DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 39 - 118 | 7.6e-06 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 440 |
| AclWI | GGATC | 1 cut(s) | 365 |
| AcoI | YGGCCR | 1 cut(s) | 229 |
| AcsI | RAATTY | 1 cut(s) | 372 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 442 |
| AgsI | TTSAA | 5 cut(s) | 11, 257, 380, 412, 550 |
| AjnI | CCWGG | 1 cut(s) | 415 |
| AluBI | AGCT | 3 cut(s) | 85, 101, 400 |
| AluI | AGCT | 3 cut(s) | 85, 101, 400 |
| Alw26I | GTCTC | 1 cut(s) | 257 |
| AlwI | GGATC | 1 cut(s) | 365 |
| AoxI | GGCC | 1 cut(s) | 229 |
| ApeKI | GCWGC | 3 cut(s) | 82, 223, 400 |
| ApoI | RAATTY | 1 cut(s) | 372 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 375, 459 |
| AspS9I | GGNCC | 2 cut(s) | 620, 678 |
| AvaII | GGWCC | 2 cut(s) | 620, 678 |
| BbvI | GCAGC | 3 cut(s) | 94, 235, 387 |
| BccI | CCATC | 1 cut(s) | 125 |
| BceAI | ACGGC | 1 cut(s) | 244 |
| BciT130I | CCWGG | 1 cut(s) | 417 |
| BclI | TGATCA | 1 cut(s) | 268 |
| BcoDI | GTCTC | 1 cut(s) | 257 |
| BfaI | CTAG | 2 cut(s) | 185, 629 |
| BfmI | CTRYAG | 1 cut(s) | 94 |
| BisI | GCNGC | 3 cut(s) | 83, 224, 401 |
| BlsI | GCNGC | 3 cut(s) | 84, 225, 402 |
| Bme1390I | CCNGG | 1 cut(s) | 417 |
| Bme18I | GGWCC | 2 cut(s) | 620, 678 |
| BmgT120I | GGNCC | 2 cut(s) | 620, 678 |
| BmiI | GGNNCC | 1 cut(s) | 679 |
| BmrFI | CCNGG | 1 cut(s) | 417 |
| BmsI | GCATC | 1 cut(s) | 140 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 442 |
| BseBI | CCWGG | 1 cut(s) | 417 |
| BseGI | GGATG | 1 cut(s) | 155 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 442 |
| BseXI | GCAGC | 3 cut(s) | 94, 235, 387 |
| BshFI | GGCC | 1 cut(s) | 231 |
| BslFI | GGGAC | 1 cut(s) | 691 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 442 |
| BsmAI | GTCTC | 1 cut(s) | 257 |
| BsmFI | GGGAC | 1 cut(s) | 691 |
| BsnI | GGCC | 1 cut(s) | 231 |
| Bsp143I | GATC | 4 cut(s) | 268, 357, 393, 578 |
| BspANI | GGCC | 1 cut(s) | 231 |
| BspLI | GGNNCC | 1 cut(s) | 679 |
| BspMAI | CTGCAG | 1 cut(s) | 98 |
| BspPI | GGATC | 1 cut(s) | 365 |
| BssMI | GATC | 4 cut(s) | 268, 357, 393, 578 |
| Bst2UI | CCWGG | 1 cut(s) | 417 |
| Bst4CI | ACNGT | 1 cut(s) | 25 |
| Bst6I | CTCTTC | 2 cut(s) | 252, 527 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 220 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 440 |
| BstF5I | GGATG | 1 cut(s) | 155 |
| BstKTI | GATC | 4 cut(s) | 271, 360, 396, 581 |
| BstMAI | GTCTC | 1 cut(s) | 257 |
| BstMBI | GATC | 4 cut(s) | 268, 357, 393, 578 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 159, 220, 638 |
| BstNI | CCWGG | 1 cut(s) | 417 |
| BstNSI | RCATGY | 1 cut(s) | 281 |
| BstSCI | CCNGG | 1 cut(s) | 415 |
| BstSFI | CTRYAG | 1 cut(s) | 94 |
| BstV1I | GCAGC | 3 cut(s) | 94, 235, 387 |
| BsuRI | GGCC | 1 cut(s) | 231 |
| BtsCI | GGATG | 1 cut(s) | 155 |
| Cfr13I | GGNCC | 2 cut(s) | 620, 678 |
| CviAII | CATG | 3 cut(s) | 215, 278, 324 |
| CviJI | RGCY | 6 cut(s) | 85, 101, 231, 400, 603, 632 |
| CviKI_1 | RGCY | 6 cut(s) | 85, 101, 231, 400, 603, 632 |
| DpnI | GATC | 4 cut(s) | 270, 359, 395, 580 |
| DpnII | GATC | 4 cut(s) | 268, 357, 393, 578 |
| DraI | TTTAAA | 1 cut(s) | 51 |
| EaeI | YGGCCR | 1 cut(s) | 229 |
| Eam1104I | CTCTTC | 2 cut(s) | 252, 527 |
| EarI | CTCTTC | 2 cut(s) | 252, 527 |
| Eco32I | GATATC | 1 cut(s) | 487 |
| Eco47I | GGWCC | 2 cut(s) | 620, 678 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 440 |
| EcoO109I | RGGNCCY | 1 cut(s) | 620 |
| EcoRII | CCWGG | 1 cut(s) | 415 |
| EcoRV | GATATC | 1 cut(s) | 487 |
| FaeI | CATG | 3 cut(s) | 218, 281, 327 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 360, 392 |
| FaqI | GGGAC | 1 cut(s) | 691 |
| FatI | CATG | 3 cut(s) | 214, 277, 323 |
| FauNDI | CATATG | 1 cut(s) | 203 |
| FbaI | TGATCA | 1 cut(s) | 268 |
| Fnu4HI | GCNGC | 3 cut(s) | 83, 224, 401 |
| FokI | GGATG | 1 cut(s) | 162 |
| Fsp4HI | GCNGC | 3 cut(s) | 83, 224, 401 |
| FspBI | CTAG | 2 cut(s) | 185, 629 |
| GluI | GCNGC | 3 cut(s) | 83, 224, 401 |
| HaeIII | GGCC | 1 cut(s) | 231 |
| Hin1II | CATG | 3 cut(s) | 218, 281, 327 |
| HinfI | GANTC | 1 cut(s) | 318 |
| Hpy166II | GTNNAC | 2 cut(s) | 463, 471 |
| Hpy188I | TCNGA | 2 cut(s) | 46, 611 |
| Hpy188III | TCNNGA | 1 cut(s) | 11 |
| Hpy8I | GTNNAC | 2 cut(s) | 463, 471 |
| HpyAV | CCTTC | 2 cut(s) | 380, 532 |
| HpyCH4III | ACNGT | 1 cut(s) | 25 |
| HpyCH4V | TGCA | 4 cut(s) | 96, 223, 281, 646 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 159, 220, 638 |
| Hsp92II | CATG | 3 cut(s) | 218, 281, 327 |
| Ksp22I | TGATCA | 1 cut(s) | 268 |
| Kzo9I | GATC | 4 cut(s) | 268, 357, 393, 578 |
| LmnI | GCTCC | 1 cut(s) | 79 |
| LpnPI | CCDG | 4 cut(s) | 131, 402, 429, 651 |
| Lsp1109I | GCAGC | 3 cut(s) | 94, 235, 387 |
| LweI | GCATC | 1 cut(s) | 140 |
| MaeI | CTAG | 2 cut(s) | 185, 629 |
| MaeIII | GTNAC | 1 cut(s) | 241 |
| MalI | GATC | 4 cut(s) | 270, 359, 395, 580 |
| MboI | GATC | 4 cut(s) | 268, 357, 393, 578 |
| MluCI | AATT | 5 cut(s) | 117, 372, 380, 407, 542 |
| MmeI | TCCRAC | 1 cut(s) | 634 |
| MnlI | CCTC | 4 cut(s) | 168, 322, 528, 611 |
| MroXI | GAANNNNTTC | 2 cut(s) | 375, 459 |
| MseI | TTAA | 3 cut(s) | 50, 87, 287 |
| MspR9I | CCNGG | 1 cut(s) | 417 |
| MvaI | CCWGG | 1 cut(s) | 417 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 159, 220, 638 |
| NdeI | CATATG | 1 cut(s) | 203 |
| NdeII | GATC | 4 cut(s) | 268, 357, 393, 578 |
| NlaIII | CATG | 3 cut(s) | 218, 281, 327 |
| NlaIV | GGNNCC | 1 cut(s) | 679 |
| NmuCI | GTSAC | 1 cut(s) | 241 |
| NspI | RCATGY | 1 cut(s) | 281 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 512 |
| PdmI | GAANNNNTTC | 2 cut(s) | 375, 459 |
| PfeI | GAWTC | 1 cut(s) | 318 |
| PkrI | GCNGC | 3 cut(s) | 84, 225, 402 |
| PpuMI | RGGWCCY | 1 cut(s) | 620 |
| PsiI | TTATAA | 1 cut(s) | 440 |
| Psp5II | RGGWCCY | 1 cut(s) | 620 |
| Psp6I | CCWGG | 1 cut(s) | 415 |
| PspGI | CCWGG | 1 cut(s) | 415 |
| PspN4I | GGNNCC | 1 cut(s) | 679 |
| PspPI | GGNCC | 2 cut(s) | 620, 678 |
| PspPPI | RGGWCCY | 1 cut(s) | 620 |
| PstI | CTGCAG | 1 cut(s) | 98 |
| SaqAI | TTAA | 3 cut(s) | 50, 87, 287 |
| SatI | GCNGC | 3 cut(s) | 83, 224, 401 |
| Sau3AI | GATC | 4 cut(s) | 268, 357, 393, 578 |
| Sau96I | GGNCC | 2 cut(s) | 620, 678 |
| ScrFI | CCNGG | 1 cut(s) | 417 |
| SetI | ASST | 5 cut(s) | 57, 87, 103, 402, 625 |
| SfaNI | GCATC | 1 cut(s) | 140 |
| SfcI | CTRYAG | 1 cut(s) | 94 |
| SinI | GGWCC | 2 cut(s) | 620, 678 |
| Sse9I | AATT | 5 cut(s) | 117, 372, 380, 407, 542 |
| SspI | AATATT | 1 cut(s) | 522 |
| SspMI | CTAG | 2 cut(s) | 185, 629 |
| StyD4I | CCNGG | 1 cut(s) | 415 |
| TaaI | ACNGT | 1 cut(s) | 25 |
| TaqI | TCGA | 1 cut(s) | 489 |
| TasI | AATT | 5 cut(s) | 117, 372, 380, 407, 542 |
| TfiI | GAWTC | 1 cut(s) | 318 |
| Tru1I | TTAA | 3 cut(s) | 50, 87, 287 |
| Tru9I | TTAA | 3 cut(s) | 50, 87, 287 |
| TseFI | GTSAC | 1 cut(s) | 241 |
| TseI | GCWGC | 3 cut(s) | 82, 223, 400 |
| Tsp45I | GTSAC | 1 cut(s) | 241 |
| VpaK11BI | GGWCC | 2 cut(s) | 620, 678 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 440 |
| XapI | RAATTY | 1 cut(s) | 372 |
| XceI | RCATGY | 1 cut(s) | 281 |
| XmnI | GAANNNNTTC | 2 cut(s) | 375, 459 |
| XspI | CTAG | 2 cut(s) | 185, 629 |