DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 31 - 90 | 4.8e-11 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 230 |
| Acc36I | ACCTGC | 1 cut(s) | 166 |
| Acc65I | GGTACC | 1 cut(s) | 335 |
| AccB1I | GGYRCC | 1 cut(s) | 335 |
| AciI | CCGC | 2 cut(s) | 82, 184 |
| AclWI | GGATC | 2 cut(s) | 194, 382 |
| AcuI | CTGAAG | 2 cut(s) | 363, 384 |
| AfaI | GTAC | 3 cut(s) | 91, 209, 337 |
| AjnI | CCWGG | 1 cut(s) | 92 |
| AluBI | AGCT | 3 cut(s) | 136, 199, 404 |
| AluI | AGCT | 3 cut(s) | 136, 199, 404 |
| AlwI | GGATC | 2 cut(s) | 194, 382 |
| ApeKI | GCWGC | 1 cut(s) | 50 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 281 |
| Asp718I | GGTACC | 1 cut(s) | 335 |
| AspS9I | GGNCC | 1 cut(s) | 159 |
| AsuC2I | CCSGG | 1 cut(s) | 55 |
| AsuII | TTCGAA | 1 cut(s) | 290 |
| AvaII | GGWCC | 1 cut(s) | 159 |
| AxyI | CCTNAGG | 1 cut(s) | 351 |
| BaeGI | GKGCMC | 1 cut(s) | 306 |
| BanI | GGYRCC | 1 cut(s) | 335 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 353, 385 |
| BbvI | GCAGC | 1 cut(s) | 62 |
| BccI | CCATC | 1 cut(s) | 26 |
| BciT130I | CCWGG | 1 cut(s) | 94 |
| BcnI | CCSGG | 1 cut(s) | 55 |
| BfuAI | ACCTGC | 1 cut(s) | 166 |
| BisI | GCNGC | 1 cut(s) | 51 |
| BlsI | GCNGC | 1 cut(s) | 52 |
| Bme1390I | CCNGG | 2 cut(s) | 55, 94 |
| Bme18I | GGWCC | 1 cut(s) | 159 |
| BmgT120I | GGNCC | 1 cut(s) | 159 |
| BmiI | GGNNCC | 4 cut(s) | 6, 161, 245, 337 |
| BmrFI | CCNGG | 2 cut(s) | 55, 94 |
| BpmI | CTGGAG | 1 cut(s) | 93 |
| Bpu14I | TTCGAA | 1 cut(s) | 290 |
| BpuMI | CCSGG | 1 cut(s) | 55 |
| BsaBI | GATNNNNATC | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 91, 121 |
| Bse21I | CCTNAGG | 1 cut(s) | 351 |
| Bse8I | GATNNNNATC | 1 cut(s) | 122 |
| BseBI | CCWGG | 1 cut(s) | 94 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseGI | GGATG | 1 cut(s) | 37 |
| BseJI | GATNNNNATC | 1 cut(s) | 122 |
| BseMII | CTCAG | 1 cut(s) | 342 |
| BseSI | GKGCMC | 1 cut(s) | 306 |
| BseXI | GCAGC | 1 cut(s) | 62 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| BshNI | GGYRCC | 1 cut(s) | 335 |
| BsiSI | CCGG | 1 cut(s) | 54 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| Bsp119I | TTCGAA | 1 cut(s) | 290 |
| Bsp1286I | GDGCHC | 1 cut(s) | 306 |
| Bsp143I | GATC | 5 cut(s) | 112, 186, 216, 314, 374 |
| BspACI | CCGC | 2 cut(s) | 82, 184 |
| BspCNI | CTCAG | 1 cut(s) | 343 |
| BspLI | GGNNCC | 4 cut(s) | 6, 161, 245, 337 |
| BspMI | ACCTGC | 1 cut(s) | 166 |
| BspPI | GGATC | 2 cut(s) | 194, 382 |
| BspT104I | TTCGAA | 1 cut(s) | 290 |
| BspT107I | GGYRCC | 1 cut(s) | 335 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssMI | GATC | 5 cut(s) | 112, 186, 216, 314, 374 |
| Bst2UI | CCWGG | 1 cut(s) | 94 |
| Bst4CI | ACNGT | 2 cut(s) | 169, 207 |
| BstBI | TTCGAA | 1 cut(s) | 290 |
| BstC8I | GCNNGC | 1 cut(s) | 80 |
| BstDEI | CTNAG | 1 cut(s) | 351 |
| BstF5I | GGATG | 1 cut(s) | 37 |
| BstKTI | GATC | 5 cut(s) | 115, 189, 219, 317, 377 |
| BstMBI | GATC | 5 cut(s) | 112, 186, 216, 314, 374 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 79, 84, 181, 401 |
| BstNI | CCWGG | 1 cut(s) | 94 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 2 cut(s) | 53, 92 |
| BstSLI | GKGCMC | 1 cut(s) | 306 |
| BstV1I | GCAGC | 1 cut(s) | 62 |
| BstX2I | RGATCY | 2 cut(s) | 186, 374 |
| BstYI | RGATCY | 2 cut(s) | 186, 374 |
| Bsu36I | CCTNAGG | 1 cut(s) | 351 |
| BtsCI | GGATG | 1 cut(s) | 37 |
| BveI | ACCTGC | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 1 cut(s) | 80 |
| Cfr13I | GGNCC | 1 cut(s) | 159 |
| CsiI | ACCWGGT | 1 cut(s) | 92 |
| Csp6I | GTAC | 3 cut(s) | 90, 208, 336 |
| CviAII | CATG | 3 cut(s) | 70, 299, 307 |
| CviJI | RGCY | 5 cut(s) | 53, 136, 199, 322, 404 |
| CviKI_1 | RGCY | 5 cut(s) | 53, 136, 199, 322, 404 |
| CviQI | GTAC | 3 cut(s) | 90, 208, 336 |
| DdeI | CTNAG | 1 cut(s) | 351 |
| DpnI | GATC | 5 cut(s) | 114, 188, 218, 316, 376 |
| DpnII | GATC | 5 cut(s) | 112, 186, 216, 314, 374 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 230 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 230 |
| EciI | GGCGGA | 1 cut(s) | 97 |
| Eco47I | GGWCC | 1 cut(s) | 159 |
| Eco57I | CTGAAG | 2 cut(s) | 363, 384 |
| Eco81I | CCTNAGG | 1 cut(s) | 351 |
| EcoO109I | RGGNCCY | 1 cut(s) | 159 |
| EcoRII | CCWGG | 1 cut(s) | 92 |
| FaeI | CATG | 3 cut(s) | 73, 302, 310 |
| FaiI | YATR | 4 cut(s) | 71, 300, 308, 363 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 218, 250 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FatI | CATG | 3 cut(s) | 69, 298, 306 |
| Fnu4HI | GCNGC | 1 cut(s) | 51 |
| FokI | GGATG | 1 cut(s) | 44 |
| Fsp4HI | GCNGC | 1 cut(s) | 51 |
| GluI | GCNGC | 1 cut(s) | 51 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 1 cut(s) | 93 |
| HapII | CCGG | 1 cut(s) | 54 |
| Hin1II | CATG | 3 cut(s) | 73, 302, 310 |
| HinfI | GANTC | 2 cut(s) | 100, 123 |
| HpaII | CCGG | 1 cut(s) | 54 |
| Hpy166II | GTNNAC | 2 cut(s) | 99, 285 |
| Hpy188I | TCNGA | 2 cut(s) | 117, 374 |
| Hpy188III | TCNNGA | 3 cut(s) | 110, 247, 263 |
| Hpy8I | GTNNAC | 2 cut(s) | 99, 285 |
| HpyCH4III | ACNGT | 2 cut(s) | 169, 207 |
| HpyCH4V | TGCA | 2 cut(s) | 78, 310 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 79, 84, 181, 401 |
| HpyF3I | CTNAG | 1 cut(s) | 351 |
| Hsp92II | CATG | 3 cut(s) | 73, 302, 310 |
| KpnI | GGTACC | 1 cut(s) | 339 |
| Kzo9I | GATC | 5 cut(s) | 112, 186, 216, 314, 374 |
| LmnI | GCTCC | 1 cut(s) | 84 |
| Lsp1109I | GCAGC | 1 cut(s) | 62 |
| MabI | ACCWGGT | 1 cut(s) | 92 |
| MalI | GATC | 5 cut(s) | 114, 188, 218, 316, 376 |
| MboI | GATC | 5 cut(s) | 112, 186, 216, 314, 374 |
| MboII | GAAGA | 4 cut(s) | 286, 289, 369, 390 |
| MfeI | CAATTG | 1 cut(s) | 340 |
| MflI | RGATCY | 2 cut(s) | 186, 374 |
| MhlI | GDGCHC | 1 cut(s) | 306 |
| MluCI | AATT | 2 cut(s) | 340, 424 |
| MlyI | GAGTC | 1 cut(s) | 94 |
| MnlI | CCTC | 5 cut(s) | 22, 29, 137, 214, 346 |
| MroXI | GAANNNNTTC | 1 cut(s) | 281 |
| MseI | TTAA | 1 cut(s) | 366 |
| MspA1I | CMGCKG | 2 cut(s) | 184, 199 |
| MspI | CCGG | 1 cut(s) | 54 |
| MspR9I | CCNGG | 2 cut(s) | 55, 94 |
| MunI | CAATTG | 1 cut(s) | 340 |
| MvaI | CCWGG | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 79, 84, 181, 401 |
| NciI | CCSGG | 1 cut(s) | 55 |
| NdeII | GATC | 5 cut(s) | 112, 186, 216, 314, 374 |
| NlaIII | CATG | 3 cut(s) | 73, 302, 310 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 161, 245, 337 |
| NspI | RCATGY | 1 cut(s) | 73 |
| NspV | TTCGAA | 1 cut(s) | 290 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 216 |
| PdmI | GAANNNNTTC | 1 cut(s) | 281 |
| PfeI | GAWTC | 1 cut(s) | 123 |
| PkrI | GCNGC | 1 cut(s) | 52 |
| PleI | GAGTC | 1 cut(s) | 94 |
| PpsI | GAGTC | 1 cut(s) | 94 |
| PpuMI | RGGWCCY | 1 cut(s) | 159 |
| Psp5II | RGGWCCY | 1 cut(s) | 159 |
| Psp6I | CCWGG | 1 cut(s) | 92 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspGI | CCWGG | 1 cut(s) | 92 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 161, 245, 337 |
| PspPI | GGNCC | 1 cut(s) | 159 |
| PspPPI | RGGWCCY | 1 cut(s) | 159 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 162, 194 |
| PsuI | RGATCY | 2 cut(s) | 186, 374 |
| PvuII | CAGCTG | 1 cut(s) | 199 |
| RsaI | GTAC | 3 cut(s) | 91, 209, 337 |
| RsaNI | GTAC | 3 cut(s) | 90, 208, 336 |
| SaqAI | TTAA | 1 cut(s) | 366 |
| SatI | GCNGC | 1 cut(s) | 51 |
| Sau3AI | GATC | 5 cut(s) | 112, 186, 216, 314, 374 |
| Sau96I | GGNCC | 1 cut(s) | 159 |
| SchI | GAGTC | 1 cut(s) | 94 |
| ScrFI | CCNGG | 2 cut(s) | 55, 94 |
| SduI | GDGCHC | 1 cut(s) | 306 |
| SetI | ASST | 9 cut(s) | 98, 138, 161, 180, 201, 261, 352, 406, 424 |
| SexAI | ACCWGGT | 1 cut(s) | 92 |
| SfuI | TTCGAA | 1 cut(s) | 290 |
| SinI | GGWCC | 1 cut(s) | 159 |
| Sse9I | AATT | 2 cut(s) | 340, 424 |
| SsiI | CCGC | 2 cut(s) | 82, 184 |
| StyD4I | CCNGG | 2 cut(s) | 53, 92 |
| TaaI | ACNGT | 2 cut(s) | 169, 207 |
| TaqI | TCGA | 2 cut(s) | 219, 290 |
| TasI | AATT | 2 cut(s) | 340, 424 |
| TfiI | GAWTC | 1 cut(s) | 123 |
| Tru1I | TTAA | 1 cut(s) | 366 |
| Tru9I | TTAA | 1 cut(s) | 366 |
| TseI | GCWGC | 1 cut(s) | 50 |
| TspDTI | ATGAA | 1 cut(s) | 287 |
| TspGWI | ACGGA | 1 cut(s) | 225 |
| VpaK11BI | GGWCC | 1 cut(s) | 159 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XmnI | GAANNNNTTC | 1 cut(s) | 281 |