DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NYN | PF01936 | 193 - 276 | 1.6e-07 | NYN domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 136 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 644 |
| AccII | CGCG | 1 cut(s) | 296 |
| AciI | CCGC | 8 cut(s) | 222, 242, 289, 601, 605, 821, 881, 1045 |
| AcsI | RAATTY | 1 cut(s) | 17 |
| AcuI | CTGAAG | 2 cut(s) | 617, 830 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 228, 572, 644, 1065 |
| AflIII | ACRYGT | 1 cut(s) | 294 |
| AgsI | TTSAA | 5 cut(s) | 44, 104, 121, 519, 916 |
| AluBI | AGCT | 5 cut(s) | 415, 433, 595, 966, 1075 |
| AluI | AGCT | 5 cut(s) | 415, 433, 595, 966, 1075 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 782 |
| ApeKI | GCWGC | 2 cut(s) | 433, 818 |
| ApoI | RAATTY | 1 cut(s) | 17 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 229, 261 |
| AsuHPI | GGTGA | 3 cut(s) | 508, 809, 998 |
| BanI | GGYRCC | 1 cut(s) | 136 |
| BanII | GRGCYC | 3 cut(s) | 261, 369, 808 |
| BbsI | GAAGAC | 1 cut(s) | 779 |
| BbvI | GCAGC | 2 cut(s) | 420, 805 |
| BccI | CCATC | 6 cut(s) | 520, 676, 742, 794, 965, 977 |
| BceAI | ACGGC | 2 cut(s) | 196, 255 |
| BisI | GCNGC | 4 cut(s) | 222, 243, 434, 819 |
| BlsI | GCNGC | 4 cut(s) | 223, 244, 435, 820 |
| BmiI | GGNNCC | 1 cut(s) | 138 |
| BmsI | GCATC | 3 cut(s) | 208, 1075, 1081 |
| BpiI | GAAGAC | 1 cut(s) | 779 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1064, 1096 |
| BpuEI | CTTGAG | 2 cut(s) | 218, 297 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 751, 781, 836, 866 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 228, 572, 644, 1065 |
| Bse118I | RCCGGY | 2 cut(s) | 224, 1058 |
| BseGI | GGATG | 6 cut(s) | 367, 559, 727, 745, 976, 1003 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 228, 572, 644, 1065 |
| BseRI | GAGGAG | 4 cut(s) | 406, 706, 772, 775 |
| BseXI | GCAGC | 2 cut(s) | 420, 805 |
| Bsh1236I | CGCG | 1 cut(s) | 296 |
| BshNI | GGYRCC | 1 cut(s) | 136 |
| BsiSI | CCGG | 2 cut(s) | 225, 1059 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 228, 572, 644, 1065 |
| BsmI | GAATGC | 1 cut(s) | 547 |
| Bsp1286I | GDGCHC | 3 cut(s) | 261, 369, 808 |
| Bsp143I | GATC | 1 cut(s) | 273 |
| BspACI | CCGC | 8 cut(s) | 222, 242, 289, 601, 605, 821, 881, 1045 |
| BspFNI | CGCG | 1 cut(s) | 296 |
| BspLI | GGNNCC | 1 cut(s) | 138 |
| BspT107I | GGYRCC | 1 cut(s) | 136 |
| BsrFI | RCCGGY | 2 cut(s) | 224, 1058 |
| BssAI | RCCGGY | 2 cut(s) | 224, 1058 |
| BssMI | GATC | 1 cut(s) | 273 |
| Bst4CI | ACNGT | 2 cut(s) | 778, 905 |
| Bst6I | CTCTTC | 3 cut(s) | 449, 806, 911 |
| BstC8I | GCNNGC | 3 cut(s) | 226, 230, 603 |
| BstDEI | CTNAG | 1 cut(s) | 864 |
| BstF5I | GGATG | 6 cut(s) | 367, 559, 727, 745, 976, 1003 |
| BstFNI | CGCG | 1 cut(s) | 296 |
| BstKTI | GATC | 1 cut(s) | 276 |
| BstMBI | GATC | 1 cut(s) | 273 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 265 |
| BstUI | CGCG | 1 cut(s) | 296 |
| BstV1I | GCAGC | 2 cut(s) | 420, 805 |
| BstV2I | GAAGAC | 1 cut(s) | 779 |
| BtgZI | GCGATG | 1 cut(s) | 1065 |
| BtsCI | GGATG | 6 cut(s) | 367, 559, 727, 745, 976, 1003 |
| BtsI | GCAGTG | 1 cut(s) | 882 |
| BtsIMutI | CAGTG | 1 cut(s) | 882 |
| Cac8I | GCNNGC | 3 cut(s) | 226, 230, 603 |
| CaiI | CAGNNNCTG | 1 cut(s) | 782 |
| Cfr10I | RCCGGY | 2 cut(s) | 224, 1058 |
| CviAII | CATG | 1 cut(s) | 437 |
| DdeI | CTNAG | 1 cut(s) | 864 |
| DpnI | GATC | 1 cut(s) | 275 |
| DpnII | GATC | 1 cut(s) | 273 |
| Eam1104I | CTCTTC | 3 cut(s) | 449, 806, 911 |
| EarI | CTCTTC | 3 cut(s) | 449, 806, 911 |
| Eco24I | GRGCYC | 3 cut(s) | 261, 369, 808 |
| Eco57I | CTGAAG | 2 cut(s) | 617, 830 |
| EcoT38I | GRGCYC | 3 cut(s) | 261, 369, 808 |
| FaeI | CATG | 1 cut(s) | 440 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 399, 431 |
| FatI | CATG | 1 cut(s) | 436 |
| FauI | CCCGC | 2 cut(s) | 594, 598 |
| FauNDI | CATATG | 2 cut(s) | 270, 450 |
| Fnu4HI | GCNGC | 4 cut(s) | 222, 243, 434, 819 |
| FokI | GGATG | 6 cut(s) | 374, 566, 734, 752, 983, 1010 |
| FriOI | GRGCYC | 3 cut(s) | 261, 369, 808 |
| Fsp4HI | GCNGC | 4 cut(s) | 222, 243, 434, 819 |
| GluI | GCNGC | 4 cut(s) | 222, 243, 434, 819 |
| HapII | CCGG | 2 cut(s) | 225, 1059 |
| Hin1II | CATG | 1 cut(s) | 440 |
| HindIII | AAGCTT | 1 cut(s) | 413 |
| HinfI | GANTC | 6 cut(s) | 421, 463, 473, 725, 824, 1079 |
| HpaII | CCGG | 2 cut(s) | 225, 1059 |
| HphI | GGTGA | 3 cut(s) | 508, 809, 998 |
| Hpy188I | TCNGA | 8 cut(s) | 58, 89, 621, 690, 721, 730, 810, 1084 |
| Hpy188III | TCNNGA | 1 cut(s) | 235 |
| Hpy99I | CGWCG | 1 cut(s) | 253 |
| HpyAV | CCTTC | 4 cut(s) | 43, 566, 853, 862 |
| HpyCH4III | ACNGT | 2 cut(s) | 778, 905 |
| HpyCH4V | TGCA | 5 cut(s) | 167, 436, 545, 656, 961 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 265 |
| HpyF3I | CTNAG | 1 cut(s) | 864 |
| Hsp92II | CATG | 1 cut(s) | 440 |
| KroI | GCCGGC | 1 cut(s) | 224 |
| KroNI | GCCGGC | 1 cut(s) | 226 |
| Kzo9I | GATC | 1 cut(s) | 273 |
| LmnI | GCTCC | 2 cut(s) | 1047, 1072 |
| Lsp1109I | GCAGC | 2 cut(s) | 420, 805 |
| LweI | GCATC | 3 cut(s) | 208, 1075, 1081 |
| MaeIII | GTNAC | 1 cut(s) | 205 |
| MalI | GATC | 1 cut(s) | 275 |
| MboI | GATC | 1 cut(s) | 273 |
| MboII | GAAGA | 6 cut(s) | 337, 466, 535, 784, 823, 928 |
| MfeI | CAATTG | 1 cut(s) | 1036 |
| MhlI | GDGCHC | 3 cut(s) | 261, 369, 808 |
| MluCI | AATT | 7 cut(s) | 17, 39, 121, 168, 500, 1005, 1036 |
| MluI | ACGCGT | 1 cut(s) | 294 |
| MlyI | GAGTC | 3 cut(s) | 472, 482, 1073 |
| MroNI | GCCGGC | 1 cut(s) | 224 |
| MseI | TTAA | 2 cut(s) | 429, 1020 |
| MspI | CCGG | 2 cut(s) | 225, 1059 |
| MunI | CAATTG | 1 cut(s) | 1036 |
| Mva1269I | GAATGC | 1 cut(s) | 547 |
| MvnI | CGCG | 1 cut(s) | 296 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 265 |
| NaeI | GCCGGC | 1 cut(s) | 226 |
| NdeI | CATATG | 2 cut(s) | 270, 450 |
| NdeII | GATC | 1 cut(s) | 273 |
| NgoMIV | GCCGGC | 1 cut(s) | 224 |
| NlaIII | CATG | 1 cut(s) | 440 |
| NlaIV | GGNNCC | 1 cut(s) | 138 |
| NmuCI | GTSAC | 1 cut(s) | 205 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 245 |
| PctI | GAATGC | 1 cut(s) | 547 |
| PdiI | GCCGGC | 1 cut(s) | 226 |
| PfeI | GAWTC | 3 cut(s) | 421, 725, 824 |
| PflFI | GACNNNGTC | 1 cut(s) | 93 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 644 |
| PkrI | GCNGC | 4 cut(s) | 223, 244, 435, 820 |
| PleI | GAGTC | 3 cut(s) | 471, 481, 1073 |
| PpsI | GAGTC | 3 cut(s) | 471, 481, 1073 |
| PspN4I | GGNNCC | 1 cut(s) | 138 |
| PstNI | CAGNNNCTG | 1 cut(s) | 782 |
| PsyI | GACNNNGTC | 1 cut(s) | 93 |
| SaqAI | TTAA | 2 cut(s) | 429, 1020 |
| SatI | GCNGC | 4 cut(s) | 222, 243, 434, 819 |
| Sau3AI | GATC | 1 cut(s) | 273 |
| SchI | GAGTC | 3 cut(s) | 472, 482, 1073 |
| SduI | GDGCHC | 3 cut(s) | 261, 369, 808 |
| SfaNI | GCATC | 3 cut(s) | 208, 1075, 1081 |
| SmlI | CTYRAG | 2 cut(s) | 233, 312 |
| SmoI | CTYRAG | 2 cut(s) | 233, 312 |
| Sse9I | AATT | 7 cut(s) | 17, 39, 121, 168, 500, 1005, 1036 |
| SsiI | CCGC | 8 cut(s) | 222, 242, 289, 601, 605, 821, 881, 1045 |
| TaaI | ACNGT | 2 cut(s) | 778, 905 |
| TaqI | TCGA | 3 cut(s) | 107, 216, 471 |
| TasI | AATT | 7 cut(s) | 17, 39, 121, 168, 500, 1005, 1036 |
| TauI | GCSGC | 2 cut(s) | 224, 245 |
| TfiI | GAWTC | 3 cut(s) | 421, 725, 824 |
| Tru1I | TTAA | 2 cut(s) | 429, 1020 |
| Tru9I | TTAA | 2 cut(s) | 429, 1020 |
| TscAI | CASTG | 1 cut(s) | 882 |
| TseFI | GTSAC | 1 cut(s) | 205 |
| TseI | GCWGC | 2 cut(s) | 433, 818 |
| Tsp45I | GTSAC | 1 cut(s) | 205 |
| TspDTI | ATGAA | 6 cut(s) | 73, 434, 467, 536, 1043, 1089 |
| TspGWI | ACGGA | 1 cut(s) | 193 |
| TspRI | CASTG | 1 cut(s) | 882 |
| Tth111I | GACNNNGTC | 1 cut(s) | 93 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 644 |
| XapI | RAATTY | 1 cut(s) | 17 |