DNA recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 18 |
| AciI | CCGC | 1 cut(s) | 285 |
| AclWI | GGATC | 1 cut(s) | 236 |
| AcoI | YGGCCR | 1 cut(s) | 172 |
| AgsI | TTSAA | 3 cut(s) | 161, 197, 419 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 1 cut(s) | 77 |
| AluI | AGCT | 1 cut(s) | 77 |
| AlwI | GGATC | 1 cut(s) | 236 |
| AoxI | GGCC | 1 cut(s) | 172 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| AsuC2I | CCSGG | 2 cut(s) | 38, 388 |
| AsuHPI | GGTGA | 2 cut(s) | 224, 343 |
| BbsI | GAAGAC | 2 cut(s) | 39, 142 |
| BbvI | GCAGC | 1 cut(s) | 86 |
| BcnI | CCSGG | 2 cut(s) | 38, 388 |
| BfaI | CTAG | 4 cut(s) | 132, 239, 257, 303 |
| BisI | GCNGC | 1 cut(s) | 75 |
| BlsI | GCNGC | 1 cut(s) | 76 |
| Bme1390I | CCNGG | 2 cut(s) | 38, 388 |
| BmrFI | CCNGG | 2 cut(s) | 38, 388 |
| BmsI | GCATC | 1 cut(s) | 400 |
| BpiI | GAAGAC | 2 cut(s) | 39, 142 |
| BpuMI | CCSGG | 2 cut(s) | 38, 388 |
| BsaAI | YACGTR | 1 cut(s) | 22 |
| Bse3DI | GCAATG | 1 cut(s) | 143 |
| BseGI | GGATG | 1 cut(s) | 410 |
| BseMI | GCAATG | 1 cut(s) | 143 |
| BseXI | GCAGC | 1 cut(s) | 86 |
| BshFI | GGCC | 1 cut(s) | 174 |
| BsiSI | CCGG | 2 cut(s) | 37, 388 |
| BsnI | GGCC | 1 cut(s) | 174 |
| Bsp143I | GATC | 2 cut(s) | 241, 295 |
| BspACI | CCGC | 1 cut(s) | 285 |
| BspANI | GGCC | 1 cut(s) | 174 |
| BspPI | GGATC | 1 cut(s) | 236 |
| BsrDI | GCAATG | 1 cut(s) | 143 |
| BssMI | GATC | 2 cut(s) | 241, 295 |
| BssNAI | GTATAC | 1 cut(s) | 19 |
| Bst1107I | GTATAC | 1 cut(s) | 19 |
| Bst4CI | ACNGT | 1 cut(s) | 325 |
| Bst6I | CTCTTC | 2 cut(s) | 191, 353 |
| BstBAI | YACGTR | 1 cut(s) | 22 |
| BstC8I | GCNNGC | 1 cut(s) | 425 |
| BstF5I | GGATG | 1 cut(s) | 410 |
| BstKTI | GATC | 2 cut(s) | 244, 298 |
| BstMBI | GATC | 2 cut(s) | 241, 295 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 388 |
| BstSCI | CCNGG | 2 cut(s) | 36, 386 |
| BstSNI | TACGTA | 1 cut(s) | 22 |
| BstV1I | GCAGC | 1 cut(s) | 86 |
| BstV2I | GAAGAC | 2 cut(s) | 39, 142 |
| BstX2I | RGATCY | 1 cut(s) | 241 |
| BstYI | RGATCY | 1 cut(s) | 241 |
| BstZ17I | GTATAC | 1 cut(s) | 19 |
| BsuRI | GGCC | 1 cut(s) | 174 |
| BtsCI | GGATG | 1 cut(s) | 410 |
| BtsIMutI | CAGTG | 2 cut(s) | 330, 354 |
| Cac8I | GCNNGC | 1 cut(s) | 425 |
| CviAII | CATG | 2 cut(s) | 209, 431 |
| CviJI | RGCY | 3 cut(s) | 50, 77, 174 |
| CviKI_1 | RGCY | 3 cut(s) | 50, 77, 174 |
| DpnI | GATC | 2 cut(s) | 243, 297 |
| DpnII | GATC | 2 cut(s) | 241, 295 |
| EaeI | YGGCCR | 1 cut(s) | 172 |
| Eam1104I | CTCTTC | 2 cut(s) | 191, 353 |
| EarI | CTCTTC | 2 cut(s) | 191, 353 |
| Eco105I | TACGTA | 1 cut(s) | 22 |
| FaeI | CATG | 2 cut(s) | 212, 434 |
| FaiI | YATR | 4 cut(s) | 19, 53, 210, 432 |
| FatI | CATG | 2 cut(s) | 208, 430 |
| FblI | GTMKAC | 1 cut(s) | 18 |
| Fnu4HI | GCNGC | 1 cut(s) | 75 |
| FokI | GGATG | 1 cut(s) | 397 |
| Fsp4HI | GCNGC | 1 cut(s) | 75 |
| FspBI | CTAG | 4 cut(s) | 132, 239, 257, 303 |
| GluI | GCNGC | 1 cut(s) | 75 |
| HaeIII | GGCC | 1 cut(s) | 174 |
| HapII | CCGG | 2 cut(s) | 37, 388 |
| Hin1II | CATG | 2 cut(s) | 212, 434 |
| HinfI | GANTC | 1 cut(s) | 193 |
| HpaII | CCGG | 2 cut(s) | 37, 388 |
| HphI | GGTGA | 2 cut(s) | 224, 343 |
| Hpy166II | GTNNAC | 2 cut(s) | 19, 215 |
| Hpy188I | TCNGA | 1 cut(s) | 268 |
| Hpy188III | TCNNGA | 3 cut(s) | 104, 190, 239 |
| Hpy8I | GTNNAC | 2 cut(s) | 19, 215 |
| HpyAV | CCTTC | 1 cut(s) | 425 |
| HpyCH4III | ACNGT | 1 cut(s) | 325 |
| HpyCH4IV | ACGT | 1 cut(s) | 21 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 388 |
| HpySE526I | ACGT | 1 cut(s) | 21 |
| Hsp92II | CATG | 2 cut(s) | 212, 434 |
| Kzo9I | GATC | 2 cut(s) | 241, 295 |
| LpnPI | CCDG | 5 cut(s) | 50, 112, 117, 306, 401 |
| Lsp1109I | GCAGC | 1 cut(s) | 86 |
| LweI | GCATC | 1 cut(s) | 400 |
| MaeI | CTAG | 4 cut(s) | 132, 239, 257, 303 |
| MaeII | ACGT | 1 cut(s) | 21 |
| MaeIII | GTNAC | 2 cut(s) | 8, 22 |
| MalI | GATC | 2 cut(s) | 243, 297 |
| MboI | GATC | 2 cut(s) | 241, 295 |
| MboII | GAAGA | 4 cut(s) | 44, 147, 178, 340 |
| MflI | RGATCY | 1 cut(s) | 241 |
| MluCI | AATT | 1 cut(s) | 107 |
| MnlI | CCTC | 1 cut(s) | 194 |
| MspA1I | CMGCKG | 1 cut(s) | 77 |
| MspI | CCGG | 2 cut(s) | 37, 388 |
| MspR9I | CCNGG | 2 cut(s) | 38, 388 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 388 |
| NciI | CCSGG | 2 cut(s) | 38, 388 |
| NdeII | GATC | 2 cut(s) | 241, 295 |
| NlaIII | CATG | 2 cut(s) | 212, 434 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 27 |
| PfeI | GAWTC | 1 cut(s) | 193 |
| PkrI | GCNGC | 1 cut(s) | 76 |
| Ppu21I | YACGTR | 1 cut(s) | 22 |
| PsuI | RGATCY | 1 cut(s) | 241 |
| PvuII | CAGCTG | 1 cut(s) | 77 |
| SatI | GCNGC | 1 cut(s) | 75 |
| Sau3AI | GATC | 2 cut(s) | 241, 295 |
| ScrFI | CCNGG | 2 cut(s) | 38, 388 |
| SetI | ASST | 5 cut(s) | 24, 79, 101, 133, 186 |
| SfaNI | GCATC | 1 cut(s) | 400 |
| SnaBI | TACGTA | 1 cut(s) | 22 |
| Sse9I | AATT | 1 cut(s) | 107 |
| SsiI | CCGC | 1 cut(s) | 285 |
| SspMI | CTAG | 4 cut(s) | 132, 239, 257, 303 |
| StyD4I | CCNGG | 2 cut(s) | 36, 386 |
| TaaI | ACNGT | 1 cut(s) | 325 |
| TaiI | ACGT | 1 cut(s) | 24 |
| TaqI | TCGA | 2 cut(s) | 30, 189 |
| TasI | AATT | 1 cut(s) | 107 |
| TfiI | GAWTC | 1 cut(s) | 193 |
| TscAI | CASTG | 2 cut(s) | 330, 361 |
| TseI | GCWGC | 1 cut(s) | 74 |
| TspDTI | ATGAA | 2 cut(s) | 60, 447 |
| TspRI | CASTG | 2 cut(s) | 330, 361 |
| XbaI | TCTAGA | 1 cut(s) | 238 |
| XmiI | GTMKAC | 1 cut(s) | 18 |
| XspI | CTAG | 4 cut(s) | 132, 239, 257, 303 |