DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 14 |
| AcsI | RAATTY | 2 cut(s) | 101, 526 |
| AfaI | GTAC | 2 cut(s) | 508, 537 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 443 |
| AflIII | ACRYGT | 1 cut(s) | 197 |
| AgsI | TTSAA | 6 cut(s) | 69, 113, 224, 332, 390, 532 |
| AluBI | AGCT | 5 cut(s) | 133, 144, 343, 386, 460 |
| AluI | AGCT | 5 cut(s) | 133, 144, 343, 386, 460 |
| Alw26I | GTCTC | 2 cut(s) | 244, 304 |
| AlwI | GGATC | 1 cut(s) | 14 |
| ApeKI | GCWGC | 1 cut(s) | 40 |
| ApoI | RAATTY | 2 cut(s) | 101, 526 |
| AsuHPI | GGTGA | 1 cut(s) | 269 |
| BbsI | GAAGAC | 1 cut(s) | 480 |
| BbvI | GCAGC | 1 cut(s) | 27 |
| BccI | CCATC | 3 cut(s) | 407, 411, 497 |
| BclI | TGATCA | 1 cut(s) | 562 |
| BcoDI | GTCTC | 2 cut(s) | 244, 304 |
| BfmI | CTRYAG | 1 cut(s) | 451 |
| BglII | AGATCT | 1 cut(s) | 62 |
| BisI | GCNGC | 1 cut(s) | 41 |
| BlsI | GCNGC | 1 cut(s) | 42 |
| BmsI | GCATC | 3 cut(s) | 52, 437, 472 |
| BpiI | GAAGAC | 1 cut(s) | 480 |
| Bsa29I | ATCGAT | 1 cut(s) | 18 |
| BsaI | GGTCTC | 1 cut(s) | 304 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 443 |
| Bse1I | ACTGG | 2 cut(s) | 280, 321 |
| Bse3DI | GCAATG | 1 cut(s) | 502 |
| BseCI | ATCGAT | 1 cut(s) | 18 |
| BseGI | GGATG | 3 cut(s) | 422, 452, 508 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 443 |
| BseMI | GCAATG | 1 cut(s) | 502 |
| BseMII | CTCAG | 1 cut(s) | 285 |
| BseNI | ACTGG | 2 cut(s) | 280, 321 |
| BseRI | GAGGAG | 3 cut(s) | 136, 242, 245 |
| BseXI | GCAGC | 1 cut(s) | 27 |
| BshVI | ATCGAT | 1 cut(s) | 18 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 443 |
| BsmAI | GTCTC | 2 cut(s) | 244, 304 |
| Bso31I | GGTCTC | 1 cut(s) | 304 |
| Bsp143I | GATC | 3 cut(s) | 19, 62, 562 |
| BspCNI | CTCAG | 1 cut(s) | 286 |
| BspDI | ATCGAT | 1 cut(s) | 18 |
| BspPI | GGATC | 1 cut(s) | 14 |
| BspTNI | GGTCTC | 1 cut(s) | 304 |
| BsrDI | GCAATG | 1 cut(s) | 502 |
| BsrI | ACTGG | 2 cut(s) | 280, 321 |
| BssMI | GATC | 3 cut(s) | 19, 62, 562 |
| Bst4CI | ACNGT | 1 cut(s) | 325 |
| Bst6I | CTCTTC | 1 cut(s) | 219 |
| BstDEI | CTNAG | 2 cut(s) | 294, 351 |
| BstF5I | GGATG | 3 cut(s) | 422, 452, 508 |
| BstKTI | GATC | 3 cut(s) | 22, 65, 565 |
| BstMAI | GTCTC | 2 cut(s) | 244, 304 |
| BstMBI | GATC | 3 cut(s) | 19, 62, 562 |
| BstNSI | RCATGY | 1 cut(s) | 201 |
| BstSFI | CTRYAG | 1 cut(s) | 451 |
| BstV1I | GCAGC | 1 cut(s) | 27 |
| BstV2I | GAAGAC | 1 cut(s) | 480 |
| BstX2I | RGATCY | 1 cut(s) | 62 |
| BstYI | RGATCY | 1 cut(s) | 62 |
| Bsu15I | ATCGAT | 1 cut(s) | 18 |
| BsuTUI | ATCGAT | 1 cut(s) | 18 |
| BtsCI | GGATG | 3 cut(s) | 422, 452, 508 |
| BtsI | GCAGTG | 1 cut(s) | 174 |
| BtsIMutI | CAGTG | 2 cut(s) | 174, 477 |
| ClaI | ATCGAT | 1 cut(s) | 18 |
| Csp6I | GTAC | 2 cut(s) | 507, 536 |
| CviAII | CATG | 3 cut(s) | 198, 361, 551 |
| CviJI | RGCY | 6 cut(s) | 40, 133, 144, 343, 386, 460 |
| CviKI_1 | RGCY | 6 cut(s) | 40, 133, 144, 343, 386, 460 |
| CviQI | GTAC | 2 cut(s) | 507, 536 |
| DdeI | CTNAG | 2 cut(s) | 294, 351 |
| DpnI | GATC | 3 cut(s) | 21, 64, 564 |
| DpnII | GATC | 3 cut(s) | 19, 62, 562 |
| Eam1104I | CTCTTC | 1 cut(s) | 219 |
| EarI | CTCTTC | 1 cut(s) | 219 |
| Eco31I | GGTCTC | 1 cut(s) | 304 |
| Eco32I | GATATC | 1 cut(s) | 265 |
| EcoRV | GATATC | 1 cut(s) | 265 |
| FaeI | CATG | 3 cut(s) | 201, 364, 554 |
| FaiI | YATR | 9 cut(s) | 97, 195, 199, 339, 362, 426, 540, 542, 552 |
| FatI | CATG | 3 cut(s) | 197, 360, 550 |
| FauNDI | CATATG | 1 cut(s) | 540 |
| FbaI | TGATCA | 1 cut(s) | 562 |
| Fnu4HI | GCNGC | 1 cut(s) | 41 |
| FokI | GGATG | 3 cut(s) | 429, 459, 515 |
| Fsp4HI | GCNGC | 1 cut(s) | 41 |
| GluI | GCNGC | 1 cut(s) | 41 |
| Hin1II | CATG | 3 cut(s) | 201, 364, 554 |
| HincII | GTYRAC | 2 cut(s) | 273, 281 |
| HindII | GTYRAC | 2 cut(s) | 273, 281 |
| HindIII | AAGCTT | 1 cut(s) | 384 |
| HinfI | GANTC | 3 cut(s) | 368, 399, 575 |
| HphI | GGTGA | 1 cut(s) | 269 |
| Hpy166II | GTNNAC | 4 cut(s) | 273, 281, 489, 509 |
| Hpy188I | TCNGA | 3 cut(s) | 88, 295, 396 |
| Hpy8I | GTNNAC | 4 cut(s) | 273, 281, 489, 509 |
| HpyAV | CCTTC | 1 cut(s) | 358 |
| HpyCH4III | ACNGT | 1 cut(s) | 325 |
| HpyCH4V | TGCA | 4 cut(s) | 27, 43, 179, 495 |
| HpyF3I | CTNAG | 2 cut(s) | 294, 351 |
| Hsp92II | CATG | 3 cut(s) | 201, 364, 554 |
| Ksp22I | TGATCA | 1 cut(s) | 562 |
| Kzo9I | GATC | 3 cut(s) | 19, 62, 562 |
| LmnI | GCTCC | 1 cut(s) | 457 |
| LpnPI | CCDG | 7 cut(s) | 168, 231, 253, 261, 302, 429, 439 |
| Lsp1109I | GCAGC | 1 cut(s) | 27 |
| LweI | GCATC | 3 cut(s) | 52, 437, 472 |
| MalI | GATC | 3 cut(s) | 21, 64, 564 |
| MboI | GATC | 3 cut(s) | 19, 62, 562 |
| MboII | GAAGA | 3 cut(s) | 57, 236, 485 |
| MfeI | CAATTG | 1 cut(s) | 332 |
| MflI | RGATCY | 1 cut(s) | 62 |
| MluCI | AATT | 7 cut(s) | 89, 101, 115, 138, 332, 390, 526 |
| MnlI | CCTC | 6 cut(s) | 114, 117, 220, 223, 253, 289 |
| MseI | TTAA | 2 cut(s) | 345, 580 |
| MslI | CAYNNNNRTG | 2 cut(s) | 196, 198 |
| MunI | CAATTG | 1 cut(s) | 332 |
| NdeI | CATATG | 1 cut(s) | 540 |
| NdeII | GATC | 3 cut(s) | 19, 62, 562 |
| NlaIII | CATG | 3 cut(s) | 201, 364, 554 |
| NspI | RCATGY | 1 cut(s) | 201 |
| PciI | ACATGT | 1 cut(s) | 197 |
| PfeI | GAWTC | 3 cut(s) | 368, 399, 575 |
| PkrI | GCNGC | 1 cut(s) | 42 |
| PscI | ACATGT | 1 cut(s) | 197 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 178, 210 |
| PsuI | RGATCY | 1 cut(s) | 62 |
| RsaI | GTAC | 2 cut(s) | 508, 537 |
| RsaNI | GTAC | 2 cut(s) | 507, 536 |
| RseI | CAYNNNNRTG | 2 cut(s) | 196, 198 |
| SaqAI | TTAA | 2 cut(s) | 345, 580 |
| SatI | GCNGC | 1 cut(s) | 41 |
| Sau3AI | GATC | 3 cut(s) | 19, 62, 562 |
| SfaNI | GCATC | 3 cut(s) | 52, 437, 472 |
| SfcI | CTRYAG | 1 cut(s) | 451 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 196, 198 |
| Sse9I | AATT | 7 cut(s) | 89, 101, 115, 138, 332, 390, 526 |
| TaaI | ACNGT | 1 cut(s) | 325 |
| TaqI | TCGA | 1 cut(s) | 18 |
| TasI | AATT | 7 cut(s) | 89, 101, 115, 138, 332, 390, 526 |
| TfiI | GAWTC | 3 cut(s) | 368, 399, 575 |
| Tru1I | TTAA | 2 cut(s) | 345, 580 |
| Tru9I | TTAA | 2 cut(s) | 345, 580 |
| TscAI | CASTG | 2 cut(s) | 181, 484 |
| TseI | GCWGC | 1 cut(s) | 40 |
| TspDTI | ATGAA | 1 cut(s) | 377 |
| TspRI | CASTG | 2 cut(s) | 181, 484 |
| XapI | RAATTY | 2 cut(s) | 101, 526 |
| XceI | RCATGY | 1 cut(s) | 201 |