DNA recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 944 |
| Acc36I | ACCTGC | 3 cut(s) | 793, 881, 944 |
| AccI | GTMKAC | 1 cut(s) | 225 |
| AciI | CCGC | 2 cut(s) | 1151, 1192 |
| AcoI | YGGCCR | 3 cut(s) | 213, 1000, 1266 |
| AcsI | RAATTY | 1 cut(s) | 566 |
| AcuI | CTGAAG | 2 cut(s) | 770, 971 |
| AfaI | GTAC | 1 cut(s) | 673 |
| AflIII | ACRYGT | 2 cut(s) | 674, 1100 |
| AgsI | TTSAA | 9 cut(s) | 110, 237, 304, 442, 535, 730, 832, 1022, 1034 |
| AjnI | CCWGG | 2 cut(s) | 248, 921 |
| AluBI | AGCT | 8 cut(s) | 29, 445, 770, 970, 1018, 1058, 1111, 1415 |
| AluI | AGCT | 8 cut(s) | 29, 445, 770, 970, 1018, 1058, 1111, 1415 |
| Alw21I | GWGCWC | 1 cut(s) | 592 |
| Alw26I | GTCTC | 4 cut(s) | 76, 503, 698, 900 |
| AoxI | GGCC | 4 cut(s) | 213, 482, 1000, 1266 |
| ApeKI | GCWGC | 3 cut(s) | 939, 1076, 1318 |
| ApoI | RAATTY | 1 cut(s) | 566 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1073, 1105 |
| AseI | ATTAAT | 1 cut(s) | 657 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 95 |
| AspLEI | GCGC | 1 cut(s) | 292 |
| AsuHPI | GGTGA | 2 cut(s) | 481, 1126 |
| AxyI | CCTNAGG | 1 cut(s) | 1287 |
| BalI | TGGCCA | 2 cut(s) | 1002, 1268 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1220, 1252 |
| BbsI | GAAGAC | 1 cut(s) | 1041 |
| Bbv12I | GWGCWC | 1 cut(s) | 592 |
| BbvI | GCAGC | 3 cut(s) | 951, 1088, 1330 |
| BccI | CCATC | 5 cut(s) | 113, 352, 470, 906, 1011 |
| BciT130I | CCWGG | 2 cut(s) | 250, 923 |
| BcoDI | GTCTC | 4 cut(s) | 76, 503, 698, 900 |
| BfaI | CTAG | 1 cut(s) | 771 |
| BfmI | CTRYAG | 2 cut(s) | 486, 937 |
| BfuAI | ACCTGC | 3 cut(s) | 793, 881, 944 |
| BisI | GCNGC | 3 cut(s) | 940, 1077, 1319 |
| BlsI | GCNGC | 3 cut(s) | 941, 1078, 1320 |
| Bme1390I | CCNGG | 2 cut(s) | 250, 923 |
| BmrFI | CCNGG | 2 cut(s) | 250, 923 |
| BmrI | ACTGGG | 1 cut(s) | 672 |
| BmsI | GCATC | 3 cut(s) | 145, 569, 1305 |
| BmuI | ACTGGG | 1 cut(s) | 672 |
| BoxI | GACNNNNGTC | 1 cut(s) | 858 |
| BpiI | GAAGAC | 1 cut(s) | 1041 |
| BpmI | CTGGAG | 2 cut(s) | 232, 585 |
| BpuEI | CTTGAG | 1 cut(s) | 1401 |
| Bsa29I | ATCGAT | 1 cut(s) | 347 |
| BsaAI | YACGTR | 1 cut(s) | 587 |
| BsaJI | CCNNGG | 3 cut(s) | 249, 985, 1322 |
| Bse118I | RCCGGY | 1 cut(s) | 215 |
| Bse1I | ACTGG | 2 cut(s) | 602, 667 |
| Bse21I | CCTNAGG | 1 cut(s) | 1287 |
| Bse3DI | GCAATG | 2 cut(s) | 134, 226 |
| BseBI | CCWGG | 2 cut(s) | 250, 923 |
| BseCI | ATCGAT | 1 cut(s) | 347 |
| BseDI | CCNNGG | 3 cut(s) | 249, 985, 1322 |
| BseGI | GGATG | 7 cut(s) | 84, 507, 672, 917, 1003, 1219, 1237 |
| BseMI | GCAATG | 2 cut(s) | 134, 226 |
| BseMII | CTCAG | 7 cut(s) | 329, 347, 368, 471, 693, 1256, 1301 |
| BseNI | ACTGG | 2 cut(s) | 602, 667 |
| BseRI | GAGGAG | 3 cut(s) | 588, 1121, 1398 |
| BseXI | GCAGC | 3 cut(s) | 951, 1088, 1330 |
| BshFI | GGCC | 4 cut(s) | 215, 484, 1002, 1268 |
| BshVI | ATCGAT | 1 cut(s) | 347 |
| BsiHKAI | GWGCWC | 1 cut(s) | 592 |
| BsiSI | CCGG | 1 cut(s) | 216 |
| BsmAI | GTCTC | 4 cut(s) | 76, 503, 698, 900 |
| BsmBI | CGTCTC | 2 cut(s) | 503, 900 |
| BsmI | GAATGC | 1 cut(s) | 696 |
| BsnI | GGCC | 4 cut(s) | 215, 484, 1002, 1268 |
| Bsp1286I | GDGCHC | 1 cut(s) | 592 |
| Bsp143I | GATC | 4 cut(s) | 609, 793, 802, 1433 |
| Bsp19I | CCATGG | 1 cut(s) | 985 |
| BspACI | CCGC | 2 cut(s) | 1151, 1192 |
| BspANI | GGCC | 4 cut(s) | 215, 484, 1002, 1268 |
| BspCNI | CTCAG | 7 cut(s) | 328, 346, 367, 470, 694, 1255, 1300 |
| BspDI | ATCGAT | 1 cut(s) | 347 |
| BspMAI | CTGCAG | 2 cut(s) | 490, 941 |
| BspMI | ACCTGC | 3 cut(s) | 793, 881, 944 |
| BsrDI | GCAATG | 2 cut(s) | 134, 226 |
| BsrFI | RCCGGY | 1 cut(s) | 215 |
| BsrI | ACTGG | 2 cut(s) | 602, 667 |
| BssAI | RCCGGY | 1 cut(s) | 215 |
| BssECI | CCNNGG | 3 cut(s) | 249, 985, 1322 |
| BssMI | GATC | 4 cut(s) | 609, 793, 802, 1433 |
| BssT1I | CCWWGG | 2 cut(s) | 985, 1322 |
| Bst2UI | CCWGG | 2 cut(s) | 250, 923 |
| Bst4CI | ACNGT | 4 cut(s) | 9, 114, 469, 820 |
| BstBAI | YACGTR | 1 cut(s) | 587 |
| BstC8I | GCNNGC | 5 cut(s) | 125, 217, 486, 928, 1155 |
| BstDEI | CTNAG | 9 cut(s) | 315, 333, 354, 457, 702, 1208, 1222, 1242, 1287 |
| BstDSI | CCRYGG | 1 cut(s) | 985 |
| BstF5I | GGATG | 7 cut(s) | 84, 507, 672, 917, 1003, 1219, 1237 |
| BstHHI | GCGC | 1 cut(s) | 292 |
| BstKTI | GATC | 4 cut(s) | 612, 796, 805, 1436 |
| BstMAI | GTCTC | 4 cut(s) | 76, 503, 698, 900 |
| BstMBI | GATC | 4 cut(s) | 609, 793, 802, 1433 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 164, 289, 337, 936, 1310 |
| BstNI | CCWGG | 2 cut(s) | 250, 923 |
| BstNSI | RCATGY | 1 cut(s) | 678 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 858 |
| BstSCI | CCNGG | 2 cut(s) | 248, 921 |
| BstSFI | CTRYAG | 2 cut(s) | 486, 937 |
| BstV1I | GCAGC | 3 cut(s) | 951, 1088, 1330 |
| BstV2I | GAAGAC | 1 cut(s) | 1041 |
| Bsu15I | ATCGAT | 1 cut(s) | 347 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1287 |
| BsuRI | GGCC | 4 cut(s) | 215, 484, 1002, 1268 |
| BsuTUI | ATCGAT | 1 cut(s) | 347 |
| BtgI | CCRYGG | 1 cut(s) | 985 |
| BtgZI | GCGATG | 1 cut(s) | 1328 |
| BtsCI | GGATG | 7 cut(s) | 84, 507, 672, 917, 1003, 1219, 1237 |
| BtsI | GCAGTG | 1 cut(s) | 495 |
| BtsIMutI | CAGTG | 4 cut(s) | 5, 495, 816, 829 |
| BveI | ACCTGC | 3 cut(s) | 793, 881, 944 |
| Cac8I | GCNNGC | 5 cut(s) | 125, 217, 486, 928, 1155 |
| CfoI | GCGC | 1 cut(s) | 292 |
| Cfr10I | RCCGGY | 1 cut(s) | 215 |
| ClaI | ATCGAT | 1 cut(s) | 347 |
| CseI | GACGC | 2 cut(s) | 485, 581 |
| Csp6I | GTAC | 1 cut(s) | 672 |
| CviAII | CATG | 6 cut(s) | 164, 284, 580, 675, 743, 986 |
| CviQI | GTAC | 1 cut(s) | 672 |
| DdeI | CTNAG | 9 cut(s) | 315, 333, 354, 457, 702, 1208, 1222, 1242, 1287 |
| DpnI | GATC | 4 cut(s) | 611, 795, 804, 1435 |
| DpnII | GATC | 4 cut(s) | 609, 793, 802, 1433 |
| DraI | TTTAAA | 1 cut(s) | 1353 |
| EaeI | YGGCCR | 3 cut(s) | 213, 1000, 1266 |
| EciI | GGCGGA | 1 cut(s) | 1207 |
| Eco130I | CCWWGG | 2 cut(s) | 985, 1322 |
| Eco147I | AGGCCT | 1 cut(s) | 484 |
| Eco57I | CTGAAG | 2 cut(s) | 770, 971 |
| Eco81I | CCTNAGG | 1 cut(s) | 1287 |
| EcoRII | CCWGG | 2 cut(s) | 248, 921 |
| EcoT14I | CCWWGG | 2 cut(s) | 985, 1322 |
| EcoT22I | ATGCAT | 1 cut(s) | 169 |
| ErhI | CCWWGG | 2 cut(s) | 985, 1322 |
| Esp3I | CGTCTC | 2 cut(s) | 503, 900 |
| FaeI | CATG | 6 cut(s) | 167, 287, 583, 678, 746, 989 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 279, 311 |
| FatI | CATG | 6 cut(s) | 163, 283, 579, 674, 742, 985 |
| FblI | GTMKAC | 1 cut(s) | 225 |
| Fnu4HI | GCNGC | 3 cut(s) | 940, 1077, 1319 |
| FokI | GGATG | 7 cut(s) | 91, 494, 679, 924, 990, 1226, 1244 |
| Fsp4HI | GCNGC | 3 cut(s) | 940, 1077, 1319 |
| FspBI | CTAG | 1 cut(s) | 771 |
| GlaI | GCGC | 1 cut(s) | 291 |
| GluI | GCNGC | 3 cut(s) | 940, 1077, 1319 |
| GsuI | CTGGAG | 2 cut(s) | 232, 585 |
| HaeIII | GGCC | 4 cut(s) | 215, 484, 1002, 1268 |
| HapII | CCGG | 1 cut(s) | 216 |
| HgaI | GACGC | 2 cut(s) | 485, 581 |
| HhaI | GCGC | 1 cut(s) | 292 |
| Hin1II | CATG | 6 cut(s) | 167, 287, 583, 678, 746, 989 |
| Hin6I | GCGC | 1 cut(s) | 290 |
| HinP1I | GCGC | 1 cut(s) | 290 |
| HincII | GTYRAC | 2 cut(s) | 142, 618 |
| HindII | GTYRAC | 2 cut(s) | 142, 618 |
| HindIII | AAGCTT | 2 cut(s) | 968, 1016 |
| HinfI | GANTC | 7 cut(s) | 69, 160, 349, 832, 859, 1046, 1297 |
| HpaII | CCGG | 1 cut(s) | 216 |
| HphI | GGTGA | 2 cut(s) | 481, 1126 |
| Hpy166II | GTNNAC | 5 cut(s) | 142, 226, 618, 980, 1237 |
| Hpy188III | TCNNGA | 4 cut(s) | 701, 791, 905, 963 |
| Hpy8I | GTNNAC | 5 cut(s) | 142, 226, 618, 980, 1237 |
| HpyAV | CCTTC | 5 cut(s) | 193, 332, 529, 1222, 1382 |
| HpyCH4III | ACNGT | 4 cut(s) | 9, 114, 469, 820 |
| HpyCH4IV | ACGT | 4 cut(s) | 387, 586, 1100, 1394 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 164, 289, 337, 936, 1310 |
| HpyF3I | CTNAG | 9 cut(s) | 315, 333, 354, 457, 702, 1208, 1222, 1242, 1287 |
| HpySE526I | ACGT | 4 cut(s) | 387, 586, 1100, 1394 |
| Hsp92II | CATG | 6 cut(s) | 167, 287, 583, 678, 746, 989 |
| HspAI | GCGC | 1 cut(s) | 290 |
| KroI | GCCGGC | 1 cut(s) | 215 |
| KroNI | GCCGGC | 1 cut(s) | 217 |
| Kzo9I | GATC | 4 cut(s) | 609, 793, 802, 1433 |
| LmnI | GCTCC | 2 cut(s) | 793, 1108 |
| Lsp1109I | GCAGC | 3 cut(s) | 951, 1088, 1330 |
| LweI | GCATC | 3 cut(s) | 145, 569, 1305 |
| MaeI | CTAG | 1 cut(s) | 771 |
| MaeII | ACGT | 4 cut(s) | 387, 586, 1100, 1394 |
| MaeIII | GTNAC | 2 cut(s) | 538, 1096 |
| MalI | GATC | 4 cut(s) | 611, 795, 804, 1435 |
| MboI | GATC | 4 cut(s) | 609, 793, 802, 1433 |
| MboII | GAAGA | 7 cut(s) | 103, 203, 235, 763, 1046, 1052, 1142 |
| MhlI | GDGCHC | 1 cut(s) | 592 |
| MlsI | TGGCCA | 2 cut(s) | 1002, 1268 |
| MluCI | AATT | 6 cut(s) | 21, 414, 566, 958, 996, 1022 |
| MluNI | TGGCCA | 2 cut(s) | 1002, 1268 |
| MlyI | GAGTC | 4 cut(s) | 78, 868, 1040, 1291 |
| Mox20I | TGGCCA | 2 cut(s) | 1002, 1268 |
| Mph1103I | ATGCAT | 1 cut(s) | 169 |
| MroNI | GCCGGC | 1 cut(s) | 215 |
| MroXI | GAANNNNTTC | 1 cut(s) | 95 |
| MscI | TGGCCA | 2 cut(s) | 1002, 1268 |
| MseI | TTAA | 3 cut(s) | 657, 957, 1352 |
| MslI | CAYNNNNRTG | 2 cut(s) | 153, 1361 |
| Msp20I | TGGCCA | 2 cut(s) | 1002, 1268 |
| MspI | CCGG | 1 cut(s) | 216 |
| MspR9I | CCNGG | 2 cut(s) | 250, 923 |
| Mva1269I | GAATGC | 1 cut(s) | 696 |
| MvaI | CCWGG | 2 cut(s) | 250, 923 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 164, 289, 337, 936, 1310 |
| NaeI | GCCGGC | 1 cut(s) | 217 |
| NcoI | CCATGG | 1 cut(s) | 985 |
| NdeII | GATC | 4 cut(s) | 609, 793, 802, 1433 |
| NgoMIV | GCCGGC | 1 cut(s) | 215 |
| NlaIII | CATG | 6 cut(s) | 167, 287, 583, 678, 746, 989 |
| NsiI | ATGCAT | 1 cut(s) | 169 |
| NspI | RCATGY | 1 cut(s) | 678 |
| PaqCI | CACCTGC | 1 cut(s) | 944 |
| PceI | AGGCCT | 1 cut(s) | 484 |
| PciI | ACATGT | 1 cut(s) | 674 |
| PctI | GAATGC | 1 cut(s) | 696 |
| PdiI | GCCGGC | 1 cut(s) | 217 |
| PdmI | GAANNNNTTC | 1 cut(s) | 95 |
| PfeI | GAWTC | 3 cut(s) | 160, 349, 832 |
| PflFI | GACNNNGTC | 1 cut(s) | 371 |
| PkrI | GCNGC | 3 cut(s) | 941, 1078, 1320 |
| PleI | GAGTC | 4 cut(s) | 77, 867, 1040, 1291 |
| PpsI | GAGTC | 4 cut(s) | 77, 867, 1040, 1291 |
| Ppu21I | YACGTR | 1 cut(s) | 587 |
| PscI | ACATGT | 1 cut(s) | 674 |
| PshAI | GACNNNNGTC | 1 cut(s) | 858 |
| PshBI | ATTAAT | 1 cut(s) | 657 |
| Psp6I | CCWGG | 2 cut(s) | 248, 921 |
| PspGI | CCWGG | 2 cut(s) | 248, 921 |
| PstI | CTGCAG | 2 cut(s) | 490, 941 |
| PsyI | GACNNNGTC | 1 cut(s) | 371 |
| RsaI | GTAC | 1 cut(s) | 673 |
| RsaNI | GTAC | 1 cut(s) | 672 |
| RseI | CAYNNNNRTG | 2 cut(s) | 153, 1361 |
| SaqAI | TTAA | 3 cut(s) | 657, 957, 1352 |
| SatI | GCNGC | 3 cut(s) | 940, 1077, 1319 |
| Sau3AI | GATC | 4 cut(s) | 609, 793, 802, 1433 |
| SchI | GAGTC | 4 cut(s) | 78, 868, 1040, 1291 |
| ScrFI | CCNGG | 2 cut(s) | 250, 923 |
| SduI | GDGCHC | 1 cut(s) | 592 |
| SfaNI | GCATC | 3 cut(s) | 145, 569, 1305 |
| SfcI | CTRYAG | 2 cut(s) | 486, 937 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 153, 1361 |
| SmlI | CTYRAG | 1 cut(s) | 1416 |
| SmoI | CTYRAG | 1 cut(s) | 1416 |
| Sse9I | AATT | 6 cut(s) | 21, 414, 566, 958, 996, 1022 |
| SseBI | AGGCCT | 1 cut(s) | 484 |
| SsiI | CCGC | 2 cut(s) | 1151, 1192 |
| SspMI | CTAG | 1 cut(s) | 771 |
| StuI | AGGCCT | 1 cut(s) | 484 |
| StyD4I | CCNGG | 2 cut(s) | 248, 921 |
| StyI | CCWWGG | 2 cut(s) | 985, 1322 |
| TaaI | ACNGT | 4 cut(s) | 9, 114, 469, 820 |
| TaiI | ACGT | 4 cut(s) | 390, 589, 1103, 1397 |
| TaqI | TCGA | 5 cut(s) | 67, 347, 375, 381, 904 |
| TasI | AATT | 6 cut(s) | 21, 414, 566, 958, 996, 1022 |
| TatI | WGTACW | 1 cut(s) | 671 |
| TfiI | GAWTC | 3 cut(s) | 160, 349, 832 |
| Tru1I | TTAA | 3 cut(s) | 657, 957, 1352 |
| Tru9I | TTAA | 3 cut(s) | 657, 957, 1352 |
| TscAI | CASTG | 4 cut(s) | 12, 495, 823, 829 |
| TseI | GCWGC | 3 cut(s) | 939, 1076, 1318 |
| TspDTI | ATGAA | 7 cut(s) | 152, 204, 300, 726, 1134, 1272, 1379 |
| TspGWI | ACGGA | 1 cut(s) | 924 |
| TspRI | CASTG | 4 cut(s) | 12, 495, 823, 829 |
| Tth111I | GACNNNGTC | 1 cut(s) | 371 |
| VspI | ATTAAT | 1 cut(s) | 657 |
| XapI | RAATTY | 1 cut(s) | 566 |
| XceI | RCATGY | 1 cut(s) | 678 |
| XmiI | GTMKAC | 1 cut(s) | 225 |
| XmnI | GAANNNNTTC | 1 cut(s) | 95 |
| XspI | CTAG | 1 cut(s) | 771 |
| Zsp2I | ATGCAT | 1 cut(s) | 169 |