DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 407 |
| Acc36I | ACCTGC | 1 cut(s) | 407 |
| AclWI | GGATC | 3 cut(s) | 512, 525, 556 |
| AcsI | RAATTY | 2 cut(s) | 190, 314 |
| AcuI | CTGAAG | 2 cut(s) | 647, 1121 |
| AfaI | GTAC | 3 cut(s) | 87, 435, 444 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 325 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 6 cut(s) | 392, 451, 503, 609, 875, 1013 |
| AleI | CACNNNNGTG | 1 cut(s) | 979 |
| AluBI | AGCT | 6 cut(s) | 236, 401, 683, 769, 901, 1028 |
| AluI | AGCT | 6 cut(s) | 236, 401, 683, 769, 901, 1028 |
| Alw26I | GTCTC | 3 cut(s) | 141, 748, 1067 |
| AlwI | GGATC | 3 cut(s) | 512, 525, 556 |
| AoxI | GGCC | 1 cut(s) | 346 |
| ApeKI | GCWGC | 2 cut(s) | 335, 766 |
| ApoI | RAATTY | 2 cut(s) | 190, 314 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 690, 722 |
| AseI | ATTAAT | 1 cut(s) | 653 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1134 |
| AspS9I | GGNCC | 1 cut(s) | 64 |
| AsuHPI | GGTGA | 5 cut(s) | 239, 431, 659, 700, 808 |
| AvaII | GGWCC | 1 cut(s) | 64 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 91, 124 |
| BamHI | GGATCC | 1 cut(s) | 517 |
| BbsI | GAAGAC | 2 cut(s) | 811, 854 |
| BbvI | GCAGC | 2 cut(s) | 347, 778 |
| BccI | CCATC | 2 cut(s) | 742, 898 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1077, 1111 |
| BciVI | GTATCC | 1 cut(s) | 822 |
| BcoDI | GTCTC | 3 cut(s) | 141, 748, 1067 |
| BfaI | CTAG | 1 cut(s) | 237 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuAI | ACCTGC | 1 cut(s) | 407 |
| BfuI | GTATCC | 1 cut(s) | 822 |
| BglII | AGATCT | 1 cut(s) | 790 |
| BisI | GCNGC | 2 cut(s) | 336, 767 |
| BlsI | GCNGC | 2 cut(s) | 337, 768 |
| BmcAI | AGTACT | 2 cut(s) | 87, 435 |
| Bme18I | GGWCC | 1 cut(s) | 64 |
| BmgT120I | GGNCC | 1 cut(s) | 64 |
| BmiI | GGNNCC | 2 cut(s) | 519, 1044 |
| BmsI | GCATC | 5 cut(s) | 366, 786, 950, 1044, 1109 |
| BpiI | GAAGAC | 2 cut(s) | 811, 854 |
| BsaBI | GATNNNNATC | 1 cut(s) | 726 |
| BsaI | GGTCTC | 1 cut(s) | 1067 |
| BsaWI | WCCGGW | 2 cut(s) | 567, 976 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 325 |
| Bse1I | ACTGG | 4 cut(s) | 157, 278, 519, 575 |
| Bse3DI | GCAATG | 1 cut(s) | 1095 |
| Bse8I | GATNNNNATC | 1 cut(s) | 726 |
| BseGI | GGATG | 2 cut(s) | 10, 100 |
| BseJI | GATNNNNATC | 1 cut(s) | 726 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BseMI | GCAATG | 1 cut(s) | 1095 |
| BseMII | CTCAG | 3 cut(s) | 92, 393, 1038 |
| BseNI | ACTGG | 4 cut(s) | 157, 278, 519, 575 |
| BseRI | GAGGAG | 1 cut(s) | 211 |
| BseXI | GCAGC | 2 cut(s) | 347, 778 |
| BshFI | GGCC | 1 cut(s) | 348 |
| BsiSI | CCGG | 2 cut(s) | 568, 977 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BsmAI | GTCTC | 3 cut(s) | 141, 748, 1067 |
| BsmI | GAATGC | 1 cut(s) | 8 |
| BsnI | GGCC | 1 cut(s) | 348 |
| Bso31I | GGTCTC | 1 cut(s) | 1067 |
| Bsp143I | GATC | 3 cut(s) | 517, 561, 790 |
| BspANI | GGCC | 1 cut(s) | 348 |
| BspCNI | CTCAG | 3 cut(s) | 91, 394, 1039 |
| BspLI | GGNNCC | 2 cut(s) | 519, 1044 |
| BspMI | ACCTGC | 1 cut(s) | 407 |
| BspPI | GGATC | 3 cut(s) | 512, 525, 556 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BspTNI | GGTCTC | 1 cut(s) | 1067 |
| BsrDI | GCAATG | 1 cut(s) | 1095 |
| BsrI | ACTGG | 4 cut(s) | 157, 278, 519, 575 |
| BssMI | GATC | 3 cut(s) | 517, 561, 790 |
| Bst4CI | ACNGT | 9 cut(s) | 85, 104, 142, 267, 544, 644, 810, 883, 970 |
| Bst6I | CTCTTC | 2 cut(s) | 462, 831 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 3 cut(s) | 285, 899, 1123 |
| BstDEI | CTNAG | 3 cut(s) | 78, 402, 1047 |
| BstF5I | GGATG | 2 cut(s) | 10, 100 |
| BstKTI | GATC | 3 cut(s) | 520, 564, 793 |
| BstMAI | GTCTC | 3 cut(s) | 141, 748, 1067 |
| BstMBI | GATC | 3 cut(s) | 517, 561, 790 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 354 |
| BstNSI | RCATGY | 1 cut(s) | 357 |
| BstV1I | GCAGC | 2 cut(s) | 347, 778 |
| BstV2I | GAAGAC | 2 cut(s) | 811, 854 |
| BstX2I | RGATCY | 2 cut(s) | 517, 790 |
| BstYI | RGATCY | 2 cut(s) | 517, 790 |
| BsuI | GTATCC | 1 cut(s) | 822 |
| BsuRI | GGCC | 1 cut(s) | 348 |
| BtsCI | GGATG | 2 cut(s) | 10, 100 |
| BtsI | GCAGTG | 1 cut(s) | 552 |
| BtsIMutI | CAGTG | 9 cut(s) | 138, 150, 285, 512, 549, 552, 649, 966, 1113 |
| BveI | ACCTGC | 1 cut(s) | 407 |
| Cac8I | GCNNGC | 3 cut(s) | 285, 899, 1123 |
| Cfr13I | GGNCC | 1 cut(s) | 64 |
| Csp6I | GTAC | 3 cut(s) | 86, 434, 443 |
| CviAII | CATG | 4 cut(s) | 354, 532, 668, 690 |
| CviQI | GTAC | 3 cut(s) | 86, 434, 443 |
| DdeI | CTNAG | 3 cut(s) | 78, 402, 1047 |
| DpnI | GATC | 3 cut(s) | 519, 563, 792 |
| DpnII | GATC | 3 cut(s) | 517, 561, 790 |
| DraI | TTTAAA | 1 cut(s) | 619 |
| Eam1104I | CTCTTC | 2 cut(s) | 462, 831 |
| EarI | CTCTTC | 2 cut(s) | 462, 831 |
| Eco31I | GGTCTC | 1 cut(s) | 1067 |
| Eco32I | GATATC | 2 cut(s) | 208, 1095 |
| Eco47I | GGWCC | 1 cut(s) | 64 |
| Eco57I | CTGAAG | 2 cut(s) | 647, 1121 |
| EcoRV | GATATC | 2 cut(s) | 208, 1095 |
| EcoT22I | ATGCAT | 2 cut(s) | 10, 359 |
| FaeI | CATG | 4 cut(s) | 357, 535, 671, 693 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 482, 514, 920, 952, 1119, 1151 |
| FatI | CATG | 4 cut(s) | 353, 531, 667, 689 |
| Fnu4HI | GCNGC | 2 cut(s) | 336, 767 |
| FokI | GGATG | 2 cut(s) | 17, 107 |
| Fsp4HI | GCNGC | 2 cut(s) | 336, 767 |
| FspBI | CTAG | 1 cut(s) | 237 |
| GluI | GCNGC | 2 cut(s) | 336, 767 |
| HaeIII | GGCC | 1 cut(s) | 348 |
| HapII | CCGG | 2 cut(s) | 568, 977 |
| Hin1II | CATG | 4 cut(s) | 357, 535, 671, 693 |
| HincII | GTYRAC | 1 cut(s) | 309 |
| HindII | GTYRAC | 1 cut(s) | 309 |
| HinfI | GANTC | 2 cut(s) | 76, 164 |
| HpaII | CCGG | 2 cut(s) | 568, 977 |
| HphI | GGTGA | 5 cut(s) | 239, 431, 659, 700, 808 |
| Hpy166II | GTNNAC | 3 cut(s) | 100, 309, 799 |
| Hpy188I | TCNGA | 6 cut(s) | 81, 146, 212, 747, 911, 1140 |
| Hpy188III | TCNNGA | 6 cut(s) | 371, 409, 521, 716, 788, 833 |
| Hpy8I | GTNNAC | 3 cut(s) | 100, 309, 799 |
| HpyAV | CCTTC | 3 cut(s) | 53, 229, 1063 |
| HpyCH4III | ACNGT | 9 cut(s) | 85, 104, 142, 267, 544, 644, 810, 883, 970 |
| HpyCH4V | TGCA | 6 cut(s) | 8, 357, 552, 676, 941, 1035 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 354 |
| HpyF3I | CTNAG | 3 cut(s) | 78, 402, 1047 |
| Hsp92II | CATG | 4 cut(s) | 357, 535, 671, 693 |
| Kzo9I | GATC | 3 cut(s) | 517, 561, 790 |
| LmnI | GCTCC | 2 cut(s) | 1042, 1085 |
| Lsp1109I | GCAGC | 2 cut(s) | 347, 778 |
| LweI | GCATC | 5 cut(s) | 366, 786, 950, 1044, 1109 |
| MaeI | CTAG | 1 cut(s) | 237 |
| MaeIII | GTNAC | 7 cut(s) | 136, 227, 328, 419, 692, 706, 970 |
| MalI | GATC | 3 cut(s) | 519, 563, 792 |
| MboI | GATC | 3 cut(s) | 517, 561, 790 |
| MboII | GAAGA | 4 cut(s) | 479, 816, 848, 859 |
| MfeI | CAATTG | 2 cut(s) | 387, 781 |
| MflI | RGATCY | 2 cut(s) | 517, 790 |
| MluCI | AATT | 9 cut(s) | 158, 190, 213, 314, 387, 503, 650, 654, 781 |
| MlyI | GAGTC | 1 cut(s) | 70 |
| MmeI | TCCRAC | 2 cut(s) | 839, 1013 |
| MnlI | CCTC | 9 cut(s) | 24, 55, 66, 189, 192, 196, 575, 593, 631 |
| Mph1103I | ATGCAT | 2 cut(s) | 10, 359 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1134 |
| MseI | TTAA | 9 cut(s) | 36, 90, 261, 302, 506, 618, 653, 663, 843 |
| MslI | CAYNNNNRTG | 2 cut(s) | 746, 979 |
| MspA1I | CMGCKG | 1 cut(s) | 769 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 2 cut(s) | 568, 977 |
| MunI | CAATTG | 2 cut(s) | 387, 781 |
| Mva1269I | GAATGC | 1 cut(s) | 8 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 354 |
| NdeII | GATC | 3 cut(s) | 517, 561, 790 |
| NlaIII | CATG | 4 cut(s) | 357, 535, 671, 693 |
| NlaIV | GGNNCC | 2 cut(s) | 519, 1044 |
| NmuCI | GTSAC | 4 cut(s) | 136, 227, 419, 706 |
| NsiI | ATGCAT | 2 cut(s) | 10, 359 |
| NspI | RCATGY | 1 cut(s) | 357 |
| OliI | CACNNNNGTG | 1 cut(s) | 979 |
| PaqCI | CACCTGC | 1 cut(s) | 407 |
| PctI | GAATGC | 1 cut(s) | 8 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1134 |
| PfeI | GAWTC | 1 cut(s) | 164 |
| PkrI | GCNGC | 2 cut(s) | 337, 768 |
| PleI | GAGTC | 1 cut(s) | 70 |
| PpsI | GAGTC | 1 cut(s) | 70 |
| PshBI | ATTAAT | 1 cut(s) | 653 |
| PspN4I | GGNNCC | 2 cut(s) | 519, 1044 |
| PspPI | GGNCC | 1 cut(s) | 64 |
| PsuI | RGATCY | 2 cut(s) | 517, 790 |
| PvuII | CAGCTG | 1 cut(s) | 769 |
| RsaI | GTAC | 3 cut(s) | 87, 435, 444 |
| RsaNI | GTAC | 3 cut(s) | 86, 434, 443 |
| RseI | CAYNNNNRTG | 2 cut(s) | 746, 979 |
| SaqAI | TTAA | 9 cut(s) | 36, 90, 261, 302, 506, 618, 653, 663, 843 |
| SatI | GCNGC | 2 cut(s) | 336, 767 |
| Sau3AI | GATC | 3 cut(s) | 517, 561, 790 |
| Sau96I | GGNCC | 1 cut(s) | 64 |
| ScaI | AGTACT | 2 cut(s) | 87, 435 |
| SchI | GAGTC | 1 cut(s) | 70 |
| SfaNI | GCATC | 5 cut(s) | 366, 786, 950, 1044, 1109 |
| SinI | GGWCC | 1 cut(s) | 64 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 746, 979 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 9 cut(s) | 158, 190, 213, 314, 387, 503, 650, 654, 781 |
| SspMI | CTAG | 1 cut(s) | 237 |
| TaaI | ACNGT | 9 cut(s) | 85, 104, 142, 267, 544, 644, 810, 883, 970 |
| TaqI | TCGA | 4 cut(s) | 410, 560, 715, 885 |
| TaqII | GACCGA | 1 cut(s) | 484 |
| TasI | AATT | 9 cut(s) | 158, 190, 213, 314, 387, 503, 650, 654, 781 |
| TatI | WGTACW | 2 cut(s) | 85, 433 |
| TfiI | GAWTC | 1 cut(s) | 164 |
| Tru1I | TTAA | 9 cut(s) | 36, 90, 261, 302, 506, 618, 653, 663, 843 |
| Tru9I | TTAA | 9 cut(s) | 36, 90, 261, 302, 506, 618, 653, 663, 843 |
| TscAI | CASTG | 9 cut(s) | 145, 157, 285, 519, 549, 559, 649, 973, 1113 |
| TseFI | GTSAC | 4 cut(s) | 136, 227, 419, 706 |
| TseI | GCWGC | 2 cut(s) | 335, 766 |
| Tsp45I | GTSAC | 4 cut(s) | 136, 227, 419, 706 |
| TspDTI | ATGAA | 6 cut(s) | 21, 35, 488, 548, 873, 903 |
| TspRI | CASTG | 9 cut(s) | 145, 157, 285, 519, 549, 559, 649, 973, 1113 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 64 |
| VspI | ATTAAT | 1 cut(s) | 653 |
| XapI | RAATTY | 2 cut(s) | 190, 314 |
| XceI | RCATGY | 1 cut(s) | 357 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1134 |
| XspI | CTAG | 1 cut(s) | 237 |
| ZrmI | AGTACT | 2 cut(s) | 87, 435 |
| Zsp2I | ATGCAT | 2 cut(s) | 10, 359 |