DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Thioredoxin | PF00085 | 340 - 394 | 5.6e-09 | Thioredoxin |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 135 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1145 |
| AatII | GACGTC | 1 cut(s) | 1035 |
| AccB1I | GGYRCC | 2 cut(s) | 4, 52 |
| AccI | GTMKAC | 1 cut(s) | 1137 |
| AclWI | GGATC | 2 cut(s) | 467, 480 |
| AcoI | YGGCCR | 1 cut(s) | 811 |
| AcsI | RAATTY | 1 cut(s) | 384 |
| AcuI | CTGAAG | 3 cut(s) | 602, 634, 1064 |
| AcvI | CACGTG | 1 cut(s) | 337 |
| AcyI | GRCGYC | 4 cut(s) | 5, 53, 331, 1032 |
| AfaI | GTAC | 2 cut(s) | 341, 548 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1048 |
| AflIII | ACRYGT | 1 cut(s) | 336 |
| AgsI | TTSAA | 7 cut(s) | 618, 687, 802, 820, 942, 991, 1121 |
| AluBI | AGCT | 8 cut(s) | 105, 419, 512, 869, 950, 985, 1063, 1168 |
| AluI | AGCT | 8 cut(s) | 105, 419, 512, 869, 950, 985, 1063, 1168 |
| Alw21I | GWGCWC | 2 cut(s) | 987, 1176 |
| AlwI | GGATC | 2 cut(s) | 467, 480 |
| Ama87I | CYCGRG | 1 cut(s) | 668 |
| AoxI | GGCC | 2 cut(s) | 317, 811 |
| ApeKI | GCWGC | 3 cut(s) | 125, 1196, 1205 |
| ApoI | RAATTY | 1 cut(s) | 384 |
| AseI | ATTAAT | 1 cut(s) | 701 |
| AspLEI | GCGC | 2 cut(s) | 7, 55 |
| AsuC2I | CCSGG | 1 cut(s) | 1028 |
| AsuHPI | GGTGA | 3 cut(s) | 107, 523, 885 |
| AvaI | CYCGRG | 1 cut(s) | 668 |
| BalI | TGGCCA | 1 cut(s) | 813 |
| BamHI | GGATCC | 1 cut(s) | 472 |
| BanI | GGYRCC | 2 cut(s) | 4, 52 |
| BanII | GRGCYC | 1 cut(s) | 987 |
| BbrPI | CACGTG | 1 cut(s) | 337 |
| BbsI | GAAGAC | 1 cut(s) | 1028 |
| Bbv12I | GWGCWC | 2 cut(s) | 987, 1176 |
| BbvCI | CCTCAGC | 1 cut(s) | 1077 |
| BbvI | GCAGC | 3 cut(s) | 112, 1183, 1192 |
| BccI | CCATC | 4 cut(s) | 537, 898, 898, 1042 |
| BceAI | ACGGC | 1 cut(s) | 640 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1117, 1151 |
| BclI | TGATCA | 4 cut(s) | 97, 181, 238, 528 |
| BcnI | CCSGG | 1 cut(s) | 1028 |
| BfmI | CTRYAG | 3 cut(s) | 201, 435, 495 |
| BfoI | RGCGCY | 2 cut(s) | 8, 56 |
| BisI | GCNGC | 3 cut(s) | 126, 1197, 1206 |
| BlpI | GCTNAGC | 1 cut(s) | 106 |
| BlsI | GCNGC | 3 cut(s) | 127, 1198, 1207 |
| Bme1390I | CCNGG | 1 cut(s) | 1028 |
| BmeT110I | CYCGRG | 1 cut(s) | 668 |
| BmiI | GGNNCC | 3 cut(s) | 6, 54, 474 |
| BmrFI | CCNGG | 1 cut(s) | 1028 |
| BmrI | ACTGGG | 1 cut(s) | 1093 |
| BmsI | GCATC | 5 cut(s) | 206, 282, 673, 1198, 1223 |
| BmuI | ACTGGG | 1 cut(s) | 1093 |
| BpiI | GAAGAC | 1 cut(s) | 1028 |
| BpmI | CTGGAG | 2 cut(s) | 449, 771 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1077 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 106 |
| BpuMI | CCSGG | 1 cut(s) | 1028 |
| BsaAI | YACGTR | 1 cut(s) | 337 |
| BsaHI | GRCGYC | 4 cut(s) | 5, 53, 331, 1032 |
| BsaJI | CCNNGG | 3 cut(s) | 14, 62, 1026 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 593, 623 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1048 |
| Bse1I | ACTGG | 4 cut(s) | 286, 432, 474, 1088 |
| BseDI | CCNNGG | 3 cut(s) | 14, 62, 1026 |
| BseGI | GGATG | 5 cut(s) | 24, 72, 548, 882, 1057 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1048 |
| BseMII | CTCAG | 3 cut(s) | 120, 989, 1068 |
| BseNI | ACTGG | 4 cut(s) | 286, 432, 474, 1088 |
| BseXI | GCAGC | 3 cut(s) | 112, 1183, 1192 |
| BsgI | GTGCAG | 1 cut(s) | 621 |
| BshFI | GGCC | 2 cut(s) | 319, 813 |
| BshNI | GGYRCC | 2 cut(s) | 4, 52 |
| BsiHKAI | GWGCWC | 2 cut(s) | 987, 1176 |
| BsiHKCI | CYCGRG | 1 cut(s) | 668 |
| BsiSI | CCGG | 1 cut(s) | 1028 |
| BslFI | GGGAC | 1 cut(s) | 282 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1048 |
| BsmFI | GGGAC | 1 cut(s) | 282 |
| BsnI | GGCC | 2 cut(s) | 319, 813 |
| BsoBI | CYCGRG | 1 cut(s) | 668 |
| Bsp1286I | GDGCHC | 2 cut(s) | 987, 1176 |
| Bsp1407I | TGTACA | 1 cut(s) | 339 |
| Bsp143I | GATC | 6 cut(s) | 97, 181, 238, 472, 528, 753 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 106 |
| BspANI | GGCC | 2 cut(s) | 319, 813 |
| BspCNI | CTCAG | 3 cut(s) | 119, 988, 1069 |
| BspLI | GGNNCC | 3 cut(s) | 6, 54, 474 |
| BspPI | GGATC | 2 cut(s) | 467, 480 |
| BspQI | GCTCTTC | 1 cut(s) | 992 |
| BspT107I | GGYRCC | 2 cut(s) | 4, 52 |
| BsrGI | TGTACA | 1 cut(s) | 339 |
| BsrI | ACTGG | 4 cut(s) | 286, 432, 474, 1088 |
| BssECI | CCNNGG | 3 cut(s) | 14, 62, 1026 |
| BssMI | GATC | 6 cut(s) | 97, 181, 238, 472, 528, 753 |
| BssNI | GRCGYC | 4 cut(s) | 5, 53, 331, 1032 |
| BssT1I | CCWWGG | 2 cut(s) | 14, 62 |
| Bst4CI | ACNGT | 2 cut(s) | 451, 499 |
| Bst6I | CTCTTC | 1 cut(s) | 992 |
| BstACI | GRCGYC | 4 cut(s) | 5, 53, 331, 1032 |
| BstAUI | TGTACA | 1 cut(s) | 339 |
| BstBAI | YACGTR | 1 cut(s) | 337 |
| BstC8I | GCNNGC | 1 cut(s) | 559 |
| BstDEI | CTNAG | 7 cut(s) | 40, 88, 106, 975, 1077, 1155, 1227 |
| BstF5I | GGATG | 5 cut(s) | 24, 72, 548, 882, 1057 |
| BstH2I | RGCGCY | 2 cut(s) | 8, 56 |
| BstHHI | GCGC | 2 cut(s) | 7, 55 |
| BstKTI | GATC | 6 cut(s) | 100, 184, 241, 475, 531, 756 |
| BstMBI | GATC | 6 cut(s) | 97, 181, 238, 472, 528, 753 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 203, 567, 1202, 1205, 1211 |
| BstSCI | CCNGG | 1 cut(s) | 1026 |
| BstSFI | CTRYAG | 3 cut(s) | 201, 435, 495 |
| BstV1I | GCAGC | 3 cut(s) | 112, 1183, 1192 |
| BstV2I | GAAGAC | 1 cut(s) | 1028 |
| BstX2I | RGATCY | 1 cut(s) | 472 |
| BstYI | RGATCY | 1 cut(s) | 472 |
| BsuRI | GGCC | 2 cut(s) | 319, 813 |
| BtsCI | GGATG | 5 cut(s) | 24, 72, 548, 882, 1057 |
| BtsIMutI | CAGTG | 1 cut(s) | 1156 |
| Cac8I | GCNNGC | 1 cut(s) | 559 |
| CfoI | GCGC | 2 cut(s) | 7, 55 |
| CseI | GACGC | 2 cut(s) | 279, 339 |
| Csp6I | GTAC | 2 cut(s) | 340, 547 |
| CviAII | CATG | 5 cut(s) | 236, 247, 374, 565, 1129 |
| CviQI | GTAC | 2 cut(s) | 340, 547 |
| DdeI | CTNAG | 7 cut(s) | 40, 88, 106, 975, 1077, 1155, 1227 |
| DinI | GGCGCC | 2 cut(s) | 6, 54 |
| DpnI | GATC | 6 cut(s) | 99, 183, 240, 474, 530, 755 |
| DpnII | GATC | 6 cut(s) | 97, 181, 238, 472, 528, 753 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1145 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1145 |
| EaeI | YGGCCR | 1 cut(s) | 811 |
| Eam1104I | CTCTTC | 1 cut(s) | 992 |
| EarI | CTCTTC | 1 cut(s) | 992 |
| Ecl136II | GAGCTC | 1 cut(s) | 985 |
| Eco130I | CCWWGG | 2 cut(s) | 14, 62 |
| Eco147I | AGGCCT | 1 cut(s) | 319 |
| Eco24I | GRGCYC | 1 cut(s) | 987 |
| Eco53kI | GAGCTC | 1 cut(s) | 985 |
| Eco57I | CTGAAG | 3 cut(s) | 602, 634, 1064 |
| Eco72I | CACGTG | 1 cut(s) | 337 |
| Eco88I | CYCGRG | 1 cut(s) | 668 |
| EcoICRI | GAGCTC | 1 cut(s) | 985 |
| EcoT14I | CCWWGG | 2 cut(s) | 14, 62 |
| EcoT38I | GRGCYC | 1 cut(s) | 987 |
| EgeI | GGCGCC | 2 cut(s) | 6, 54 |
| EheI | GGCGCC | 2 cut(s) | 6, 54 |
| ErhI | CCWWGG | 2 cut(s) | 14, 62 |
| FaeI | CATG | 5 cut(s) | 239, 250, 377, 568, 1132 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 611, 643, 1152, 1184 |
| FaqI | GGGAC | 1 cut(s) | 282 |
| FatI | CATG | 5 cut(s) | 235, 246, 373, 564, 1128 |
| FbaI | TGATCA | 4 cut(s) | 97, 181, 238, 528 |
| FblI | GTMKAC | 1 cut(s) | 1137 |
| Fnu4HI | GCNGC | 3 cut(s) | 126, 1197, 1206 |
| FokI | GGATG | 5 cut(s) | 31, 79, 555, 869, 1064 |
| FriOI | GRGCYC | 1 cut(s) | 987 |
| Fsp4HI | GCNGC | 3 cut(s) | 126, 1197, 1206 |
| GlaI | GCGC | 2 cut(s) | 6, 54 |
| GluI | GCNGC | 3 cut(s) | 126, 1197, 1206 |
| GsuI | CTGGAG | 2 cut(s) | 449, 771 |
| HaeII | RGCGCY | 2 cut(s) | 8, 56 |
| HaeIII | GGCC | 2 cut(s) | 319, 813 |
| HapII | CCGG | 1 cut(s) | 1028 |
| HgaI | GACGC | 2 cut(s) | 279, 339 |
| HhaI | GCGC | 2 cut(s) | 7, 55 |
| Hin1I | GRCGYC | 4 cut(s) | 5, 53, 331, 1032 |
| Hin1II | CATG | 5 cut(s) | 239, 250, 377, 568, 1132 |
| Hin6I | GCGC | 2 cut(s) | 5, 53 |
| HinP1I | GCGC | 2 cut(s) | 5, 53 |
| HincII | GTYRAC | 3 cut(s) | 972, 1138, 1183 |
| HindII | GTYRAC | 3 cut(s) | 972, 1138, 1183 |
| HinfI | GANTC | 6 cut(s) | 323, 683, 732, 968, 998, 1094 |
| HpaII | CCGG | 1 cut(s) | 1028 |
| HphI | GGTGA | 3 cut(s) | 107, 523, 885 |
| Hpy166II | GTNNAC | 4 cut(s) | 340, 972, 1138, 1183 |
| Hpy188I | TCNGA | 3 cut(s) | 186, 653, 978 |
| Hpy188III | TCNNGA | 9 cut(s) | 221, 327, 476, 631, 668, 788, 802, 878, 1042 |
| Hpy8I | GTNNAC | 4 cut(s) | 340, 972, 1138, 1183 |
| Hpy99I | CGWCG | 1 cut(s) | 227 |
| HpyAV | CCTTC | 9 cut(s) | 27, 75, 86, 309, 658, 755, 948, 1063, 1118 |
| HpyCH4III | ACNGT | 2 cut(s) | 451, 499 |
| HpyCH4IV | ACGT | 2 cut(s) | 336, 1032 |
| HpyCH4V | TGCA | 9 cut(s) | 128, 166, 197, 638, 664, 955, 1208, 1214, 1220 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 203, 567, 1202, 1205, 1211 |
| HpyF3I | CTNAG | 7 cut(s) | 40, 88, 106, 975, 1077, 1155, 1227 |
| HpySE526I | ACGT | 2 cut(s) | 336, 1032 |
| Hsp92I | GRCGYC | 4 cut(s) | 5, 53, 331, 1032 |
| Hsp92II | CATG | 5 cut(s) | 239, 250, 377, 568, 1132 |
| HspAI | GCGC | 2 cut(s) | 5, 53 |
| KasI | GGCGCC | 2 cut(s) | 4, 52 |
| Ksp22I | TGATCA | 4 cut(s) | 97, 181, 238, 528 |
| Kzo9I | GATC | 6 cut(s) | 97, 181, 238, 472, 528, 753 |
| LguI | GCTCTTC | 1 cut(s) | 992 |
| LmnI | GCTCC | 2 cut(s) | 382, 416 |
| Lsp1109I | GCAGC | 3 cut(s) | 112, 1183, 1192 |
| LweI | GCATC | 5 cut(s) | 206, 282, 673, 1198, 1223 |
| MaeII | ACGT | 2 cut(s) | 336, 1032 |
| MaeIII | GTNAC | 6 cut(s) | 301, 733, 764, 907, 916, 1033 |
| MalI | GATC | 6 cut(s) | 99, 183, 240, 474, 530, 755 |
| MboI | GATC | 6 cut(s) | 97, 181, 238, 472, 528, 753 |
| MboII | GAAGA | 6 cut(s) | 770, 790, 979, 1033, 1057, 1133 |
| MfeI | CAATTG | 1 cut(s) | 291 |
| MflI | RGATCY | 1 cut(s) | 472 |
| MhlI | GDGCHC | 2 cut(s) | 987, 1176 |
| MlsI | TGGCCA | 1 cut(s) | 813 |
| MluCI | AATT | 5 cut(s) | 291, 384, 516, 815, 992 |
| MluNI | TGGCCA | 1 cut(s) | 813 |
| Mly113I | GGCGCC | 2 cut(s) | 5, 53 |
| MlyI | GAGTC | 3 cut(s) | 741, 977, 1103 |
| MmeI | TCCRAC | 2 cut(s) | 422, 910 |
| MnlI | CCTC | 7 cut(s) | 148, 289, 424, 652, 664, 795, 1072 |
| Mox20I | TGGCCA | 1 cut(s) | 813 |
| MscI | TGGCCA | 1 cut(s) | 813 |
| MseI | TTAA | 2 cut(s) | 701, 839 |
| Msp20I | TGGCCA | 1 cut(s) | 813 |
| MspI | CCGG | 1 cut(s) | 1028 |
| MspR9I | CCNGG | 1 cut(s) | 1028 |
| MunI | CAATTG | 1 cut(s) | 291 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 203, 567, 1202, 1205, 1211 |
| NarI | GGCGCC | 2 cut(s) | 5, 53 |
| NciI | CCSGG | 1 cut(s) | 1028 |
| NdeII | GATC | 6 cut(s) | 97, 181, 238, 472, 528, 753 |
| NlaIII | CATG | 5 cut(s) | 239, 250, 377, 568, 1132 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 54, 474 |
| NmuCI | GTSAC | 4 cut(s) | 301, 733, 916, 1033 |
| PaeR7I | CTCGAG | 1 cut(s) | 668 |
| PceI | AGGCCT | 1 cut(s) | 319 |
| PciSI | GCTCTTC | 1 cut(s) | 992 |
| PfeI | GAWTC | 3 cut(s) | 323, 683, 998 |
| PkrI | GCNGC | 3 cut(s) | 127, 1198, 1207 |
| PleI | GAGTC | 3 cut(s) | 740, 976, 1102 |
| PluTI | GGCGCC | 2 cut(s) | 8, 56 |
| PmaCI | CACGTG | 1 cut(s) | 337 |
| PmlI | CACGTG | 1 cut(s) | 337 |
| PpsI | GAGTC | 3 cut(s) | 740, 976, 1102 |
| Ppu21I | YACGTR | 1 cut(s) | 337 |
| PshBI | ATTAAT | 1 cut(s) | 701 |
| PsiI | TTATAA | 1 cut(s) | 135 |
| Psp124BI | GAGCTC | 1 cut(s) | 987 |
| PspCI | CACGTG | 1 cut(s) | 337 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 54, 474 |
| PsuI | RGATCY | 1 cut(s) | 472 |
| RsaI | GTAC | 2 cut(s) | 341, 548 |
| RsaNI | GTAC | 2 cut(s) | 340, 547 |
| SacI | GAGCTC | 1 cut(s) | 987 |
| SalI | GTCGAC | 1 cut(s) | 1136 |
| SapI | GCTCTTC | 1 cut(s) | 992 |
| SaqAI | TTAA | 2 cut(s) | 701, 839 |
| SatI | GCNGC | 3 cut(s) | 126, 1197, 1206 |
| Sau3AI | GATC | 6 cut(s) | 97, 181, 238, 472, 528, 753 |
| SchI | GAGTC | 3 cut(s) | 741, 977, 1103 |
| ScrFI | CCNGG | 1 cut(s) | 1028 |
| SduI | GDGCHC | 2 cut(s) | 987, 1176 |
| SfaNI | GCATC | 5 cut(s) | 206, 282, 673, 1198, 1223 |
| SfcI | CTRYAG | 3 cut(s) | 201, 435, 495 |
| SfoI | GGCGCC | 2 cut(s) | 6, 54 |
| Sfr274I | CTCGAG | 1 cut(s) | 668 |
| SlaI | CTCGAG | 1 cut(s) | 668 |
| SmlI | CTYRAG | 1 cut(s) | 668 |
| SmoI | CTYRAG | 1 cut(s) | 668 |
| Sse9I | AATT | 5 cut(s) | 291, 384, 516, 815, 992 |
| SseBI | AGGCCT | 1 cut(s) | 319 |
| SspDI | GGCGCC | 2 cut(s) | 4, 52 |
| SstI | GAGCTC | 1 cut(s) | 987 |
| StuI | AGGCCT | 1 cut(s) | 319 |
| StyD4I | CCNGG | 1 cut(s) | 1026 |
| StyI | CCWWGG | 2 cut(s) | 14, 62 |
| TaaI | ACNGT | 2 cut(s) | 451, 499 |
| TaiI | ACGT | 2 cut(s) | 339, 1035 |
| TaqI | TCGA | 3 cut(s) | 669, 756, 1137 |
| TaqII | GACCGA | 1 cut(s) | 861 |
| TasI | AATT | 5 cut(s) | 291, 384, 516, 815, 992 |
| TatI | WGTACW | 1 cut(s) | 339 |
| TfiI | GAWTC | 3 cut(s) | 323, 683, 998 |
| Tru1I | TTAA | 2 cut(s) | 701, 839 |
| Tru9I | TTAA | 2 cut(s) | 701, 839 |
| TscAI | CASTG | 1 cut(s) | 1156 |
| TseFI | GTSAC | 4 cut(s) | 301, 733, 916, 1033 |
| TseI | GCWGC | 3 cut(s) | 125, 1196, 1205 |
| Tsp45I | GTSAC | 4 cut(s) | 301, 733, 916, 1033 |
| TspDTI | ATGAA | 3 cut(s) | 153, 362, 438 |
| TspGWI | ACGGA | 1 cut(s) | 327 |
| TspRI | CASTG | 1 cut(s) | 1156 |
| VspI | ATTAAT | 1 cut(s) | 701 |
| XapI | RAATTY | 1 cut(s) | 384 |
| XhoI | CTCGAG | 1 cut(s) | 668 |
| XmiI | GTMKAC | 1 cut(s) | 1137 |
| ZraI | GACGTC | 1 cut(s) | 1033 |