DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 26 - 133 | 4e-10 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 5, 379 |
| AcoI | YGGCCR | 1 cut(s) | 364 |
| AcsI | RAATTY | 1 cut(s) | 158 |
| AfaI | GTAC | 1 cut(s) | 104 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 75 |
| AgsI | TTSAA | 3 cut(s) | 419, 437, 521 |
| AluBI | AGCT | 1 cut(s) | 120 |
| AluI | AGCT | 1 cut(s) | 120 |
| Alw21I | GWGCWC | 1 cut(s) | 135 |
| Alw26I | GTCTC | 1 cut(s) | 545 |
| AlwI | GGATC | 2 cut(s) | 5, 379 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 554 |
| AoxI | GGCC | 1 cut(s) | 364 |
| ApeKI | GCWGC | 1 cut(s) | 26 |
| ApoI | RAATTY | 1 cut(s) | 158 |
| AspLEI | GCGC | 1 cut(s) | 492 |
| AsuHPI | GGTGA | 1 cut(s) | 416 |
| BalI | TGGCCA | 1 cut(s) | 366 |
| BbsI | GAAGAC | 1 cut(s) | 153 |
| Bbv12I | GWGCWC | 1 cut(s) | 135 |
| BbvI | GCAGC | 1 cut(s) | 38 |
| BccI | CCATC | 2 cut(s) | 86, 250 |
| BclI | TGATCA | 2 cut(s) | 3, 229 |
| BcoDI | GTCTC | 1 cut(s) | 545 |
| BfoI | RGCGCY | 1 cut(s) | 493 |
| BisI | GCNGC | 1 cut(s) | 27 |
| BlsI | GCNGC | 1 cut(s) | 28 |
| BmiI | GGNNCC | 1 cut(s) | 80 |
| BmsI | GCATC | 1 cut(s) | 294 |
| BpiI | GAAGAC | 1 cut(s) | 153 |
| Bsa29I | ATCGAT | 1 cut(s) | 9 |
| BsaBI | GATNNNNATC | 2 cut(s) | 234, 389 |
| BsaWI | WCCGGW | 1 cut(s) | 75 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 75 |
| Bse1I | ACTGG | 1 cut(s) | 414 |
| Bse8I | GATNNNNATC | 2 cut(s) | 234, 389 |
| BseCI | ATCGAT | 1 cut(s) | 9 |
| BseJI | GATNNNNATC | 2 cut(s) | 234, 389 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 75 |
| BseMII | CTCAG | 1 cut(s) | 546 |
| BseNI | ACTGG | 1 cut(s) | 414 |
| BseXI | GCAGC | 1 cut(s) | 38 |
| BseYI | CCCAGC | 1 cut(s) | 116 |
| BshFI | GGCC | 1 cut(s) | 366 |
| BshVI | ATCGAT | 1 cut(s) | 9 |
| BsiHKAI | GWGCWC | 1 cut(s) | 135 |
| BsiSI | CCGG | 1 cut(s) | 76 |
| BslFI | GGGAC | 1 cut(s) | 99 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 75 |
| BsmAI | GTCTC | 1 cut(s) | 545 |
| BsmFI | GGGAC | 1 cut(s) | 99 |
| BsnI | GGCC | 1 cut(s) | 366 |
| Bsp1286I | GDGCHC | 1 cut(s) | 135 |
| Bsp143I | GATC | 4 cut(s) | 3, 10, 229, 384 |
| BspANI | GGCC | 1 cut(s) | 366 |
| BspCNI | CTCAG | 1 cut(s) | 547 |
| BspDI | ATCGAT | 1 cut(s) | 9 |
| BspHI | TCATGA | 1 cut(s) | 223 |
| BspLI | GGNNCC | 1 cut(s) | 80 |
| BspPI | GGATC | 2 cut(s) | 5, 379 |
| BsrI | ACTGG | 1 cut(s) | 414 |
| BssMI | GATC | 4 cut(s) | 3, 10, 229, 384 |
| Bst4CI | ACNGT | 3 cut(s) | 152, 247, 276 |
| Bst6I | CTCTTC | 1 cut(s) | 339 |
| BstDEI | CTNAG | 1 cut(s) | 555 |
| BstH2I | RGCGCY | 1 cut(s) | 493 |
| BstHHI | GCGC | 1 cut(s) | 492 |
| BstKTI | GATC | 4 cut(s) | 6, 13, 232, 387 |
| BstMAI | GTCTC | 1 cut(s) | 545 |
| BstMBI | GATC | 4 cut(s) | 3, 10, 229, 384 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 117, 188 |
| BstV1I | GCAGC | 1 cut(s) | 38 |
| BstV2I | GAAGAC | 1 cut(s) | 153 |
| BstX2I | RGATCY | 1 cut(s) | 384 |
| BstYI | RGATCY | 1 cut(s) | 384 |
| Bsu15I | ATCGAT | 1 cut(s) | 9 |
| BsuRI | GGCC | 1 cut(s) | 366 |
| BsuTUI | ATCGAT | 1 cut(s) | 9 |
| BtsI | GCAGTG | 2 cut(s) | 60, 474 |
| BtsIMutI | CAGTG | 5 cut(s) | 57, 60, 157, 252, 474 |
| CaiI | CAGNNNCTG | 1 cut(s) | 554 |
| CciI | TCATGA | 1 cut(s) | 223 |
| CfoI | GCGC | 1 cut(s) | 492 |
| ClaI | ATCGAT | 1 cut(s) | 9 |
| CseI | GACGC | 1 cut(s) | 438 |
| Csp6I | GTAC | 1 cut(s) | 103 |
| CviAII | CATG | 3 cut(s) | 179, 198, 224 |
| CviJI | RGCY | 6 cut(s) | 96, 111, 120, 191, 366, 566 |
| CviKI_1 | RGCY | 6 cut(s) | 96, 111, 120, 191, 366, 566 |
| CviQI | GTAC | 1 cut(s) | 103 |
| DdeI | CTNAG | 1 cut(s) | 555 |
| DpnI | GATC | 4 cut(s) | 5, 12, 231, 386 |
| DpnII | GATC | 4 cut(s) | 3, 10, 229, 384 |
| EaeI | YGGCCR | 1 cut(s) | 364 |
| Eam1104I | CTCTTC | 1 cut(s) | 339 |
| EarI | CTCTTC | 1 cut(s) | 339 |
| FaeI | CATG | 3 cut(s) | 182, 201, 227 |
| FaiI | YATR | 9 cut(s) | 41, 88, 90, 180, 199, 213, 225, 319, 402 |
| FaqI | GGGAC | 1 cut(s) | 99 |
| FatI | CATG | 3 cut(s) | 178, 197, 223 |
| FauNDI | CATATG | 1 cut(s) | 88 |
| FbaI | TGATCA | 2 cut(s) | 3, 229 |
| Fnu4HI | GCNGC | 1 cut(s) | 27 |
| Fsp4HI | GCNGC | 1 cut(s) | 27 |
| GlaI | GCGC | 1 cut(s) | 491 |
| GluI | GCNGC | 1 cut(s) | 27 |
| GsaI | CCCAGC | 1 cut(s) | 120 |
| HaeII | RGCGCY | 1 cut(s) | 493 |
| HaeIII | GGCC | 1 cut(s) | 366 |
| HapII | CCGG | 1 cut(s) | 76 |
| HgaI | GACGC | 1 cut(s) | 438 |
| HhaI | GCGC | 1 cut(s) | 492 |
| Hin1II | CATG | 3 cut(s) | 182, 201, 227 |
| Hin6I | GCGC | 1 cut(s) | 490 |
| HinP1I | GCGC | 1 cut(s) | 490 |
| HinfI | GANTC | 1 cut(s) | 250 |
| HpaII | CCGG | 1 cut(s) | 76 |
| HphI | GGTGA | 1 cut(s) | 416 |
| Hpy166II | GTNNAC | 1 cut(s) | 407 |
| Hpy188I | TCNGA | 3 cut(s) | 255, 384, 502 |
| Hpy188III | TCNNGA | 2 cut(s) | 224, 296 |
| Hpy8I | GTNNAC | 1 cut(s) | 407 |
| HpyCH4III | ACNGT | 3 cut(s) | 152, 247, 276 |
| HpyCH4IV | ACGT | 1 cut(s) | 335 |
| HpyCH4V | TGCA | 3 cut(s) | 60, 182, 479 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 117, 188 |
| HpyF3I | CTNAG | 1 cut(s) | 555 |
| HpySE526I | ACGT | 1 cut(s) | 335 |
| Hsp92II | CATG | 3 cut(s) | 182, 201, 227 |
| HspAI | GCGC | 1 cut(s) | 490 |
| Ksp22I | TGATCA | 2 cut(s) | 3, 229 |
| Kzo9I | GATC | 4 cut(s) | 3, 10, 229, 384 |
| LpnPI | CCDG | 7 cut(s) | 82, 89, 130, 281, 354, 395, 498 |
| Lsp1109I | GCAGC | 1 cut(s) | 38 |
| LweI | GCATC | 1 cut(s) | 294 |
| MaeII | ACGT | 1 cut(s) | 335 |
| MaeIII | GTNAC | 3 cut(s) | 200, 214, 336 |
| MalI | GATC | 4 cut(s) | 5, 12, 231, 386 |
| MboI | GATC | 4 cut(s) | 3, 10, 229, 384 |
| MboII | GAAGA | 2 cut(s) | 158, 356 |
| MflI | RGATCY | 1 cut(s) | 384 |
| MhlI | GDGCHC | 1 cut(s) | 135 |
| MlsI | TGGCCA | 1 cut(s) | 366 |
| MluCI | AATT | 4 cut(s) | 19, 158, 219, 432 |
| MluNI | TGGCCA | 1 cut(s) | 366 |
| MmeI | TCCRAC | 1 cut(s) | 347 |
| MnlI | CCTC | 1 cut(s) | 506 |
| Mox20I | TGGCCA | 1 cut(s) | 366 |
| MscI | TGGCCA | 1 cut(s) | 366 |
| MseI | TTAA | 1 cut(s) | 351 |
| Msp20I | TGGCCA | 1 cut(s) | 366 |
| MspA1I | CMGCKG | 1 cut(s) | 120 |
| MspI | CCGG | 1 cut(s) | 76 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 117, 188 |
| NdeI | CATATG | 1 cut(s) | 88 |
| NdeII | GATC | 4 cut(s) | 3, 10, 229, 384 |
| NlaIII | CATG | 3 cut(s) | 182, 201, 227 |
| NlaIV | GGNNCC | 1 cut(s) | 80 |
| NmuCI | GTSAC | 1 cut(s) | 214 |
| PagI | TCATGA | 1 cut(s) | 223 |
| PfeI | GAWTC | 1 cut(s) | 250 |
| PkrI | GCNGC | 1 cut(s) | 28 |
| PspFI | CCCAGC | 1 cut(s) | 116 |
| PspN4I | GGNNCC | 1 cut(s) | 80 |
| PstNI | CAGNNNCTG | 1 cut(s) | 554 |
| PsuI | RGATCY | 1 cut(s) | 384 |
| PvuII | CAGCTG | 1 cut(s) | 120 |
| RsaI | GTAC | 1 cut(s) | 104 |
| RsaNI | GTAC | 1 cut(s) | 103 |
| SaqAI | TTAA | 1 cut(s) | 351 |
| SatI | GCNGC | 1 cut(s) | 27 |
| Sau3AI | GATC | 4 cut(s) | 3, 10, 229, 384 |
| SduI | GDGCHC | 1 cut(s) | 135 |
| SetI | ASST | 3 cut(s) | 122, 338, 374 |
| SfaNI | GCATC | 1 cut(s) | 294 |
| Sse9I | AATT | 4 cut(s) | 19, 158, 219, 432 |
| TaaI | ACNGT | 3 cut(s) | 152, 247, 276 |
| TaiI | ACGT | 1 cut(s) | 338 |
| TaqI | TCGA | 1 cut(s) | 9 |
| TasI | AATT | 4 cut(s) | 19, 158, 219, 432 |
| TfiI | GAWTC | 1 cut(s) | 250 |
| Tru1I | TTAA | 1 cut(s) | 351 |
| Tru9I | TTAA | 1 cut(s) | 351 |
| TscAI | CASTG | 5 cut(s) | 57, 67, 157, 252, 481 |
| TseFI | GTSAC | 1 cut(s) | 214 |
| TseI | GCWGC | 1 cut(s) | 26 |
| Tsp45I | GTSAC | 1 cut(s) | 214 |
| TspDTI | ATGAA | 3 cut(s) | 212, 486, 532 |
| TspRI | CASTG | 5 cut(s) | 57, 67, 157, 252, 481 |
| XapI | RAATTY | 1 cut(s) | 158 |