DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 632 |
| AccI | GTMKAC | 1 cut(s) | 636 |
| AciI | CCGC | 2 cut(s) | 574, 641 |
| AcsI | RAATTY | 3 cut(s) | 584, 645, 674 |
| AdeI | CACNNNGTG | 1 cut(s) | 492 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 253 |
| AgsI | TTSAA | 8 cut(s) | 189, 211, 262, 272, 307, 533, 778, 802 |
| AjnI | CCWGG | 2 cut(s) | 402, 685 |
| AluBI | AGCT | 4 cut(s) | 8, 527, 570, 742 |
| AluI | AGCT | 4 cut(s) | 8, 527, 570, 742 |
| Alw21I | GWGCWC | 2 cut(s) | 10, 744 |
| Ama87I | CYCGRG | 1 cut(s) | 9 |
| AoxI | GGCC | 1 cut(s) | 29 |
| ApeKI | GCWGC | 1 cut(s) | 180 |
| ApoI | RAATTY | 3 cut(s) | 584, 645, 674 |
| AspS9I | GGNCC | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 3 cut(s) | 104, 276, 701 |
| AvaI | CYCGRG | 1 cut(s) | 9 |
| BanII | GRGCYC | 2 cut(s) | 10, 744 |
| Bbv12I | GWGCWC | 2 cut(s) | 10, 744 |
| BbvI | GCAGC | 1 cut(s) | 167 |
| BccI | CCATC | 1 cut(s) | 53 |
| BciT130I | CCWGG | 2 cut(s) | 404, 687 |
| BclI | TGATCA | 1 cut(s) | 220 |
| BfuAI | ACCTGC | 1 cut(s) | 632 |
| BisI | GCNGC | 1 cut(s) | 181 |
| BlsI | GCNGC | 1 cut(s) | 182 |
| Bme1390I | CCNGG | 2 cut(s) | 404, 687 |
| BmeT110I | CYCGRG | 1 cut(s) | 9 |
| BmgT120I | GGNCC | 1 cut(s) | 30 |
| BmrFI | CCNGG | 2 cut(s) | 404, 687 |
| BmsI | GCATC | 1 cut(s) | 85 |
| BpuEI | CTTGAG | 2 cut(s) | 335, 717 |
| Bsa29I | ATCGAT | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 2 cut(s) | 402, 453 |
| BsaWI | WCCGGW | 1 cut(s) | 246 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 253 |
| Bse1I | ACTGG | 1 cut(s) | 131 |
| BseBI | CCWGG | 2 cut(s) | 404, 687 |
| BseCI | ATCGAT | 1 cut(s) | 81 |
| BseDI | CCNNGG | 2 cut(s) | 402, 453 |
| BseGI | GGATG | 2 cut(s) | 255, 481 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 253 |
| BseMII | CTCAG | 1 cut(s) | 478 |
| BseNI | ACTGG | 1 cut(s) | 131 |
| BseXI | GCAGC | 1 cut(s) | 167 |
| BshFI | GGCC | 1 cut(s) | 31 |
| BshVI | ATCGAT | 1 cut(s) | 81 |
| BsiHKAI | GWGCWC | 2 cut(s) | 10, 744 |
| BsiHKCI | CYCGRG | 1 cut(s) | 9 |
| BsiSI | CCGG | 1 cut(s) | 247 |
| BslFI | GGGAC | 1 cut(s) | 385 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 253 |
| BsmFI | GGGAC | 1 cut(s) | 385 |
| BsmI | GAATGC | 1 cut(s) | 302 |
| BsnI | GGCC | 1 cut(s) | 31 |
| BsoBI | CYCGRG | 1 cut(s) | 9 |
| Bsp1286I | GDGCHC | 2 cut(s) | 10, 744 |
| Bsp143I | GATC | 4 cut(s) | 220, 346, 549, 748 |
| BspACI | CCGC | 2 cut(s) | 574, 641 |
| BspANI | GGCC | 1 cut(s) | 31 |
| BspCNI | CTCAG | 1 cut(s) | 477 |
| BspDI | ATCGAT | 1 cut(s) | 81 |
| BspHI | TCATGA | 1 cut(s) | 223 |
| BspMI | ACCTGC | 1 cut(s) | 632 |
| BspQI | GCTCTTC | 1 cut(s) | 732 |
| BsrI | ACTGG | 1 cut(s) | 131 |
| BssECI | CCNNGG | 2 cut(s) | 402, 453 |
| BssMI | GATC | 4 cut(s) | 220, 346, 549, 748 |
| BssT1I | CCWWGG | 1 cut(s) | 453 |
| Bst2UI | CCWGG | 2 cut(s) | 404, 687 |
| Bst4CI | ACNGT | 1 cut(s) | 766 |
| Bst6I | CTCTTC | 2 cut(s) | 283, 732 |
| BstC8I | GCNNGC | 2 cut(s) | 525, 572 |
| BstDEI | CTNAG | 2 cut(s) | 464, 553 |
| BstF5I | GGATG | 2 cut(s) | 255, 481 |
| BstKTI | GATC | 4 cut(s) | 223, 349, 552, 751 |
| BstMBI | GATC | 4 cut(s) | 220, 346, 549, 748 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 14, 104 |
| BstNI | CCWGG | 2 cut(s) | 404, 687 |
| BstNSI | RCATGY | 1 cut(s) | 784 |
| BstSCI | CCNGG | 2 cut(s) | 402, 685 |
| BstV1I | GCAGC | 1 cut(s) | 167 |
| Bsu15I | ATCGAT | 1 cut(s) | 81 |
| BsuRI | GGCC | 1 cut(s) | 31 |
| BsuTUI | ATCGAT | 1 cut(s) | 81 |
| BtsCI | GGATG | 2 cut(s) | 255, 481 |
| BtsIMutI | CAGTG | 1 cut(s) | 328 |
| BveI | ACCTGC | 1 cut(s) | 632 |
| Cac8I | GCNNGC | 2 cut(s) | 525, 572 |
| CciI | TCATGA | 1 cut(s) | 223 |
| Cfr13I | GGNCC | 1 cut(s) | 30 |
| ClaI | ATCGAT | 1 cut(s) | 81 |
| CviAII | CATG | 6 cut(s) | 104, 224, 391, 628, 781, 792 |
| CviJI | RGCY | 7 cut(s) | 8, 31, 64, 527, 570, 685, 742 |
| CviKI_1 | RGCY | 7 cut(s) | 8, 31, 64, 527, 570, 685, 742 |
| DdeI | CTNAG | 2 cut(s) | 464, 553 |
| DpnI | GATC | 4 cut(s) | 222, 348, 551, 750 |
| DpnII | GATC | 4 cut(s) | 220, 346, 549, 748 |
| DraI | TTTAAA | 1 cut(s) | 721 |
| DraIII | CACNNNGTG | 1 cut(s) | 492 |
| Eam1104I | CTCTTC | 2 cut(s) | 283, 732 |
| EarI | CTCTTC | 2 cut(s) | 283, 732 |
| Ecl136II | GAGCTC | 2 cut(s) | 8, 742 |
| Eco130I | CCWWGG | 1 cut(s) | 453 |
| Eco24I | GRGCYC | 2 cut(s) | 10, 744 |
| Eco32I | GATATC | 1 cut(s) | 52 |
| Eco53kI | GAGCTC | 2 cut(s) | 8, 742 |
| Eco88I | CYCGRG | 1 cut(s) | 9 |
| EcoICRI | GAGCTC | 2 cut(s) | 8, 742 |
| EcoRI | GAATTC | 2 cut(s) | 584, 674 |
| EcoRII | CCWGG | 2 cut(s) | 402, 685 |
| EcoRV | GATATC | 1 cut(s) | 52 |
| EcoT14I | CCWWGG | 1 cut(s) | 453 |
| EcoT22I | ATGCAT | 1 cut(s) | 304 |
| EcoT38I | GRGCYC | 2 cut(s) | 10, 744 |
| ErhI | CCWWGG | 1 cut(s) | 453 |
| FaeI | CATG | 6 cut(s) | 107, 227, 394, 631, 784, 795 |
| FaqI | GGGAC | 1 cut(s) | 385 |
| FatI | CATG | 6 cut(s) | 103, 223, 390, 627, 780, 791 |
| FauI | CCCGC | 1 cut(s) | 648 |
| FbaI | TGATCA | 1 cut(s) | 220 |
| FblI | GTMKAC | 1 cut(s) | 636 |
| Fnu4HI | GCNGC | 1 cut(s) | 181 |
| FokI | GGATG | 2 cut(s) | 262, 488 |
| FriOI | GRGCYC | 2 cut(s) | 10, 744 |
| Fsp4HI | GCNGC | 1 cut(s) | 181 |
| GluI | GCNGC | 1 cut(s) | 181 |
| HaeIII | GGCC | 1 cut(s) | 31 |
| HapII | CCGG | 1 cut(s) | 247 |
| Hin1II | CATG | 6 cut(s) | 107, 227, 394, 631, 784, 795 |
| HindIII | AAGCTT | 1 cut(s) | 568 |
| HinfI | GANTC | 9 cut(s) | 119, 275, 289, 398, 434, 483, 597, 616, 703 |
| HpaII | CCGG | 1 cut(s) | 247 |
| HphI | GGTGA | 3 cut(s) | 104, 276, 701 |
| Hpy166II | GTNNAC | 1 cut(s) | 637 |
| Hpy188I | TCNGA | 3 cut(s) | 351, 360, 772 |
| Hpy188III | TCNNGA | 6 cut(s) | 189, 224, 272, 466, 609, 734 |
| Hpy8I | GTNNAC | 1 cut(s) | 637 |
| HpyAV | CCTTC | 1 cut(s) | 149 |
| HpyCH4III | ACNGT | 1 cut(s) | 766 |
| HpyCH4IV | ACGT | 1 cut(s) | 804 |
| HpyCH4V | TGCA | 3 cut(s) | 302, 523, 627 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 14, 104 |
| HpyF3I | CTNAG | 2 cut(s) | 464, 553 |
| HpySE526I | ACGT | 1 cut(s) | 804 |
| Hsp92II | CATG | 6 cut(s) | 107, 227, 394, 631, 784, 795 |
| Ksp22I | TGATCA | 1 cut(s) | 220 |
| Kzo9I | GATC | 4 cut(s) | 220, 346, 549, 748 |
| LguI | GCTCTTC | 1 cut(s) | 732 |
| Lsp1109I | GCAGC | 1 cut(s) | 167 |
| LweI | GCATC | 1 cut(s) | 85 |
| MaeII | ACGT | 1 cut(s) | 804 |
| MaeIII | GTNAC | 2 cut(s) | 136, 689 |
| MalI | GATC | 4 cut(s) | 222, 348, 551, 750 |
| MboI | GATC | 4 cut(s) | 220, 346, 549, 748 |
| MboII | GAAGA | 3 cut(s) | 270, 356, 749 |
| MhlI | GDGCHC | 2 cut(s) | 10, 744 |
| MluCI | AATT | 6 cut(s) | 111, 512, 584, 645, 674, 773 |
| MlyI | GAGTC | 2 cut(s) | 269, 407 |
| MmeI | TCCRAC | 1 cut(s) | 613 |
| MnlI | CCTC | 9 cut(s) | 21, 145, 220, 245, 292, 320, 408, 466, 660 |
| Mph1103I | ATGCAT | 1 cut(s) | 304 |
| MseI | TTAA | 3 cut(s) | 243, 720, 786 |
| MspI | CCGG | 1 cut(s) | 247 |
| MspR9I | CCNGG | 2 cut(s) | 404, 687 |
| Mva1269I | GAATGC | 1 cut(s) | 302 |
| MvaI | CCWGG | 2 cut(s) | 404, 687 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 14, 104 |
| NdeII | GATC | 4 cut(s) | 220, 346, 549, 748 |
| NlaIII | CATG | 6 cut(s) | 107, 227, 394, 631, 784, 795 |
| NmuCI | GTSAC | 1 cut(s) | 689 |
| NsiI | ATGCAT | 1 cut(s) | 304 |
| NspI | RCATGY | 1 cut(s) | 784 |
| PagI | TCATGA | 1 cut(s) | 223 |
| PciSI | GCTCTTC | 1 cut(s) | 732 |
| PctI | GAATGC | 1 cut(s) | 302 |
| PfeI | GAWTC | 7 cut(s) | 119, 289, 434, 483, 597, 616, 703 |
| PkrI | GCNGC | 1 cut(s) | 182 |
| PleI | GAGTC | 2 cut(s) | 269, 406 |
| PpsI | GAGTC | 2 cut(s) | 269, 406 |
| Psp124BI | GAGCTC | 2 cut(s) | 10, 744 |
| Psp6I | CCWGG | 2 cut(s) | 402, 685 |
| PspGI | CCWGG | 2 cut(s) | 402, 685 |
| PspPI | GGNCC | 1 cut(s) | 30 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 604, 636 |
| SacI | GAGCTC | 2 cut(s) | 10, 744 |
| SapI | GCTCTTC | 1 cut(s) | 732 |
| SaqAI | TTAA | 3 cut(s) | 243, 720, 786 |
| SatI | GCNGC | 1 cut(s) | 181 |
| Sau3AI | GATC | 4 cut(s) | 220, 346, 549, 748 |
| Sau96I | GGNCC | 1 cut(s) | 30 |
| SchI | GAGTC | 2 cut(s) | 269, 407 |
| ScrFI | CCNGG | 2 cut(s) | 404, 687 |
| SduI | GDGCHC | 2 cut(s) | 10, 744 |
| SfaNI | GCATC | 1 cut(s) | 85 |
| SmlI | CTYRAG | 2 cut(s) | 314, 732 |
| SmoI | CTYRAG | 2 cut(s) | 314, 732 |
| Sse9I | AATT | 6 cut(s) | 111, 512, 584, 645, 674, 773 |
| SsiI | CCGC | 2 cut(s) | 574, 641 |
| SstI | GAGCTC | 2 cut(s) | 10, 744 |
| StyD4I | CCNGG | 2 cut(s) | 402, 685 |
| StyI | CCWWGG | 1 cut(s) | 453 |
| TaaI | ACNGT | 1 cut(s) | 766 |
| TaiI | ACGT | 1 cut(s) | 807 |
| TaqI | TCGA | 3 cut(s) | 42, 81, 751 |
| TasI | AATT | 6 cut(s) | 111, 512, 584, 645, 674, 773 |
| TfiI | GAWTC | 7 cut(s) | 119, 289, 434, 483, 597, 616, 703 |
| Tru1I | TTAA | 3 cut(s) | 243, 720, 786 |
| Tru9I | TTAA | 3 cut(s) | 243, 720, 786 |
| TscAI | CASTG | 1 cut(s) | 328 |
| TseFI | GTSAC | 1 cut(s) | 689 |
| TseI | GCWGC | 1 cut(s) | 180 |
| Tsp45I | GTSAC | 1 cut(s) | 689 |
| TspDTI | ATGAA | 3 cut(s) | 56, 132, 687 |
| TspGWI | ACGGA | 1 cut(s) | 269 |
| TspRI | CASTG | 1 cut(s) | 328 |
| XapI | RAATTY | 3 cut(s) | 584, 645, 674 |
| XceI | RCATGY | 1 cut(s) | 784 |
| XmiI | GTMKAC | 1 cut(s) | 636 |
| Zsp2I | ATGCAT | 1 cut(s) | 304 |