DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| REPA_OB_2 | PF16900 | 21 - 110 | 1.8e-09 | Replication protein A OB domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 59 |
| AclWI | GGATC | 5 cut(s) | 284, 332, 599, 632, 645 |
| AcoI | YGGCCR | 1 cut(s) | 535 |
| AcsI | RAATTY | 4 cut(s) | 212, 284, 345, 374 |
| AcuI | CTGAAG | 3 cut(s) | 464, 654, 807 |
| AfaI | GTAC | 1 cut(s) | 468 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 779 |
| AgsI | TTSAA | 2 cut(s) | 217, 233 |
| AhlI | ACTAGT | 1 cut(s) | 7 |
| AjnI | CCWGG | 1 cut(s) | 385 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 175, 207 |
| AluBI | AGCT | 1 cut(s) | 580 |
| AluI | AGCT | 1 cut(s) | 580 |
| Alw26I | GTCTC | 2 cut(s) | 45, 218 |
| AlwI | GGATC | 5 cut(s) | 284, 332, 599, 632, 645 |
| Ama87I | CYCGRG | 1 cut(s) | 207 |
| AoxI | GGCC | 3 cut(s) | 448, 535, 591 |
| ApoI | RAATTY | 4 cut(s) | 212, 284, 345, 374 |
| AspLEI | GCGC | 1 cut(s) | 495 |
| AspS9I | GGNCC | 1 cut(s) | 448 |
| AsuC2I | CCSGG | 2 cut(s) | 751, 780 |
| AsuHPI | GGTGA | 6 cut(s) | 178, 209, 409, 536, 762, 768 |
| AvaI | CYCGRG | 1 cut(s) | 207 |
| BalI | TGGCCA | 1 cut(s) | 537 |
| BamHI | GGATCC | 1 cut(s) | 637 |
| BccI | CCATC | 4 cut(s) | 95, 550, 602, 781 |
| BceAI | ACGGC | 1 cut(s) | 589 |
| BciT130I | CCWGG | 1 cut(s) | 387 |
| BciVI | GTATCC | 1 cut(s) | 520 |
| BcnI | CCSGG | 2 cut(s) | 751, 780 |
| BcoDI | GTCTC | 2 cut(s) | 45, 218 |
| BcuI | ACTAGT | 1 cut(s) | 7 |
| BfaI | CTAG | 1 cut(s) | 8 |
| BfmI | CTRYAG | 1 cut(s) | 618 |
| BfuI | GTATCC | 1 cut(s) | 520 |
| BglII | AGATCT | 2 cut(s) | 402, 472 |
| Bme1390I | CCNGG | 3 cut(s) | 387, 751, 780 |
| BmeT110I | CYCGRG | 1 cut(s) | 207 |
| BmgT120I | GGNCC | 1 cut(s) | 448 |
| BmiI | GGNNCC | 3 cut(s) | 561, 615, 639 |
| BmrFI | CCNGG | 3 cut(s) | 387, 751, 780 |
| BpuMI | CCSGG | 2 cut(s) | 751, 780 |
| BsaJI | CCNNGG | 1 cut(s) | 563 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 551, 581 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 779 |
| BseBI | CCWGG | 1 cut(s) | 387 |
| BseDI | CCNNGG | 1 cut(s) | 563 |
| BseGI | GGATG | 1 cut(s) | 364 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 779 |
| BseMII | CTCAG | 1 cut(s) | 178 |
| BseRI | GAGGAG | 2 cut(s) | 130, 234 |
| BshFI | GGCC | 3 cut(s) | 450, 537, 593 |
| BsiHKCI | CYCGRG | 1 cut(s) | 207 |
| BsiSI | CCGG | 2 cut(s) | 751, 779 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 779 |
| BsmAI | GTCTC | 2 cut(s) | 45, 218 |
| BsmBI | CGTCTC | 1 cut(s) | 45 |
| BsnI | GGCC | 3 cut(s) | 450, 537, 593 |
| BsoBI | CYCGRG | 1 cut(s) | 207 |
| Bsp143I | GATC | 8 cut(s) | 276, 337, 402, 472, 604, 637, 658, 793 |
| BspANI | GGCC | 3 cut(s) | 450, 537, 593 |
| BspCNI | CTCAG | 1 cut(s) | 177 |
| BspLI | GGNNCC | 3 cut(s) | 561, 615, 639 |
| BspPI | GGATC | 5 cut(s) | 284, 332, 599, 632, 645 |
| BssECI | CCNNGG | 1 cut(s) | 563 |
| BssMI | GATC | 8 cut(s) | 276, 337, 402, 472, 604, 637, 658, 793 |
| BssT1I | CCWWGG | 1 cut(s) | 563 |
| Bst2UI | CCWGG | 1 cut(s) | 387 |
| Bst4CI | ACNGT | 5 cut(s) | 39, 229, 466, 649, 688 |
| Bst6I | CTCTTC | 2 cut(s) | 163, 716 |
| BstC8I | GCNNGC | 1 cut(s) | 578 |
| BstDEI | CTNAG | 1 cut(s) | 164 |
| BstF5I | GGATG | 1 cut(s) | 364 |
| BstHHI | GCGC | 1 cut(s) | 495 |
| BstKTI | GATC | 8 cut(s) | 279, 340, 405, 475, 607, 640, 661, 796 |
| BstMAI | GTCTC | 2 cut(s) | 45, 218 |
| BstMBI | GATC | 8 cut(s) | 276, 337, 402, 472, 604, 637, 658, 793 |
| BstNI | CCWGG | 1 cut(s) | 387 |
| BstSCI | CCNGG | 3 cut(s) | 385, 749, 778 |
| BstSFI | CTRYAG | 1 cut(s) | 618 |
| BstX2I | RGATCY | 4 cut(s) | 337, 402, 472, 637 |
| BstYI | RGATCY | 4 cut(s) | 337, 402, 472, 637 |
| BsuI | GTATCC | 1 cut(s) | 520 |
| BsuRI | GGCC | 3 cut(s) | 450, 537, 593 |
| BtsCI | GGATG | 1 cut(s) | 364 |
| BtsI | GCAGTG | 2 cut(s) | 264, 506 |
| BtsIMutI | CAGTG | 3 cut(s) | 264, 279, 506 |
| Cac8I | GCNNGC | 1 cut(s) | 578 |
| CfoI | GCGC | 1 cut(s) | 495 |
| Cfr13I | GGNCC | 1 cut(s) | 448 |
| CseI | GACGC | 1 cut(s) | 227 |
| Csp6I | GTAC | 1 cut(s) | 467 |
| CviAII | CATG | 3 cut(s) | 91, 328, 755 |
| CviJI | RGCY | 9 cut(s) | 75, 385, 427, 450, 537, 562, 580, 593, 614 |
| CviKI_1 | RGCY | 9 cut(s) | 75, 385, 427, 450, 537, 562, 580, 593, 614 |
| CviQI | GTAC | 1 cut(s) | 467 |
| DdeI | CTNAG | 1 cut(s) | 164 |
| DpnI | GATC | 8 cut(s) | 278, 339, 404, 474, 606, 639, 660, 795 |
| DpnII | GATC | 8 cut(s) | 276, 337, 402, 472, 604, 637, 658, 793 |
| DraI | TTTAAA | 1 cut(s) | 421 |
| EaeI | YGGCCR | 1 cut(s) | 535 |
| Eam1104I | CTCTTC | 2 cut(s) | 163, 716 |
| EarI | CTCTTC | 2 cut(s) | 163, 716 |
| Eco130I | CCWWGG | 1 cut(s) | 563 |
| Eco57I | CTGAAG | 3 cut(s) | 464, 654, 807 |
| Eco88I | CYCGRG | 1 cut(s) | 207 |
| EcoRI | GAATTC | 3 cut(s) | 212, 284, 374 |
| EcoRII | CCWGG | 1 cut(s) | 385 |
| EcoT14I | CCWWGG | 1 cut(s) | 563 |
| ErhI | CCWWGG | 1 cut(s) | 563 |
| Esp3I | CGTCTC | 1 cut(s) | 45 |
| FaeI | CATG | 3 cut(s) | 94, 331, 758 |
| FaiI | YATR | 9 cut(s) | 59, 72, 92, 329, 335, 366, 499, 501, 756 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 581, 613 |
| FatI | CATG | 3 cut(s) | 90, 327, 754 |
| FokI | GGATG | 1 cut(s) | 371 |
| FspBI | CTAG | 1 cut(s) | 8 |
| GlaI | GCGC | 1 cut(s) | 494 |
| HaeIII | GGCC | 3 cut(s) | 450, 537, 593 |
| HapII | CCGG | 2 cut(s) | 751, 779 |
| HgaI | GACGC | 1 cut(s) | 227 |
| HhaI | GCGC | 1 cut(s) | 495 |
| Hin1II | CATG | 3 cut(s) | 94, 331, 758 |
| Hin6I | GCGC | 1 cut(s) | 493 |
| HinP1I | GCGC | 1 cut(s) | 493 |
| HinfI | GANTC | 4 cut(s) | 98, 134, 183, 746 |
| HpaII | CCGG | 2 cut(s) | 751, 779 |
| HphI | GGTGA | 6 cut(s) | 178, 209, 409, 536, 762, 768 |
| Hpy166II | GTNNAC | 2 cut(s) | 264, 272 |
| Hpy188I | TCNGA | 4 cut(s) | 167, 477, 555, 673 |
| Hpy188III | TCNNGA | 2 cut(s) | 602, 608 |
| Hpy8I | GTNNAC | 2 cut(s) | 264, 272 |
| HpyAV | CCTTC | 2 cut(s) | 439, 583 |
| HpyCH4III | ACNGT | 5 cut(s) | 39, 229, 466, 649, 688 |
| HpyCH4V | TGCA | 3 cut(s) | 257, 327, 503 |
| HpyF3I | CTNAG | 1 cut(s) | 164 |
| Hsp92II | CATG | 3 cut(s) | 94, 331, 758 |
| HspAI | GCGC | 1 cut(s) | 493 |
| Kzo9I | GATC | 8 cut(s) | 276, 337, 402, 472, 604, 637, 658, 793 |
| LmnI | GCTCC | 3 cut(s) | 117, 559, 619 |
| MaeI | CTAG | 1 cut(s) | 8 |
| MaeIII | GTNAC | 3 cut(s) | 3, 22, 649 |
| MalI | GATC | 8 cut(s) | 278, 339, 404, 474, 606, 639, 660, 795 |
| MboI | GATC | 8 cut(s) | 276, 337, 402, 472, 604, 637, 658, 793 |
| MboII | GAAGA | 6 cut(s) | 180, 185, 412, 703, 800, 803 |
| MflI | RGATCY | 4 cut(s) | 337, 402, 472, 637 |
| MlsI | TGGCCA | 1 cut(s) | 537 |
| MluCI | AATT | 4 cut(s) | 212, 284, 345, 374 |
| MluNI | TGGCCA | 1 cut(s) | 537 |
| MnlI | CCTC | 6 cut(s) | 108, 252, 255, 517, 557, 604 |
| Mox20I | TGGCCA | 1 cut(s) | 537 |
| MscI | TGGCCA | 1 cut(s) | 537 |
| MseI | TTAA | 1 cut(s) | 420 |
| MslI | CAYNNNNRTG | 1 cut(s) | 326 |
| Msp20I | TGGCCA | 1 cut(s) | 537 |
| MspI | CCGG | 2 cut(s) | 751, 779 |
| MspR9I | CCNGG | 3 cut(s) | 387, 751, 780 |
| MvaI | CCWGG | 1 cut(s) | 387 |
| NciI | CCSGG | 2 cut(s) | 751, 780 |
| NdeII | GATC | 8 cut(s) | 276, 337, 402, 472, 604, 637, 658, 793 |
| NlaIII | CATG | 3 cut(s) | 94, 331, 758 |
| NlaIV | GGNNCC | 3 cut(s) | 561, 615, 639 |
| PfeI | GAWTC | 4 cut(s) | 98, 134, 183, 746 |
| PsiI | TTATAA | 1 cut(s) | 59 |
| Psp6I | CCWGG | 1 cut(s) | 385 |
| PspGI | CCWGG | 1 cut(s) | 385 |
| PspN4I | GGNNCC | 3 cut(s) | 561, 615, 639 |
| PspPI | GGNCC | 1 cut(s) | 448 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 213, 245 |
| PsuI | RGATCY | 4 cut(s) | 337, 402, 472, 637 |
| RsaI | GTAC | 1 cut(s) | 468 |
| RsaNI | GTAC | 1 cut(s) | 467 |
| RseI | CAYNNNNRTG | 1 cut(s) | 326 |
| SaqAI | TTAA | 1 cut(s) | 420 |
| Sau3AI | GATC | 8 cut(s) | 276, 337, 402, 472, 604, 637, 658, 793 |
| Sau96I | GGNCC | 1 cut(s) | 448 |
| ScrFI | CCNGG | 3 cut(s) | 387, 751, 780 |
| SetI | ASST | 7 cut(s) | 32, 191, 399, 444, 549, 569, 582 |
| SfcI | CTRYAG | 1 cut(s) | 618 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 326 |
| SpeI | ACTAGT | 1 cut(s) | 7 |
| Sse9I | AATT | 4 cut(s) | 212, 284, 345, 374 |
| SspMI | CTAG | 1 cut(s) | 8 |
| StyD4I | CCNGG | 3 cut(s) | 385, 749, 778 |
| StyI | CCWWGG | 1 cut(s) | 563 |
| TaaI | ACNGT | 5 cut(s) | 39, 229, 466, 649, 688 |
| TaqI | TCGA | 2 cut(s) | 137, 522 |
| TasI | AATT | 4 cut(s) | 212, 284, 345, 374 |
| TfiI | GAWTC | 4 cut(s) | 98, 134, 183, 746 |
| Tru1I | TTAA | 1 cut(s) | 420 |
| Tru9I | TTAA | 1 cut(s) | 420 |
| TscAI | CASTG | 3 cut(s) | 264, 286, 513 |
| TspDTI | ATGAA | 4 cut(s) | 375, 703, 735, 771 |
| TspGWI | ACGGA | 1 cut(s) | 289 |
| TspRI | CASTG | 3 cut(s) | 264, 286, 513 |
| XapI | RAATTY | 4 cut(s) | 212, 284, 345, 374 |
| XspI | CTAG | 1 cut(s) | 8 |