | RCATGY | 2 cut(s) | 32, 588 |
| BstX2I | RGATCY | 1 cut(s) | 286 |
| BstYI | RGATCY | 1 cut(s) | 286 |
| Bsu36I | CCTNAGG | 1 cut(s) | 275 |
| BtsCI | GGATG | 1 cut(s) | 246 |
| BtsI | GCAGTG | 1 cut(s) | 54 |
| BtsIMutI | CAGTG | 2 cut(s) | 54, 103 |
| Cac8I | GCNNGC | 2 cut(s) | 34, 586 |
| CaiI | CAGNNNCTG | 1 cut(s) | 521 |
| CseI | GACGC | 1 cut(s) | 590 |
| Csp6I | GTAC | 1 cut(s) | 550 |
| CviAII | CATG | 3 cut(s) | 29, 585, 720 |
| CviJI | RGCY | 5 cut(s) | 42, 200, 253, 482, 593 |
| CviKI_1 | RGCY | 5 cut(s) | 42, 200, 253, 482, 593 |
| CviQI | GTAC | 1 cut(s) | 550 |
| DdeI | CTNAG | 1 cut(s) | 275 |
| DpnI | GATC | 3 cut(s) | 23, 288, 374 |
| DpnII | GATC | 3 cut(s) | 21, 286, 372 |
| Eco81I | CCTNAGG | 1 cut(s) | 275 |
| EcoRI | GAATTC | 2 cut(s) | 485, 646 |
| FaeI | CATG | 3 cut(s) | 32, 588, 723 |
| FaqI | GGGAC | 1 cut(s) | 203 |
| FatI | CATG | 3 cut(s) | 28, 584, 719 |
| FbaI | TGATCA | 1 cut(s) | 372 |
| FokI | GGATG | 1 cut(s) | 253 |
| FspBI | CTAG | 1 cut(s) | 173 |
| GsuI | CTGGAG | 1 cut(s) | 189 |
| HgaI | GACGC | 1 cut(s) | 590 |
| Hin1II | CATG | 3 cut(s) | 32, 588, 723 |
| HincII | GTYRAC | 1 cut(s) | 580 |
| HindII | GTYRAC | 1 cut(s) | 580 |
| HindIII | AAGCTT | 1 cut(s) | 251 |
| HinfI | GANTC | 2 cut(s) | 245, 457 |
| HphI | GGTGA | 1 cut(s) | 289 |
| Hpy166II | GTNNAC | 3 cut(s) | 541, 552, 580 |
| Hpy188I | TCNGA | 2 cut(s) | 465, 604 |
| Hpy188III | TCNNGA | 5 cut(s) | 80, 173, 206, 672, 710 |
| Hpy8I | GTNNAC | 3 cut(s) | 541, 552, 580 |
| HpyCH4III | ACNGT | 2 cut(s) | 107, 517 |
| HpyCH4IV | ACGT | 1 cut(s) | 576 |
| HpyCH4V | TGCA | 5 cut(s) | 189, 334, 438, 588, 639 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 590, 636 |
| HpyF3I | CTNAG | 1 cut(s) | 275 |
| HpySE526I | ACGT | 1 cut(s) | 576 |
| Hsp92II | CATG | 3 cut(s) | 32, 588, 723 |
| Ksp22I | TGATCA | 1 cut(s) | 372 |
| Kzo9I | GATC | 3 cut(s) | 21, 286, 372 |
| LpnPI | CCDG | 9 cut(s) | 46, 219, 223, 287, 336, 455, 483, 534, 695 |
| LweI | GCATC | 2 cut(s) | 356, 425 |
| MaeI | CTAG | 1 cut(s) | 173 |
| MaeII | ACGT | 1 cut(s) | 576 |
| MaeIII | GTNAC | 1 cut(s) | 388 |
| MalI | GATC | 3 cut(s) | 23, 288, 374 |
| MboI | GATC | 3 cut(s) | 21, 286, 372 |
| MboII | GAAGA | 2 cut(s) | 296, 545 |
| MflI | RGATCY | 1 cut(s) | 286 |
| MlyI | GAGTC | 1 cut(s) | 254 |
| MnlI | CCTC | 3 cut(s) | 270, 273, 635 |
| MseI | TTAA | 3 cut(s) | 98, 167, 383 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 590, 636 |
| NdeII | GATC | 3 cut(s) | 21, 286, 372 |
| NlaIII | CATG | 3 cut(s) | 32, 588, 723 |
| NmuCI | GTSAC | 1 cut(s) | 388 |
| NspI | RCATGY | 2 cut(s) | 32, 588 |
| PaeI | GCATGC | 1 cut(s) | 588 |
| PfeI | GAWTC | 1 cut(s) | 457 |
| PleI | GAGTC | 1 cut(s) | 253 |
| PpsI | GAGTC | 1 cut(s) | 253 |
| PshBI | ATTAAT | 1 cut(s) | 98 |
| Psp1406I | AACGTT | 1 cut(s) | 576 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 501, 533, 542, 574 |
| PstNI | CAGNNNCTG | 1 cut(s) | 521 |
| PsuI | RGATCY | 1 cut(s) | 286 |
| RsaI | GTAC | 1 cut(s) | 551 |
| RsaNI | GTAC | 1 cut(s) | 550 |
| SaqAI | TTAA | 3 cut(s) | 98, 167, 383 |
| Sau3AI | GATC | 3 cut(s) | 21, 286, 372 |
| SchI | GAGTC | 1 cut(s) | 254 |
| SetI | ASST | 8 cut(s) | 44, 255, 276, 355, 484, 560, 579, 622 |
| SfaNI | GCATC | 2 cut(s) | 356, 425 |
| SphI | GCATGC | 1 cut(s) | 588 |
| SspMI | CTAG | 1 cut(s) | 173 |
| TaaI | ACNGT | 2 cut(s) | 107, 517 |
| TaiI | ACGT | 1 cut(s) | 579 |
| TatI | WGTACW | 1 cut(s) | 549 |
| TfiI | GAWTC | 1 cut(s) | 457 |
| Tru1I | TTAA | 3 cut(s) | 98, 167, 383 |
| Tru9I | TTAA | 3 cut(s) | 98, 167, 383 |
| TscAI | CASTG | 2 cut(s) | 61, 110 |
| TseFI | GTSAC | 1 cut(s) | 388 |
| Tsp45I | GTSAC | 1 cut(s) | 388 |
| TspDTI | ATGAA | 1 cut(s) | 449 |
| TspRI | CASTG | 2 cut(s) | 61, 110 |
| VspI | ATTAAT | 1 cut(s) | 98 |
| XapI | RAATTY | 8 cut(s) | 69, 83, 114, 395, 408, 485, 646, 655 |
| XbaI | TCTAGA | 1 cut(s) | 172 |
| XceI | RCATGY | 2 cut(s) | 32, 588 |
| XspI | CTAG | 1 cut(s) | 173 |