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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 278 |
| AclI | AACGTT | 1 cut(s) | 332 |
| AclWI | GGATC | 2 cut(s) | 161, 380 |
| AcoI | YGGCCR | 1 cut(s) | 286 |
| AfaI | GTAC | 1 cut(s) | 156 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 41, 278, 398 |
| AgsI | TTSAA | 1 cut(s) | 204 |
| AhlI | ACTAGT | 1 cut(s) | 65 |
| AluBI | AGCT | 2 cut(s) | 108, 131 |
| AluI | AGCT | 2 cut(s) | 108, 131 |
| Alw21I | GWGCWC | 1 cut(s) | 110 |
| Alw26I | GTCTC | 1 cut(s) | 166 |
| AlwI | GGATC | 2 cut(s) | 161, 380 |
| AoxI | GGCC | 2 cut(s) | 22, 286 |
| ApeKI | GCWGC | 1 cut(s) | 448 |
| AseI | ATTAAT | 1 cut(s) | 345 |
| AspLEI | GCGC | 1 cut(s) | 199 |
| AspS9I | GGNCC | 1 cut(s) | 22 |
| BalI | TGGCCA | 1 cut(s) | 288 |
| BanII | GRGCYC | 1 cut(s) | 110 |
| Bbv12I | GWGCWC | 1 cut(s) | 110 |
| BbvI | GCAGC | 1 cut(s) | 435 |
| BccI | CCATC | 1 cut(s) | 272 |
| BclI | TGATCA | 1 cut(s) | 16 |
| BcoDI | GTCTC | 1 cut(s) | 166 |
| BcuI | ACTAGT | 1 cut(s) | 65 |
| BfaI | CTAG | 3 cut(s) | 66, 95, 132 |
| BfmI | CTRYAG | 2 cut(s) | 207, 313 |
| BisI | GCNGC | 1 cut(s) | 449 |
| BlsI | GCNGC | 1 cut(s) | 450 |
| BmgT120I | GGNCC | 1 cut(s) | 22 |
| BmsI | GCATC | 2 cut(s) | 94, 291 |
| BpuEI | CTTGAG | 1 cut(s) | 250 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 41, 278, 398 |
| Bse1I | ACTGG | 1 cut(s) | 6 |
| Bse3DI | GCAATG | 1 cut(s) | 46 |
| BseGI | GGATG | 3 cut(s) | 19, 141, 265 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 41, 278, 398 |
| BseMI | GCAATG | 1 cut(s) | 46 |
| BseMII | CTCAG | 1 cut(s) | 467 |
| BseNI | ACTGG | 1 cut(s) | 6 |
| BseXI | GCAGC | 1 cut(s) | 435 |
| BshFI | GGCC | 2 cut(s) | 24, 288 |
| BsiHKAI | GWGCWC | 1 cut(s) | 110 |
| BslFI | GGGAC | 2 cut(s) | 14, 63 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 41, 278, 398 |
| BsmAI | GTCTC | 1 cut(s) | 166 |
| BsmFI | GGGAC | 2 cut(s) | 14, 63 |
| BsmI | GAATGC | 1 cut(s) | 199 |
| BsnI | GGCC | 2 cut(s) | 24, 288 |
| Bsp1286I | GDGCHC | 1 cut(s) | 110 |
| Bsp143I | GATC | 3 cut(s) | 16, 166, 372 |
| BspANI | GGCC | 2 cut(s) | 24, 288 |
| BspCNI | CTCAG | 1 cut(s) | 466 |
| BspPI | GGATC | 2 cut(s) | 161, 380 |
| BsrDI | GCAATG | 1 cut(s) | 46 |
| BsrI | ACTGG | 1 cut(s) | 6 |
| BssMI | GATC | 3 cut(s) | 16, 166, 372 |
| Bst4CI | ACNGT | 1 cut(s) | 208 |
| BstC8I | GCNNGC | 1 cut(s) | 295 |
| BstDEI | CTNAG | 2 cut(s) | 89, 453 |
| BstF5I | GGATG | 3 cut(s) | 19, 141, 265 |
| BstHHI | GCGC | 1 cut(s) | 199 |
| BstKTI | GATC | 3 cut(s) | 19, 169, 375 |
| BstMAI | GTCTC | 1 cut(s) | 166 |
| BstMBI | GATC | 3 cut(s) | 16, 166, 372 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 294 |
| BstNSI | RCATGY | 2 cut(s) | 179, 297 |
| BstSFI | CTRYAG | 2 cut(s) | 207, 313 |
| BstV1I | GCAGC | 1 cut(s) | 435 |
| BstX2I | RGATCY | 1 cut(s) | 372 |
| BstYI | RGATCY | 1 cut(s) | 372 |
| BsuRI | GGCC | 2 cut(s) | 24, 288 |
| BtgZI | GCGATG | 1 cut(s) | 291 |
| BtsCI | GGATG | 3 cut(s) | 19, 141, 265 |
| Cac8I | GCNNGC | 1 cut(s) | 295 |
| CfoI | GCGC | 1 cut(s) | 199 |
| Cfr13I | GGNCC | 1 cut(s) | 22 |
| Csp6I | GTAC | 1 cut(s) | 155 |
| CviAII | CATG | 5 cut(s) | 176, 284, 290, 294, 298 |
| CviJI | RGCY | 6 cut(s) | 24, 108, 131, 288, 357, 448 |
| CviKI_1 | RGCY | 6 cut(s) | 24, 108, 131, 288, 357, 448 |
| CviQI | GTAC | 1 cut(s) | 155 |
| DdeI | CTNAG | 2 cut(s) | 89, 453 |
| DpnI | GATC | 3 cut(s) | 18, 168, 374 |
| DpnII | GATC | 3 cut(s) | 16, 166, 372 |
| EaeI | YGGCCR | 1 cut(s) | 286 |
| Ecl136II | GAGCTC | 1 cut(s) | 108 |
| Eco24I | GRGCYC | 1 cut(s) | 110 |
| Eco53kI | GAGCTC | 1 cut(s) | 108 |
| EcoICRI | GAGCTC | 1 cut(s) | 108 |
| EcoT22I | ATGCAT | 2 cut(s) | 295, 299 |
| EcoT38I | GRGCYC | 1 cut(s) | 110 |
| FaeI | CATG | 5 cut(s) | 179, 287, 293, 297, 301 |
| FaiI | YATR | 9 cut(s) | 47, 54, 80, 177, 285, 291, 295, 299, 468 |
| FaqI | GGGAC | 2 cut(s) | 14, 63 |
| FatI | CATG | 5 cut(s) | 175, 283, 289, 293, 297 |
| FbaI | TGATCA | 1 cut(s) | 16 |
| Fnu4HI | GCNGC | 1 cut(s) | 449 |
| FokI | GGATG | 3 cut(s) | 26, 148, 272 |
| FriOI | GRGCYC | 1 cut(s) | 110 |
| Fsp4HI | GCNGC | 1 cut(s) | 449 |
| FspBI | CTAG | 3 cut(s) | 66, 95, 132 |
| GlaI | GCGC | 1 cut(s) | 198 |
| GluI | GCNGC | 1 cut(s) | 449 |
| HaeIII | GGCC | 2 cut(s) | 24, 288 |
| HhaI | GCGC | 1 cut(s) | 199 |
| Hin1II | CATG | 5 cut(s) | 179, 287, 293, 297, 301 |
| Hin6I | GCGC | 1 cut(s) | 197 |
| HinP1I | GCGC | 1 cut(s) | 197 |
| HincII | GTYRAC | 1 cut(s) | 336 |
| HindII | GTYRAC | 1 cut(s) | 336 |
| HinfI | GANTC | 4 cut(s) | 27, 149, 263, 395 |
| Hpy166II | GTNNAC | 1 cut(s) | 336 |
| Hpy188I | TCNGA | 5 cut(s) | 117, 171, 372, 409, 456 |
| Hpy188III | TCNNGA | 2 cut(s) | 267, 392 |
| Hpy8I | GTNNAC | 1 cut(s) | 336 |
| HpyAV | CCTTC | 2 cut(s) | 438, 451 |
| HpyCH4III | ACNGT | 1 cut(s) | 208 |
| HpyCH4IV | ACGT | 2 cut(s) | 332, 380 |
| HpyCH4V | TGCA | 5 cut(s) | 85, 179, 293, 297, 364 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 294 |
| HpyF3I | CTNAG | 2 cut(s) | 89, 453 |
| HpySE526I | ACGT | 2 cut(s) | 332, 380 |
| Hsp92II | CATG | 5 cut(s) | 179, 287, 293, 297, 301 |
| HspAI | GCGC | 1 cut(s) | 197 |
| Ksp22I | TGATCA | 1 cut(s) | 16 |
| Kzo9I | GATC | 3 cut(s) | 16, 166, 372 |
| LpnPI | CCDG | 4 cut(s) | 5, 19, 384, 405 |
| Lsp1109I | GCAGC | 1 cut(s) | 435 |
| LweI | GCATC | 2 cut(s) | 94, 291 |
| MaeI | CTAG | 3 cut(s) | 66, 95, 132 |
| MaeII | ACGT | 2 cut(s) | 332, 380 |
| MalI | GATC | 3 cut(s) | 18, 168, 374 |
| MboI | GATC | 3 cut(s) | 16, 166, 372 |
| MboII | GAAGA | 1 cut(s) | 380 |
| MflI | RGATCY | 1 cut(s) | 372 |
| MhlI | GDGCHC | 1 cut(s) | 110 |
| MlsI | TGGCCA | 1 cut(s) | 288 |
| MluCI | AATT | 2 cut(s) | 342, 384 |
| MluNI | TGGCCA | 1 cut(s) | 288 |
| MlyI | GAGTC | 3 cut(s) | 36, 158, 257 |
| MnlI | CCTC | 1 cut(s) | 462 |
| Mox20I | TGGCCA | 1 cut(s) | 288 |
| Mph1103I | ATGCAT | 2 cut(s) | 295, 299 |
| MscI | TGGCCA | 1 cut(s) | 288 |
| MseI | TTAA | 3 cut(s) | 141, 255, 345 |
| MslI | CAYNNNNRTG | 1 cut(s) | 288 |
| Msp20I | TGGCCA | 1 cut(s) | 288 |
| Mva1269I | GAATGC | 1 cut(s) | 199 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 294 |
| NdeII | GATC | 3 cut(s) | 16, 166, 372 |
| NlaIII | CATG | 5 cut(s) | 179, 287, 293, 297, 301 |
| NmeAIII | GCCGAG | 1 cut(s) | 50 |
| NsiI | ATGCAT | 2 cut(s) | 295, 299 |
| NspI | RCATGY | 2 cut(s) | 179, 297 |
| PaeI | GCATGC | 1 cut(s) | 297 |
| PctI | GAATGC | 1 cut(s) | 199 |
| PfeI | GAWTC | 1 cut(s) | 395 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 278 |
| PkrI | GCNGC | 1 cut(s) | 450 |
| PleI | GAGTC | 3 cut(s) | 35, 157, 257 |
| PpsI | GAGTC | 3 cut(s) | 35, 157, 257 |
| PshBI | ATTAAT | 1 cut(s) | 345 |
| Psp124BI | GAGCTC | 1 cut(s) | 110 |
| Psp1406I | AACGTT | 1 cut(s) | 332 |
| PspPI | GGNCC | 1 cut(s) | 22 |
| PsuI | RGATCY | 1 cut(s) | 372 |
| RsaI | GTAC | 1 cut(s) | 156 |
| RsaNI | GTAC | 1 cut(s) | 155 |
| RseI | CAYNNNNRTG | 1 cut(s) | 288 |
| SacI | GAGCTC | 1 cut(s) | 110 |
| SaqAI | TTAA | 3 cut(s) | 141, 255, 345 |
| SatI | GCNGC | 1 cut(s) | 449 |
| Sau3AI | GATC | 3 cut(s) | 16, 166, 372 |
| Sau96I | GGNCC | 1 cut(s) | 22 |
| SchI | GAGTC | 3 cut(s) | 36, 158, 257 |
| SduI | GDGCHC | 1 cut(s) | 110 |
| SetI | ASST | 4 cut(s) | 110, 133, 335, 383 |
| SfaNI | GCATC | 2 cut(s) | 94, 291 |
| SfcI | CTRYAG | 2 cut(s) | 207, 313 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 288 |
| SmlI | CTYRAG | 1 cut(s) | 265 |
| SmoI | CTYRAG | 1 cut(s) | 265 |
| SpeI | ACTAGT | 1 cut(s) | 65 |
| SphI | GCATGC | 1 cut(s) | 297 |
| Sse9I | AATT | 2 cut(s) | 342, 384 |
| SspMI | CTAG | 3 cut(s) | 66, 95, 132 |
| SstI | GAGCTC | 1 cut(s) | 110 |
| TaaI | ACNGT | 1 cut(s) | 208 |
| TaiI | ACGT | 2 cut(s) | 335, 383 |
| TasI | AATT | 2 cut(s) | 342, 384 |
| TfiI | GAWTC | 1 cut(s) | 395 |
| Tru1I | TTAA | 3 cut(s) | 141, 255, 345 |
| Tru9I | TTAA | 3 cut(s) | 141, 255, 345 |
| TseI | GCWGC | 1 cut(s) | 448 |
| TspGWI | ACGGA | 1 cut(s) | 353 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 278 |
| VspI | ATTAAT | 1 cut(s) | 345 |
| XceI | RCATGY | 2 cut(s) | 179, 297 |
| XspI | CTAG | 3 cut(s) | 66, 95, 132 |
| Zsp2I | ATGCAT | 2 cut(s) | 295, 299 |