DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 895 |
| AciI | CCGC | 2 cut(s) | 558, 895 |
| AclWI | GGATC | 3 cut(s) | 425, 438, 469 |
| AcoI | YGGCCR | 1 cut(s) | 368 |
| AcsI | RAATTY | 2 cut(s) | 103, 227 |
| AcuI | CTGAAG | 2 cut(s) | 560, 1034 |
| AfaI | GTAC | 2 cut(s) | 348, 885 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 238 |
| AgsI | TTSAA | 6 cut(s) | 364, 416, 522, 788, 903, 926 |
| AluBI | AGCT | 5 cut(s) | 149, 314, 596, 814, 941 |
| AluI | AGCT | 5 cut(s) | 149, 314, 596, 814, 941 |
| Alw26I | GTCTC | 2 cut(s) | 661, 980 |
| AlwI | GGATC | 3 cut(s) | 425, 438, 469 |
| AoxI | GGCC | 1 cut(s) | 368 |
| ApeKI | GCWGC | 1 cut(s) | 248 |
| ApoI | RAATTY | 2 cut(s) | 103, 227 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 603, 635 |
| AseI | ATTAAT | 1 cut(s) | 566 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1047 |
| AsuHPI | GGTGA | 4 cut(s) | 152, 572, 613, 721 |
| BaeI | ACNNNNGTAYC | 3 cut(s) | 37, 867, 900 |
| BamHI | GGATCC | 1 cut(s) | 430 |
| BbsI | GAAGAC | 1 cut(s) | 767 |
| BbvI | GCAGC | 1 cut(s) | 260 |
| BccI | CCATC | 2 cut(s) | 655, 811 |
| BceAI | ACGGC | 1 cut(s) | 383 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 990, 1024 |
| BciVI | GTATCC | 1 cut(s) | 735 |
| BcoDI | GTCTC | 2 cut(s) | 661, 980 |
| BfaI | CTAG | 1 cut(s) | 150 |
| BfuI | GTATCC | 1 cut(s) | 735 |
| BglII | AGATCT | 1 cut(s) | 703 |
| BisI | GCNGC | 2 cut(s) | 249, 896 |
| BlsI | GCNGC | 2 cut(s) | 250, 897 |
| BmcAI | AGTACT | 1 cut(s) | 348 |
| BmiI | GGNNCC | 2 cut(s) | 432, 957 |
| BmsI | GCATC | 5 cut(s) | 279, 699, 863, 957, 1022 |
| BpiI | GAAGAC | 1 cut(s) | 767 |
| BsaBI | GATNNNNATC | 1 cut(s) | 639 |
| BsaI | GGTCTC | 1 cut(s) | 980 |
| BsaWI | WCCGGW | 2 cut(s) | 480, 889 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 238 |
| Bse1I | ACTGG | 3 cut(s) | 70, 191, 488 |
| Bse3DI | GCAATG | 1 cut(s) | 1008 |
| Bse8I | GATNNNNATC | 1 cut(s) | 639 |
| BseJI | GATNNNNATC | 1 cut(s) | 639 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BseMI | GCAATG | 1 cut(s) | 1008 |
| BseMII | CTCAG | 2 cut(s) | 306, 951 |
| BseNI | ACTGG | 3 cut(s) | 70, 191, 488 |
| BseRI | GAGGAG | 1 cut(s) | 124 |
| BseXI | GCAGC | 1 cut(s) | 260 |
| BshFI | GGCC | 1 cut(s) | 370 |
| BsiSI | CCGG | 2 cut(s) | 481, 890 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BsmAI | GTCTC | 2 cut(s) | 661, 980 |
| BsnI | GGCC | 1 cut(s) | 370 |
| Bso31I | GGTCTC | 1 cut(s) | 980 |
| Bsp143I | GATC | 3 cut(s) | 430, 474, 703 |
| BspACI | CCGC | 2 cut(s) | 558, 895 |
| BspANI | GGCC | 1 cut(s) | 370 |
| BspCNI | CTCAG | 2 cut(s) | 307, 952 |
| BspLI | GGNNCC | 2 cut(s) | 432, 957 |
| BspPI | GGATC | 3 cut(s) | 425, 438, 469 |
| BspTNI | GGTCTC | 1 cut(s) | 980 |
| BsrBI | CCGCTC | 1 cut(s) | 895 |
| BsrDI | GCAATG | 1 cut(s) | 1008 |
| BsrI | ACTGG | 3 cut(s) | 70, 191, 488 |
| BssMI | GATC | 3 cut(s) | 430, 474, 703 |
| Bst4CI | ACNGT | 9 cut(s) | 17, 55, 180, 376, 457, 684, 723, 796, 883 |
| Bst6I | CTCTTC | 2 cut(s) | 375, 744 |
| BstC8I | GCNNGC | 4 cut(s) | 198, 331, 812, 1036 |
| BstDEI | CTNAG | 2 cut(s) | 315, 960 |
| BstKTI | GATC | 3 cut(s) | 433, 477, 706 |
| BstMAI | GTCTC | 2 cut(s) | 661, 980 |
| BstMBI | GATC | 3 cut(s) | 430, 474, 703 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 267 |
| BstNSI | RCATGY | 2 cut(s) | 261, 270 |
| BstV1I | GCAGC | 1 cut(s) | 260 |
| BstV2I | GAAGAC | 1 cut(s) | 767 |
| BstX2I | RGATCY | 2 cut(s) | 430, 703 |
| BstYI | RGATCY | 2 cut(s) | 430, 703 |
| BsuI | GTATCC | 1 cut(s) | 735 |
| BsuRI | GGCC | 1 cut(s) | 370 |
| BtsI | GCAGTG | 1 cut(s) | 465 |
| BtsIMutI | CAGTG | 6 cut(s) | 63, 198, 462, 465, 879, 1026 |
| Cac8I | GCNNGC | 4 cut(s) | 198, 331, 812, 1036 |
| Csp6I | GTAC | 2 cut(s) | 347, 884 |
| CviAII | CATG | 5 cut(s) | 258, 267, 445, 581, 603 |
| CviQI | GTAC | 2 cut(s) | 347, 884 |
| DdeI | CTNAG | 2 cut(s) | 315, 960 |
| DpnI | GATC | 3 cut(s) | 432, 476, 705 |
| DpnII | GATC | 3 cut(s) | 430, 474, 703 |
| DraI | TTTAAA | 1 cut(s) | 532 |
| EaeI | YGGCCR | 1 cut(s) | 368 |
| Eam1104I | CTCTTC | 2 cut(s) | 375, 744 |
| EarI | CTCTTC | 2 cut(s) | 375, 744 |
| Eco31I | GGTCTC | 1 cut(s) | 980 |
| Eco32I | GATATC | 2 cut(s) | 121, 1008 |
| Eco57I | CTGAAG | 2 cut(s) | 560, 1034 |
| EcoRV | GATATC | 2 cut(s) | 121, 1008 |
| EcoT22I | ATGCAT | 1 cut(s) | 272 |
| FaeI | CATG | 5 cut(s) | 261, 270, 448, 584, 606 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 395, 427, 833, 865, 1032, 1064 |
| FatI | CATG | 5 cut(s) | 257, 266, 444, 580, 602 |
| Fnu4HI | GCNGC | 2 cut(s) | 249, 896 |
| Fsp4HI | GCNGC | 2 cut(s) | 249, 896 |
| FspBI | CTAG | 1 cut(s) | 150 |
| GluI | GCNGC | 2 cut(s) | 249, 896 |
| HaeIII | GGCC | 1 cut(s) | 370 |
| HapII | CCGG | 2 cut(s) | 481, 890 |
| Hin1II | CATG | 5 cut(s) | 261, 270, 448, 584, 606 |
| HincII | GTYRAC | 1 cut(s) | 222 |
| HindII | GTYRAC | 1 cut(s) | 222 |
| HindIII | AAGCTT | 1 cut(s) | 939 |
| HinfI | GANTC | 1 cut(s) | 77 |
| HpaII | CCGG | 2 cut(s) | 481, 890 |
| HphI | GGTGA | 4 cut(s) | 152, 572, 613, 721 |
| Hpy166II | GTNNAC | 3 cut(s) | 13, 222, 712 |
| Hpy188I | TCNGA | 5 cut(s) | 59, 125, 660, 824, 1053 |
| Hpy188III | TCNNGA | 3 cut(s) | 284, 629, 701 |
| Hpy8I | GTNNAC | 3 cut(s) | 13, 222, 712 |
| HpyAV | CCTTC | 2 cut(s) | 142, 976 |
| HpyCH4III | ACNGT | 9 cut(s) | 17, 55, 180, 376, 457, 684, 723, 796, 883 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 270, 465, 589, 609, 854, 948 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 267 |
| HpyF3I | CTNAG | 2 cut(s) | 315, 960 |
| Hsp92II | CATG | 5 cut(s) | 261, 270, 448, 584, 606 |
| Kzo9I | GATC | 3 cut(s) | 430, 474, 703 |
| LmnI | GCTCC | 3 cut(s) | 892, 955, 998 |
| Lsp1109I | GCAGC | 1 cut(s) | 260 |
| LweI | GCATC | 5 cut(s) | 279, 699, 863, 957, 1022 |
| MaeI | CTAG | 1 cut(s) | 150 |
| MaeIII | GTNAC | 4 cut(s) | 49, 140, 241, 619 |
| MalI | GATC | 3 cut(s) | 432, 476, 705 |
| MbiI | CCGCTC | 1 cut(s) | 895 |
| MboI | GATC | 3 cut(s) | 430, 474, 703 |
| MboII | GAAGA | 3 cut(s) | 392, 761, 772 |
| MfeI | CAATTG | 1 cut(s) | 694 |
| MflI | RGATCY | 2 cut(s) | 430, 703 |
| MluCI | AATT | 8 cut(s) | 71, 103, 126, 227, 416, 563, 567, 694 |
| MmeI | TCCRAC | 1 cut(s) | 752 |
| MnlI | CCTC | 5 cut(s) | 102, 105, 109, 488, 506 |
| Mph1103I | ATGCAT | 1 cut(s) | 272 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1047 |
| MseI | TTAA | 6 cut(s) | 174, 215, 419, 531, 566, 756 |
| MslI | CAYNNNNRTG | 1 cut(s) | 659 |
| MspA1I | CMGCKG | 1 cut(s) | 558 |
| MspI | CCGG | 2 cut(s) | 481, 890 |
| MunI | CAATTG | 1 cut(s) | 694 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 267 |
| NdeII | GATC | 3 cut(s) | 430, 474, 703 |
| NlaIII | CATG | 5 cut(s) | 261, 270, 448, 584, 606 |
| NlaIV | GGNNCC | 2 cut(s) | 432, 957 |
| NmuCI | GTSAC | 2 cut(s) | 140, 619 |
| NsiI | ATGCAT | 1 cut(s) | 272 |
| NspI | RCATGY | 2 cut(s) | 261, 270 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1047 |
| PfeI | GAWTC | 1 cut(s) | 77 |
| PkrI | GCNGC | 2 cut(s) | 250, 897 |
| PshBI | ATTAAT | 1 cut(s) | 566 |
| PspN4I | GGNNCC | 2 cut(s) | 432, 957 |
| PsuI | RGATCY | 2 cut(s) | 430, 703 |
| RsaI | GTAC | 2 cut(s) | 348, 885 |
| RsaNI | GTAC | 2 cut(s) | 347, 884 |
| RseI | CAYNNNNRTG | 1 cut(s) | 659 |
| SaqAI | TTAA | 6 cut(s) | 174, 215, 419, 531, 566, 756 |
| SatI | GCNGC | 2 cut(s) | 249, 896 |
| Sau3AI | GATC | 3 cut(s) | 430, 474, 703 |
| ScaI | AGTACT | 1 cut(s) | 348 |
| SetI | ASST | 9 cut(s) | 134, 151, 221, 316, 361, 598, 779, 816, 943 |
| SfaNI | GCATC | 5 cut(s) | 279, 699, 863, 957, 1022 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 659 |
| Sse9I | AATT | 8 cut(s) | 71, 103, 126, 227, 416, 563, 567, 694 |
| SsiI | CCGC | 2 cut(s) | 558, 895 |
| SspMI | CTAG | 1 cut(s) | 150 |
| TaaI | ACNGT | 9 cut(s) | 17, 55, 180, 376, 457, 684, 723, 796, 883 |
| TaqI | TCGA | 2 cut(s) | 473, 628 |
| TaqII | GACCGA | 1 cut(s) | 397 |
| TasI | AATT | 8 cut(s) | 71, 103, 126, 227, 416, 563, 567, 694 |
| TatI | WGTACW | 1 cut(s) | 346 |
| TauI | GCSGC | 1 cut(s) | 898 |
| TfiI | GAWTC | 1 cut(s) | 77 |
| Tru1I | TTAA | 6 cut(s) | 174, 215, 419, 531, 566, 756 |
| Tru9I | TTAA | 6 cut(s) | 174, 215, 419, 531, 566, 756 |
| TscAI | CASTG | 6 cut(s) | 70, 198, 462, 472, 886, 1026 |
| TseFI | GTSAC | 2 cut(s) | 140, 619 |
| TseI | GCWGC | 1 cut(s) | 248 |
| Tsp45I | GTSAC | 2 cut(s) | 140, 619 |
| TspDTI | ATGAA | 5 cut(s) | 318, 401, 461, 786, 816 |
| TspRI | CASTG | 6 cut(s) | 70, 198, 462, 472, 886, 1026 |
| VspI | ATTAAT | 1 cut(s) | 566 |
| XapI | RAATTY | 2 cut(s) | 103, 227 |
| XceI | RCATGY | 2 cut(s) | 261, 270 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1047 |
| XspI | CTAG | 1 cut(s) | 150 |
| ZrmI | AGTACT | 1 cut(s) | 348 |
| Zsp2I | ATGCAT | 1 cut(s) | 272 |