DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 452 |
| Acc36I | ACCTGC | 1 cut(s) | 452 |
| AclWI | GGATC | 5 cut(s) | 755, 789, 809, 843, 863 |
| AcsI | RAATTY | 1 cut(s) | 404 |
| AcuI | CTGAAG | 2 cut(s) | 157, 933 |
| AfaI | GTAC | 7 cut(s) | 433, 497, 556, 633, 750, 804, 858 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 289 |
| AgsI | TTSAA | 3 cut(s) | 97, 116, 184 |
| AjnI | CCWGG | 1 cut(s) | 469 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 639, 671 |
| AluBI | AGCT | 4 cut(s) | 250, 491, 585, 728 |
| AluI | AGCT | 4 cut(s) | 250, 491, 585, 728 |
| Alw21I | GWGCWC | 1 cut(s) | 129 |
| Alw26I | GTCTC | 1 cut(s) | 324 |
| AlwI | GGATC | 5 cut(s) | 755, 789, 809, 843, 863 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 428 |
| ApeKI | GCWGC | 4 cut(s) | 488, 536, 787, 841 |
| ApoI | RAATTY | 1 cut(s) | 404 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 348 |
| AsuC2I | CCSGG | 1 cut(s) | 931 |
| AsuHPI | GGTGA | 5 cut(s) | 126, 298, 329, 535, 671 |
| AxyI | CCTNAGG | 1 cut(s) | 284 |
| BbsI | GAAGAC | 1 cut(s) | 300 |
| Bbv12I | GWGCWC | 1 cut(s) | 129 |
| BbvCI | CCTCAGC | 1 cut(s) | 599 |
| BbvI | GCAGC | 4 cut(s) | 500, 523, 799, 853 |
| BccI | CCATC | 1 cut(s) | 751 |
| BciT130I | CCWGG | 1 cut(s) | 471 |
| BclI | TGATCA | 1 cut(s) | 73 |
| BcnI | CCSGG | 1 cut(s) | 931 |
| BcoDI | GTCTC | 1 cut(s) | 324 |
| BfmI | CTRYAG | 1 cut(s) | 537 |
| BfuAI | ACCTGC | 1 cut(s) | 452 |
| BglII | AGATCT | 1 cut(s) | 15 |
| BisI | GCNGC | 4 cut(s) | 489, 537, 788, 842 |
| BlsI | GCNGC | 4 cut(s) | 490, 538, 789, 843 |
| BmcAI | AGTACT | 1 cut(s) | 858 |
| Bme1390I | CCNGG | 2 cut(s) | 471, 931 |
| BmrFI | CCNGG | 2 cut(s) | 471, 931 |
| BmrI | ACTGGG | 2 cut(s) | 813, 867 |
| BmsI | GCATC | 5 cut(s) | 229, 434, 588, 806, 860 |
| BmuI | ACTGGG | 2 cut(s) | 813, 867 |
| BoxI | GACNNNNGTC | 1 cut(s) | 174 |
| BpiI | GAAGAC | 1 cut(s) | 300 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 116, 148 |
| BpmI | CTGGAG | 1 cut(s) | 272 |
| Bpu10I | CCTNAGC | 1 cut(s) | 599 |
| BpuMI | CCSGG | 1 cut(s) | 931 |
| BsaAI | YACGTR | 1 cut(s) | 121 |
| BsaWI | WCCGGW | 2 cut(s) | 778, 832 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 121, 151, 245, 275 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 289 |
| Bse1I | ACTGG | 3 cut(s) | 368, 819, 873 |
| Bse21I | CCTNAGG | 1 cut(s) | 284 |
| BseBI | CCWGG | 1 cut(s) | 471 |
| BseGI | GGATG | 1 cut(s) | 613 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 289 |
| BseMII | CTCAG | 3 cut(s) | 275, 483, 613 |
| BseNI | ACTGG | 3 cut(s) | 368, 819, 873 |
| BseRI | GAGGAG | 2 cut(s) | 301, 587 |
| BseXI | GCAGC | 4 cut(s) | 500, 523, 799, 853 |
| BsiHKAI | GWGCWC | 1 cut(s) | 129 |
| BsiSI | CCGG | 3 cut(s) | 779, 833, 930 |
| BslFI | GGGAC | 1 cut(s) | 946 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 289 |
| BsmAI | GTCTC | 1 cut(s) | 324 |
| BsmFI | GGGAC | 1 cut(s) | 946 |
| Bsp1286I | GDGCHC | 1 cut(s) | 129 |
| BspCNI | CTCAG | 3 cut(s) | 276, 484, 612 |
| BspHI | TCATGA | 2 cut(s) | 76, 517 |
| BspMAI | CTGCAG | 1 cut(s) | 541 |
| BspMI | ACCTGC | 1 cut(s) | 452 |
| BspPI | GGATC | 5 cut(s) | 755, 789, 809, 843, 863 |
| BsrI | ACTGG | 3 cut(s) | 368, 819, 873 |
| Bst2UI | CCWGG | 1 cut(s) | 471 |
| Bst4CI | ACNGT | 3 cut(s) | 33, 655, 942 |
| BstBAI | YACGTR | 1 cut(s) | 121 |
| BstDEI | CTNAG | 4 cut(s) | 284, 299, 492, 599 |
| BstF5I | GGATG | 1 cut(s) | 613 |
| BstMAI | GTCTC | 1 cut(s) | 324 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 217 |
| BstNI | CCWGG | 1 cut(s) | 471 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 174 |
| BstSCI | CCNGG | 2 cut(s) | 469, 929 |
| BstSFI | CTRYAG | 1 cut(s) | 537 |
| BstV1I | GCAGC | 4 cut(s) | 500, 523, 799, 853 |
| BstV2I | GAAGAC | 1 cut(s) | 300 |
| BstX2I | RGATCY | 1 cut(s) | 15 |
| BstYI | RGATCY | 1 cut(s) | 15 |
| Bsu36I | CCTNAGG | 1 cut(s) | 284 |
| BtsCI | GGATG | 1 cut(s) | 613 |
| BtsIMutI | CAGTG | 2 cut(s) | 29, 938 |
| BveI | ACCTGC | 1 cut(s) | 452 |
| CaiI | CAGNNNCTG | 1 cut(s) | 428 |
| CciI | TCATGA | 2 cut(s) | 76, 517 |
| Csp6I | GTAC | 7 cut(s) | 432, 496, 555, 632, 749, 803, 857 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 94, 129 |
| CviAII | CATG | 9 cut(s) | 77, 194, 230, 274, 518, 533, 758, 812, 866 |
| CviJI | RGCY | 7 cut(s) | 250, 491, 585, 728, 736, 790, 844 |
| CviKI_1 | RGCY | 7 cut(s) | 250, 491, 585, 728, 736, 790, 844 |
| CviQI | GTAC | 7 cut(s) | 432, 496, 555, 632, 749, 803, 857 |
| DdeI | CTNAG | 4 cut(s) | 284, 299, 492, 599 |
| DraI | TTTAAA | 1 cut(s) | 903 |
| Eco57I | CTGAAG | 2 cut(s) | 157, 933 |
| Eco81I | CCTNAGG | 1 cut(s) | 284 |
| EcoRII | CCWGG | 1 cut(s) | 469 |
| EcoT22I | ATGCAT | 1 cut(s) | 157 |
| FaeI | CATG | 9 cut(s) | 80, 197, 233, 277, 521, 536, 761, 815, 869 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 195, 227 |
| FaqI | GGGAC | 1 cut(s) | 946 |
| FatI | CATG | 9 cut(s) | 76, 193, 229, 273, 517, 532, 757, 811, 865 |
| FbaI | TGATCA | 1 cut(s) | 73 |
| Fnu4HI | GCNGC | 4 cut(s) | 489, 537, 788, 842 |
| FokI | GGATG | 1 cut(s) | 600 |
| Fsp4HI | GCNGC | 4 cut(s) | 489, 537, 788, 842 |
| GluI | GCNGC | 4 cut(s) | 489, 537, 788, 842 |
| GsuI | CTGGAG | 1 cut(s) | 272 |
| HapII | CCGG | 3 cut(s) | 779, 833, 930 |
| Hin1II | CATG | 9 cut(s) | 80, 197, 233, 277, 521, 536, 761, 815, 869 |
| HinfI | GANTC | 6 cut(s) | 101, 254, 303, 396, 466, 953 |
| HpaII | CCGG | 3 cut(s) | 779, 833, 930 |
| HphI | GGTGA | 5 cut(s) | 126, 298, 329, 535, 671 |
| Hpy166II | GTNNAC | 2 cut(s) | 557, 945 |
| Hpy188I | TCNGA | 2 cut(s) | 765, 952 |
| Hpy188III | TCNNGA | 7 cut(s) | 77, 146, 167, 189, 400, 518, 712 |
| Hpy8I | GTNNAC | 2 cut(s) | 557, 945 |
| HpyAV | CCTTC | 3 cut(s) | 747, 801, 855 |
| HpyCH4III | ACNGT | 3 cut(s) | 33, 655, 942 |
| HpyCH4IV | ACGT | 1 cut(s) | 120 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 155, 447, 539, 797, 851 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 217 |
| HpyF3I | CTNAG | 4 cut(s) | 284, 299, 492, 599 |
| HpySE526I | ACGT | 1 cut(s) | 120 |
| Hsp92II | CATG | 9 cut(s) | 80, 197, 233, 277, 521, 536, 761, 815, 869 |
| Ksp22I | TGATCA | 1 cut(s) | 73 |
| LmnI | GCTCC | 2 cut(s) | 124, 473 |
| Lsp1109I | GCAGC | 4 cut(s) | 500, 523, 799, 853 |
| LweI | GCATC | 5 cut(s) | 229, 434, 588, 806, 860 |
| MaeII | ACGT | 1 cut(s) | 120 |
| MaeIII | GTNAC | 1 cut(s) | 541 |
| MboII | GAAGA | 4 cut(s) | 155, 305, 491, 602 |
| MfeI | CAATTG | 1 cut(s) | 569 |
| MflI | RGATCY | 1 cut(s) | 15 |
| MhlI | GDGCHC | 1 cut(s) | 129 |
| MluCI | AATT | 5 cut(s) | 141, 179, 404, 513, 569 |
| MlyI | GAGTC | 1 cut(s) | 263 |
| MnlI | CCTC | 9 cut(s) | 142, 147, 259, 279, 282, 320, 608, 908, 954 |
| Mph1103I | ATGCAT | 1 cut(s) | 157 |
| MroXI | GAANNNNTTC | 1 cut(s) | 348 |
| MseI | TTAA | 6 cut(s) | 159, 383, 392, 455, 681, 902 |
| MspA1I | CMGCKG | 2 cut(s) | 491, 585 |
| MspI | CCGG | 3 cut(s) | 779, 833, 930 |
| MspR9I | CCNGG | 2 cut(s) | 471, 931 |
| MunI | CAATTG | 1 cut(s) | 569 |
| MvaI | CCWGG | 1 cut(s) | 471 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 217 |
| NciI | CCSGG | 1 cut(s) | 931 |
| NlaIII | CATG | 9 cut(s) | 80, 197, 233, 277, 521, 536, 761, 815, 869 |
| NmuCI | GTSAC | 1 cut(s) | 541 |
| NsiI | ATGCAT | 1 cut(s) | 157 |
| PagI | TCATGA | 2 cut(s) | 76, 517 |
| PaqCI | CACCTGC | 1 cut(s) | 452 |
| PdmI | GAANNNNTTC | 1 cut(s) | 348 |
| PfeI | GAWTC | 5 cut(s) | 101, 303, 396, 466, 953 |
| PfoI | TCCNGGA | 1 cut(s) | 469 |
| PkrI | GCNGC | 4 cut(s) | 490, 538, 789, 843 |
| PleI | GAGTC | 1 cut(s) | 262 |
| PpsI | GAGTC | 1 cut(s) | 262 |
| Ppu21I | YACGTR | 1 cut(s) | 121 |
| PshAI | GACNNNNGTC | 1 cut(s) | 174 |
| Psp6I | CCWGG | 1 cut(s) | 469 |
| PspGI | CCWGG | 1 cut(s) | 469 |
| PstI | CTGCAG | 1 cut(s) | 541 |
| PstNI | CAGNNNCTG | 1 cut(s) | 428 |
| PsuI | RGATCY | 1 cut(s) | 15 |
| PvuII | CAGCTG | 2 cut(s) | 491, 585 |
| RsaI | GTAC | 7 cut(s) | 433, 497, 556, 633, 750, 804, 858 |
| RsaNI | GTAC | 7 cut(s) | 432, 496, 555, 632, 749, 803, 857 |
| SaqAI | TTAA | 6 cut(s) | 159, 383, 392, 455, 681, 902 |
| SatI | GCNGC | 4 cut(s) | 489, 537, 788, 842 |
| ScaI | AGTACT | 1 cut(s) | 858 |
| SchI | GAGTC | 1 cut(s) | 263 |
| ScrFI | CCNGG | 2 cut(s) | 471, 931 |
| SduI | GDGCHC | 1 cut(s) | 129 |
| SfaNI | GCATC | 5 cut(s) | 229, 434, 588, 806, 860 |
| SfcI | CTRYAG | 1 cut(s) | 537 |
| Sse9I | AATT | 5 cut(s) | 141, 179, 404, 513, 569 |
| StyD4I | CCNGG | 2 cut(s) | 469, 929 |
| TaaI | ACNGT | 3 cut(s) | 33, 655, 942 |
| TaiI | ACGT | 1 cut(s) | 123 |
| TasI | AATT | 5 cut(s) | 141, 179, 404, 513, 569 |
| TatI | WGTACW | 2 cut(s) | 495, 856 |
| TfiI | GAWTC | 5 cut(s) | 101, 303, 396, 466, 953 |
| Tru1I | TTAA | 6 cut(s) | 159, 383, 392, 455, 681, 902 |
| Tru9I | TTAA | 6 cut(s) | 159, 383, 392, 455, 681, 902 |
| TscAI | CASTG | 2 cut(s) | 36, 945 |
| TseFI | GTSAC | 1 cut(s) | 541 |
| TseI | GCWGC | 4 cut(s) | 488, 536, 787, 841 |
| Tsp45I | GTSAC | 1 cut(s) | 541 |
| TspDTI | ATGAA | 5 cut(s) | 114, 210, 255, 506, 714 |
| TspRI | CASTG | 2 cut(s) | 36, 945 |
| XapI | RAATTY | 1 cut(s) | 404 |
| XmnI | GAANNNNTTC | 1 cut(s) | 348 |
| ZrmI | AGTACT | 1 cut(s) | 858 |
| Zsp2I | ATGCAT | 1 cut(s) | 157 |