Pentatricopeptide repeat-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 3160, 3458 |
| AccB1I | GGYRCC | 2 cut(s) | 1675, 3611 |
| AccIII | TCCGGA | 1 cut(s) | 2080 |
| AciI | CCGC | 5 cut(s) | 278, 1394, 3415, 3542, 4373 |
| AclI | AACGTT | 1 cut(s) | 61 |
| AclWI | GGATC | 3 cut(s) | 2704, 3941, 4067 |
| AcoI | YGGCCR | 2 cut(s) | 1041, 1224 |
| AcsI | RAATTY | 5 cut(s) | 1823, 2759, 2905, 3260, 3492 |
| AcuI | CTGAAG | 8 cut(s) | 1923, 2028, 2400, 2624, 2709, 3134, 3468, 3798 |
| AdeI | CACNNNGTG | 1 cut(s) | 2700 |
| AfaI | GTAC | 7 cut(s) | 1936, 2559, 2735, 2900, 2947, 3373, 4158 |
| AfeI | AGCGCT | 1 cut(s) | 3785 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 165, 2719, 2861, 2962, 3541, 3642, 3860, 4372 |
| AgeI | ACCGGT | 1 cut(s) | 2619 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2620 |
| AjnI | CCWGG | 7 cut(s) | 129, 577, 2241, 2713, 2854, 3119, 3265 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1095, 1127, 1221, 1253, 1278, 1310 |
| Alw21I | GWGCWC | 2 cut(s) | 1670, 3402 |
| Alw26I | GTCTC | 3 cut(s) | 932, 1916, 2054 |
| AlwI | GGATC | 3 cut(s) | 2704, 3941, 4067 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1946, 2327 |
| Ama87I | CYCGRG | 3 cut(s) | 929, 3635, 4206 |
| Aor13HI | TCCGGA | 1 cut(s) | 2080 |
| Aor51HI | AGCGCT | 1 cut(s) | 3785 |
| AoxI | GGCC | 9 cut(s) | 11, 525, 1041, 1224, 1866, 2924, 3425, 3487, 3532 |
| ApeKI | GCWGC | 4 cut(s) | 792, 1759, 3047, 4408 |
| ApoI | RAATTY | 5 cut(s) | 1823, 2759, 2905, 3260, 3492 |
| AseI | ATTAAT | 4 cut(s) | 954, 1182, 1365, 2034 |
| AsiGI | ACCGGT | 1 cut(s) | 2619 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1731, 3252, 3719 |
| AspA2I | CCTAGG | 1 cut(s) | 3454 |
| AspLEI | GCGC | 2 cut(s) | 3357, 3786 |
| AspS9I | GGNCC | 4 cut(s) | 123, 2925, 3435, 3699 |
| AsuC2I | CCSGG | 4 cut(s) | 2436, 3636, 3637, 3703 |
| AsuII | TTCGAA | 3 cut(s) | 1307, 3228, 4337 |
| AvaI | CYCGRG | 3 cut(s) | 929, 3635, 4206 |
| AvaII | GGWCC | 3 cut(s) | 123, 3435, 3699 |
| AvrII | CCTAGG | 1 cut(s) | 3454 |
| BaeGI | GKGCMC | 2 cut(s) | 1678, 3294 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 879, 912, 2500, 2533 |
| BanI | GGYRCC | 2 cut(s) | 1675, 3611 |
| BanII | GRGCYC | 2 cut(s) | 3184, 3402 |
| BauI | CACGAG | 1 cut(s) | 1669 |
| BbsI | GAAGAC | 3 cut(s) | 2055, 2619, 4231 |
| Bbv12I | GWGCWC | 2 cut(s) | 1670, 3402 |
| BbvI | GCAGC | 4 cut(s) | 804, 1771, 3059, 4420 |
| BceAI | ACGGC | 1 cut(s) | 512 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3281, 3315 |
| BciT130I | CCWGG | 7 cut(s) | 131, 579, 2243, 2715, 2856, 3121, 3267 |
| BciVI | GTATCC | 1 cut(s) | 2501 |
| BclI | TGATCA | 2 cut(s) | 193, 3087 |
| BcnI | CCSGG | 4 cut(s) | 2436, 3636, 3637, 3703 |
| BcoDI | GTCTC | 3 cut(s) | 932, 1916, 2054 |
| BfaI | CTAG | 4 cut(s) | 165, 1530, 2339, 3455 |
| BfmI | CTRYAG | 2 cut(s) | 1698, 3662 |
| BfoI | RGCGCY | 1 cut(s) | 3787 |
| BfuAI | ACCTGC | 2 cut(s) | 3160, 3458 |
| BfuI | GTATCC | 1 cut(s) | 2501 |
| BisI | GCNGC | 5 cut(s) | 279, 793, 1760, 3048, 4409 |
| BlnI | CCTAGG | 1 cut(s) | 3454 |
| BlsI | GCNGC | 5 cut(s) | 280, 794, 1761, 3049, 4410 |
| Bme18I | GGWCC | 3 cut(s) | 123, 3435, 3699 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2620 |
| BmeT110I | CYCGRG | 3 cut(s) | 929, 3635, 4206 |
| BmgT120I | GGNCC | 4 cut(s) | 123, 2925, 3435, 3699 |
| BmiI | GGNNCC | 8 cut(s) | 1677, 2085, 2392, 2927, 3181, 3613, 3701, 4178 |
| BmrI | ACTGGG | 5 cut(s) | 1065, 1394, 1578, 3039, 3832 |
| BmsI | GCATC | 7 cut(s) | 1873, 2545, 2825, 3147, 4024, 4315, 4342 |
| BmuI | ACTGGG | 5 cut(s) | 1065, 1394, 1578, 3039, 3832 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3312 |
| BpiI | GAAGAC | 3 cut(s) | 2055, 2619, 4231 |
| BpmI | CTGGAG | 1 cut(s) | 361 |
| Bpu14I | TTCGAA | 3 cut(s) | 1307, 3228, 4337 |
| BpuEI | CTTGAG | 2 cut(s) | 222, 4406 |
| BpuMI | CCSGG | 4 cut(s) | 2436, 3636, 3637, 3703 |
| Bsa29I | ATCGAT | 1 cut(s) | 999 |
| BsaAI | YACGTR | 1 cut(s) | 2945 |
| BsaJI | CCNNGG | 7 cut(s) | 578, 2241, 2713, 3120, 3454, 3564, 3635 |
| BsaWI | WCCGGW | 2 cut(s) | 2080, 2619 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 165, 2719, 2861, 2962, 3541, 3642, 3860, 4372 |
| Bse118I | RCCGGY | 2 cut(s) | 2619, 4290 |
| Bse3DI | GCAATG | 5 cut(s) | 2161, 3310, 3482, 3526, 4101 |
| BseAI | TCCGGA | 1 cut(s) | 2080 |
| BseBI | CCWGG | 7 cut(s) | 131, 579, 2243, 2715, 2856, 3121, 3267 |
| BseCI | ATCGAT | 1 cut(s) | 999 |
| BseDI | CCNNGG | 7 cut(s) | 578, 2241, 2713, 3120, 3454, 3564, 3635 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 165, 2719, 2861, 2962, 3541, 3642, 3860, 4372 |
| BseMI | GCAATG | 5 cut(s) | 2161, 3310, 3482, 3526, 4101 |
| BseMII | CTCAG | 5 cut(s) | 1764, 2319, 2465, 3663, 3995 |
| BseSI | GKGCMC | 2 cut(s) | 1678, 3294 |
| BseXI | GCAGC | 4 cut(s) | 804, 1771, 3059, 4420 |
| BseYI | CCCAGC | 3 cut(s) | 2591, 3524, 4262 |
| BsgI | GTGCAG | 3 cut(s) | 1997, 2292, 4427 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4377 |
| BshFI | GGCC | 9 cut(s) | 13, 527, 1043, 1226, 1868, 2926, 3427, 3489, 3534 |
| BshNI | GGYRCC | 2 cut(s) | 1675, 3611 |
| BshTI | ACCGGT | 1 cut(s) | 2619 |
| BshVI | ATCGAT | 1 cut(s) | 999 |
| BsiEI | CGRYCG | 1 cut(s) | 4377 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1670, 3402 |
| BsiHKCI | CYCGRG | 3 cut(s) | 929, 3635, 4206 |
| BsiSI | CCGG | 6 cut(s) | 2081, 2436, 2620, 3636, 3703, 4291 |
| BslFI | GGGAC | 4 cut(s) | 1585, 2717, 3980, 4236 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 165, 2719, 2861, 2962, 3541, 3642, 3860, 4372 |
| BsmAI | GTCTC | 3 cut(s) | 932, 1916, 2054 |
| BsmBI | CGTCTC | 1 cut(s) | 1916 |
| BsmFI | GGGAC | 4 cut(s) | 1585, 2717, 3980, 4236 |
| BsmI | GAATGC | 5 cut(s) | 760, 868, 1628, 1852, 3331 |
| BsnI | GGCC | 9 cut(s) | 13, 527, 1043, 1226, 1868, 2926, 3427, 3489, 3534 |
| BsoBI | CYCGRG | 3 cut(s) | 929, 3635, 4206 |
| Bsp119I | TTCGAA | 3 cut(s) | 1307, 3228, 4337 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1670, 1678, 3184, 3294, 3402 |
| Bsp13I | TCCGGA | 1 cut(s) | 2080 |
| BspACI | CCGC | 5 cut(s) | 278, 1394, 3415, 3542, 4373 |
| BspANI | GGCC | 9 cut(s) | 13, 527, 1043, 1226, 1868, 2926, 3427, 3489, 3534 |
| BspCNI | CTCAG | 5 cut(s) | 1765, 2320, 2464, 3662, 3994 |
| BspDI | ATCGAT | 1 cut(s) | 999 |
| BspEI | TCCGGA | 1 cut(s) | 2080 |
| BspHI | TCATGA | 6 cut(s) | 775, 883, 991, 1174, 1357, 3796 |
| BspLI | GGNNCC | 8 cut(s) | 1677, 2085, 2392, 2927, 3181, 3613, 3701, 4178 |
| BspMI | ACCTGC | 2 cut(s) | 3160, 3458 |
| BspPI | GGATC | 3 cut(s) | 2704, 3941, 4067 |
| BspQI | GCTCTTC | 2 cut(s) | 654, 3774 |
| BspT104I | TTCGAA | 3 cut(s) | 1307, 3228, 4337 |
| BspT107I | GGYRCC | 2 cut(s) | 1675, 3611 |
| BsrDI | GCAATG | 5 cut(s) | 2161, 3310, 3482, 3526, 4101 |
| BsrFI | RCCGGY | 2 cut(s) | 2619, 4290 |
| BssAI | RCCGGY | 2 cut(s) | 2619, 4290 |
| BssECI | CCNNGG | 7 cut(s) | 578, 2241, 2713, 3120, 3454, 3564, 3635 |
| BssSI | CACGAG | 1 cut(s) | 1669 |
| BssT1I | CCWWGG | 2 cut(s) | 3454, 3564 |
| Bst2BI | CACGAG | 1 cut(s) | 1669 |
| Bst2UI | CCWGG | 7 cut(s) | 131, 579, 2243, 2715, 2856, 3121, 3267 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3628, 3878 |
| BstBAI | YACGTR | 1 cut(s) | 2945 |
| BstBI | TTCGAA | 3 cut(s) | 1307, 3228, 4337 |
| BstC8I | GCNNGC | 7 cut(s) | 1987, 2850, 2924, 3052, 3561, 4197, 4292 |
| BstDEI | CTNAG | 8 cut(s) | 1755, 1773, 1863, 2328, 2451, 2776, 3649, 3981 |
| BstEII | GGTNACC | 1 cut(s) | 1692 |
| BstH2I | RGCGCY | 1 cut(s) | 3787 |
| BstHHI | GCGC | 2 cut(s) | 3357, 3786 |
| BstMAI | GTCTC | 3 cut(s) | 932, 1916, 2054 |
| BstMCI | CGRYCG | 1 cut(s) | 4377 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 913, 1712, 3507, 3516, 3628, 3878, 4100 |
| BstNI | CCWGG | 7 cut(s) | 131, 579, 2243, 2715, 2856, 3121, 3267 |
| BstNSI | RCATGY | 3 cut(s) | 2852, 3602, 3973 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3312 |
| BstPI | GGTNACC | 1 cut(s) | 1692 |
| BstSFI | CTRYAG | 2 cut(s) | 1698, 3662 |
| BstSLI | GKGCMC | 2 cut(s) | 1678, 3294 |
| BstV1I | GCAGC | 4 cut(s) | 804, 1771, 3059, 4420 |
| BstV2I | GAAGAC | 3 cut(s) | 2055, 2619, 4231 |
| Bsu15I | ATCGAT | 1 cut(s) | 999 |
| BsuI | GTATCC | 1 cut(s) | 2501 |
| BsuRI | GGCC | 9 cut(s) | 13, 527, 1043, 1226, 1868, 2926, 3427, 3489, 3534 |
| BsuTUI | ATCGAT | 1 cut(s) | 999 |
| BtsI | GCAGTG | 1 cut(s) | 1456 |
| BveI | ACCTGC | 2 cut(s) | 3160, 3458 |
| Cac8I | GCNNGC | 7 cut(s) | 1987, 2850, 2924, 3052, 3561, 4197, 4292 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1946, 2327 |
| CciI | TCATGA | 6 cut(s) | 775, 883, 991, 1174, 1357, 3796 |
| CfoI | GCGC | 2 cut(s) | 3357, 3786 |
| Cfr10I | RCCGGY | 2 cut(s) | 2619, 4290 |
| Cfr13I | GGNCC | 4 cut(s) | 123, 2925, 3435, 3699 |
| Cfr9I | CCCGGG | 1 cut(s) | 3635 |
| ClaI | ATCGAT | 1 cut(s) | 999 |
| CseI | GACGC | 1 cut(s) | 1933 |
| Csp6I | GTAC | 7 cut(s) | 1935, 2558, 2734, 2899, 2946, 3372, 4157 |
| CspAI | ACCGGT | 1 cut(s) | 2619 |
| CviQI | GTAC | 7 cut(s) | 1935, 2558, 2734, 2899, 2946, 3372, 4157 |
| DdeI | CTNAG | 8 cut(s) | 1755, 1773, 1863, 2328, 2451, 2776, 3649, 3981 |
| DraI | TTTAAA | 1 cut(s) | 3336 |
| DraIII | CACNNNGTG | 1 cut(s) | 2700 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2620 |
| EaeI | YGGCCR | 2 cut(s) | 1041, 1224 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2620 |
| Ecl136II | GAGCTC | 1 cut(s) | 3400 |
| Eco130I | CCWWGG | 2 cut(s) | 3454, 3564 |
| Eco147I | AGGCCT | 1 cut(s) | 13 |
| Eco24I | GRGCYC | 2 cut(s) | 3184, 3402 |
| Eco32I | GATATC | 1 cut(s) | 997 |
| Eco47I | GGWCC | 3 cut(s) | 123, 3435, 3699 |
| Eco47III | AGCGCT | 1 cut(s) | 3785 |
| Eco53kI | GAGCTC | 1 cut(s) | 3400 |
| Eco57I | CTGAAG | 8 cut(s) | 1923, 2028, 2400, 2624, 2709, 3134, 3468, 3798 |
| Eco88I | CYCGRG | 3 cut(s) | 929, 3635, 4206 |
| Eco91I | GGTNACC | 1 cut(s) | 1692 |
| EcoICRI | GAGCTC | 1 cut(s) | 3400 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2925, 3699 |
| EcoO65I | GGTNACC | 1 cut(s) | 1692 |
| EcoRII | CCWGG | 7 cut(s) | 129, 577, 2241, 2713, 2854, 3119, 3265 |
| EcoRV | GATATC | 1 cut(s) | 997 |
| EcoT14I | CCWWGG | 2 cut(s) | 3454, 3564 |
| EcoT22I | ATGCAT | 1 cut(s) | 2840 |
| EcoT38I | GRGCYC | 2 cut(s) | 3184, 3402 |
| ErhI | CCWWGG | 2 cut(s) | 3454, 3564 |
| Esp3I | CGTCTC | 1 cut(s) | 1916 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3615, 3647, 4223, 4255 |
| FaqI | GGGAC | 4 cut(s) | 1585, 2717, 3980, 4236 |
| FauI | CCCGC | 1 cut(s) | 1387 |
| FauNDI | CATATG | 5 cut(s) | 147, 1837, 2065, 2457, 2513 |
| FbaI | TGATCA | 2 cut(s) | 193, 3087 |
| Fnu4HI | GCNGC | 5 cut(s) | 279, 793, 1760, 3048, 4409 |
| FriOI | GRGCYC | 2 cut(s) | 3184, 3402 |
| Fsp4HI | GCNGC | 5 cut(s) | 279, 793, 1760, 3048, 4409 |
| FspBI | CTAG | 4 cut(s) | 165, 1530, 2339, 3455 |
| GlaI | GCGC | 2 cut(s) | 3356, 3785 |
| GluI | GCNGC | 5 cut(s) | 279, 793, 1760, 3048, 4409 |
| GsaI | CCCAGC | 3 cut(s) | 2595, 3528, 4266 |
| GsuI | CTGGAG | 1 cut(s) | 361 |
| HaeII | RGCGCY | 1 cut(s) | 3787 |
| HaeIII | GGCC | 9 cut(s) | 13, 527, 1043, 1226, 1868, 2926, 3427, 3489, 3534 |
| HapII | CCGG | 6 cut(s) | 2081, 2436, 2620, 3636, 3703, 4291 |
| HgaI | GACGC | 1 cut(s) | 1933 |
| HhaI | GCGC | 2 cut(s) | 3357, 3786 |
| Hin6I | GCGC | 2 cut(s) | 3355, 3784 |
| HinP1I | GCGC | 2 cut(s) | 3355, 3784 |
| HpaII | CCGG | 6 cut(s) | 2081, 2436, 2620, 3636, 3703, 4291 |
| Hpy166II | GTNNAC | 3 cut(s) | 591, 1967, 3604 |
| Hpy8I | GTNNAC | 3 cut(s) | 591, 1967, 3604 |
| HpyCH4IV | ACGT | 3 cut(s) | 61, 1582, 2944 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 913, 1712, 3507, 3516, 3628, 3878, 4100 |
| HpyF3I | CTNAG | 8 cut(s) | 1755, 1773, 1863, 2328, 2451, 2776, 3649, 3981 |
| HpySE526I | ACGT | 3 cut(s) | 61, 1582, 2944 |
| HspAI | GCGC | 2 cut(s) | 3355, 3784 |
| Kpn2I | TCCGGA | 1 cut(s) | 2080 |
| KroI | GCCGGC | 1 cut(s) | 4290 |
| KroNI | GCCGGC | 1 cut(s) | 4292 |
| Ksp22I | TGATCA | 2 cut(s) | 193, 3087 |
| LguI | GCTCTTC | 2 cut(s) | 654, 3774 |
| LmnI | GCTCC | 9 cut(s) | 2113, 2257, 2575, 2944, 2958, 3179, 3397, 3458, 4142 |
| Lsp1109I | GCAGC | 4 cut(s) | 804, 1771, 3059, 4420 |
| LweI | GCATC | 7 cut(s) | 1873, 2545, 2825, 3147, 4024, 4315, 4342 |
| MaeI | CTAG | 4 cut(s) | 165, 1530, 2339, 3455 |
| MaeII | ACGT | 3 cut(s) | 61, 1582, 2944 |
| MaeIII | GTNAC | 9 cut(s) | 509, 557, 1692, 2214, 2446, 3314, 3748, 3803, 3818 |
| MhlI | GDGCHC | 5 cut(s) | 1670, 1678, 3184, 3294, 3402 |
| MlyI | GAGTC | 8 cut(s) | 103, 164, 596, 1520, 2417, 2863, 3322, 3873 |
| MmeI | TCCRAC | 4 cut(s) | 150, 1558, 2784, 4120 |
| Mph1103I | ATGCAT | 1 cut(s) | 2840 |
| MroI | TCCGGA | 1 cut(s) | 2080 |
| MroNI | GCCGGC | 1 cut(s) | 4290 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1731, 3252, 3719 |
| MslI | CAYNNNNRTG | 3 cut(s) | 150, 2745, 3801 |
| MspI | CCGG | 6 cut(s) | 2081, 2436, 2620, 3636, 3703, 4291 |
| Mva1269I | GAATGC | 5 cut(s) | 760, 868, 1628, 1852, 3331 |
| MvaI | CCWGG | 7 cut(s) | 131, 579, 2243, 2715, 2856, 3121, 3267 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 913, 1712, 3507, 3516, 3628, 3878, 4100 |
| NaeI | GCCGGC | 1 cut(s) | 4292 |
| NciI | CCSGG | 4 cut(s) | 2436, 3636, 3637, 3703 |
| NdeI | CATATG | 5 cut(s) | 147, 1837, 2065, 2457, 2513 |
| NgoMIV | GCCGGC | 1 cut(s) | 4290 |
| NlaIV | GGNNCC | 8 cut(s) | 1677, 2085, 2392, 2927, 3181, 3613, 3701, 4178 |
| NmuCI | GTSAC | 4 cut(s) | 557, 3314, 3803, 3818 |
| NsiI | ATGCAT | 1 cut(s) | 2840 |
| NspI | RCATGY | 3 cut(s) | 2852, 3602, 3973 |
| NspV | TTCGAA | 3 cut(s) | 1307, 3228, 4337 |
| PaeI | GCATGC | 1 cut(s) | 2852 |
| PagI | TCATGA | 6 cut(s) | 775, 883, 991, 1174, 1357, 3796 |
| PceI | AGGCCT | 1 cut(s) | 13 |
| PciSI | GCTCTTC | 2 cut(s) | 654, 3774 |
| PctI | GAATGC | 5 cut(s) | 760, 868, 1628, 1852, 3331 |
| PdiI | GCCGGC | 1 cut(s) | 4292 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1731, 3252, 3719 |
| PinAI | ACCGGT | 1 cut(s) | 2619 |
| PkrI | GCNGC | 5 cut(s) | 280, 794, 1761, 3049, 4410 |
| PleI | GAGTC | 8 cut(s) | 102, 163, 595, 1519, 2417, 2863, 3321, 3872 |
| PpsI | GAGTC | 8 cut(s) | 102, 163, 595, 1519, 2417, 2863, 3321, 3872 |
| Ppu21I | YACGTR | 1 cut(s) | 2945 |
| PpuMI | RGGWCCY | 1 cut(s) | 3699 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3312 |
| PshBI | ATTAAT | 4 cut(s) | 954, 1182, 1365, 2034 |
| Psp124BI | GAGCTC | 1 cut(s) | 3402 |
| Psp1406I | AACGTT | 1 cut(s) | 61 |
| Psp5II | RGGWCCY | 1 cut(s) | 3699 |
| Psp6I | CCWGG | 7 cut(s) | 129, 577, 2241, 2713, 2854, 3119, 3265 |
| PspEI | GGTNACC | 1 cut(s) | 1692 |
| PspFI | CCCAGC | 3 cut(s) | 2591, 3524, 4262 |
| PspGI | CCWGG | 7 cut(s) | 129, 577, 2241, 2713, 2854, 3119, 3265 |
| PspN4I | GGNNCC | 8 cut(s) | 1677, 2085, 2392, 2927, 3181, 3613, 3701, 4178 |
| PspPI | GGNCC | 4 cut(s) | 123, 2925, 3435, 3699 |
| PspPPI | RGGWCCY | 1 cut(s) | 3699 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1946, 2327 |
| RsaI | GTAC | 7 cut(s) | 1936, 2559, 2735, 2900, 2947, 3373, 4158 |
| RsaNI | GTAC | 7 cut(s) | 1935, 2558, 2734, 2899, 2946, 3372, 4157 |
| RseI | CAYNNNNRTG | 3 cut(s) | 150, 2745, 3801 |
| SacI | GAGCTC | 1 cut(s) | 3402 |
| SapI | GCTCTTC | 2 cut(s) | 654, 3774 |
| SatI | GCNGC | 5 cut(s) | 279, 793, 1760, 3048, 4409 |
| Sau96I | GGNCC | 4 cut(s) | 123, 2925, 3435, 3699 |
| SchI | GAGTC | 8 cut(s) | 103, 164, 596, 1520, 2417, 2863, 3322, 3873 |
| SduI | GDGCHC | 5 cut(s) | 1670, 1678, 3184, 3294, 3402 |
| SfaNI | GCATC | 7 cut(s) | 1873, 2545, 2825, 3147, 4024, 4315, 4342 |
| SfcI | CTRYAG | 2 cut(s) | 1698, 3662 |
| SfuI | TTCGAA | 3 cut(s) | 1307, 3228, 4337 |
| SinI | GGWCC | 3 cut(s) | 123, 3435, 3699 |
| SmaI | CCCGGG | 1 cut(s) | 3637 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 150, 2745, 3801 |
| SmlI | CTYRAG | 2 cut(s) | 237, 4421 |
| SmoI | CTYRAG | 2 cut(s) | 237, 4421 |
| SphI | GCATGC | 1 cut(s) | 2852 |
| SseBI | AGGCCT | 1 cut(s) | 13 |
| SsiI | CCGC | 5 cut(s) | 278, 1394, 3415, 3542, 4373 |
| SspMI | CTAG | 4 cut(s) | 165, 1530, 2339, 3455 |
| SstI | GAGCTC | 1 cut(s) | 3402 |
| StuI | AGGCCT | 1 cut(s) | 13 |
| StyI | CCWWGG | 2 cut(s) | 3454, 3564 |
| TaiI | ACGT | 3 cut(s) | 64, 1585, 2947 |
| TatI | WGTACW | 1 cut(s) | 4156 |
| TauI | GCSGC | 1 cut(s) | 281 |
| TseFI | GTSAC | 4 cut(s) | 557, 3314, 3803, 3818 |
| TseI | GCWGC | 4 cut(s) | 792, 1759, 3047, 4408 |
| Tsp45I | GTSAC | 4 cut(s) | 557, 3314, 3803, 3818 |
| TspGWI | ACGGA | 3 cut(s) | 960, 1699, 2009 |
| TspMI | CCCGGG | 1 cut(s) | 3635 |
| VpaK11BI | GGWCC | 3 cut(s) | 123, 3435, 3699 |
| VspI | ATTAAT | 4 cut(s) | 954, 1182, 1365, 2034 |
| XapI | RAATTY | 5 cut(s) | 1823, 2759, 2905, 3260, 3492 |
| XceI | RCATGY | 3 cut(s) | 2852, 3602, 3973 |
| XmaI | CCCGGG | 1 cut(s) | 3635 |
| XmaJI | CCTAGG | 1 cut(s) | 3454 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1731, 3252, 3719 |
| XspI | CTAG | 4 cut(s) | 165, 1530, 2339, 3455 |
| Zsp2I | ATGCAT | 1 cut(s) | 2840 |