DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 387 |
| AccII | CGCG | 1 cut(s) | 49 |
| AciI | CCGC | 3 cut(s) | 47, 49, 308 |
| AclWI | GGATC | 2 cut(s) | 532, 744 |
| AcoI | YGGCCR | 2 cut(s) | 50, 517 |
| AcsI | RAATTY | 2 cut(s) | 173, 311 |
| AfaI | GTAC | 1 cut(s) | 336 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 243 |
| AgsI | TTSAA | 3 cut(s) | 100, 173, 674 |
| AjnI | CCWGG | 1 cut(s) | 583 |
| AluBI | AGCT | 2 cut(s) | 273, 833 |
| AluI | AGCT | 2 cut(s) | 273, 833 |
| Alw21I | GWGCWC | 2 cut(s) | 193, 288 |
| Alw26I | GTCTC | 1 cut(s) | 696 |
| AlwI | GGATC | 2 cut(s) | 532, 744 |
| AoxI | GGCC | 2 cut(s) | 50, 517 |
| ApoI | RAATTY | 2 cut(s) | 173, 311 |
| AseI | ATTAAT | 1 cut(s) | 363 |
| AspLEI | GCGC | 1 cut(s) | 645 |
| AsuHPI | GGTGA | 1 cut(s) | 569 |
| BalI | TGGCCA | 1 cut(s) | 519 |
| BbsI | GAAGAC | 2 cut(s) | 206, 306 |
| Bbv12I | GWGCWC | 2 cut(s) | 193, 288 |
| BccI | CCATC | 3 cut(s) | 403, 759, 859 |
| BciT130I | CCWGG | 1 cut(s) | 585 |
| BciVI | GTATCC | 1 cut(s) | 124 |
| BcoDI | GTCTC | 1 cut(s) | 696 |
| BfmI | CTRYAG | 1 cut(s) | 216 |
| BfoI | RGCGCY | 1 cut(s) | 646 |
| BfuI | GTATCC | 1 cut(s) | 124 |
| BisI | GCNGC | 1 cut(s) | 50 |
| BlsI | GCNGC | 1 cut(s) | 51 |
| Bme1390I | CCNGG | 1 cut(s) | 585 |
| BmiI | GGNNCC | 1 cut(s) | 248 |
| BmrFI | CCNGG | 1 cut(s) | 585 |
| BmsI | GCATC | 2 cut(s) | 447, 611 |
| BpiI | GAAGAC | 2 cut(s) | 206, 306 |
| BpmI | CTGGAG | 1 cut(s) | 300 |
| BsaBI | GATNNNNATC | 1 cut(s) | 542 |
| BsaI | GGTCTC | 1 cut(s) | 696 |
| BsaJI | CCNNGG | 2 cut(s) | 47, 583 |
| BsaWI | WCCGGW | 1 cut(s) | 243 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 180, 210 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 243 |
| Bse118I | RCCGGY | 1 cut(s) | 52 |
| Bse1I | ACTGG | 1 cut(s) | 567 |
| Bse8I | GATNNNNATC | 1 cut(s) | 542 |
| BseBI | CCWGG | 1 cut(s) | 585 |
| BseDI | CCNNGG | 2 cut(s) | 47, 583 |
| BseGI | GGATG | 1 cut(s) | 650 |
| BseJI | GATNNNNATC | 1 cut(s) | 542 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 243 |
| BseMII | CTCAG | 1 cut(s) | 218 |
| BseNI | ACTGG | 1 cut(s) | 567 |
| BseX3I | CGGCCG | 1 cut(s) | 50 |
| BseYI | CCCAGC | 1 cut(s) | 250 |
| Bsh1236I | CGCG | 1 cut(s) | 49 |
| Bsh1285I | CGRYCG | 1 cut(s) | 53 |
| BshFI | GGCC | 2 cut(s) | 52, 519 |
| BsiEI | CGRYCG | 1 cut(s) | 53 |
| BsiHKAI | GWGCWC | 2 cut(s) | 193, 288 |
| BsiSI | CCGG | 2 cut(s) | 53, 244 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 243 |
| BsmAI | GTCTC | 1 cut(s) | 696 |
| BsnI | GGCC | 2 cut(s) | 52, 519 |
| Bso31I | GGTCTC | 1 cut(s) | 696 |
| Bsp1286I | GDGCHC | 2 cut(s) | 193, 288 |
| Bsp1407I | TGTACA | 1 cut(s) | 334 |
| Bsp143I | GATC | 4 cut(s) | 178, 379, 537, 736 |
| BspACI | CCGC | 3 cut(s) | 47, 49, 308 |
| BspANI | GGCC | 2 cut(s) | 52, 519 |
| BspCNI | CTCAG | 1 cut(s) | 217 |
| BspFNI | CGCG | 1 cut(s) | 49 |
| BspLI | GGNNCC | 1 cut(s) | 248 |
| BspPI | GGATC | 2 cut(s) | 532, 744 |
| BspTNI | GGTCTC | 1 cut(s) | 696 |
| BsrFI | RCCGGY | 1 cut(s) | 52 |
| BsrGI | TGTACA | 1 cut(s) | 334 |
| BsrI | ACTGG | 1 cut(s) | 567 |
| BssAI | RCCGGY | 1 cut(s) | 52 |
| BssECI | CCNNGG | 2 cut(s) | 47, 583 |
| BssMI | GATC | 4 cut(s) | 178, 379, 537, 736 |
| Bst2UI | CCWGG | 1 cut(s) | 585 |
| Bst4CI | ACNGT | 5 cut(s) | 153, 305, 400, 429, 744 |
| BstAUI | TGTACA | 1 cut(s) | 334 |
| BstC8I | GCNNGC | 1 cut(s) | 774 |
| BstDEI | CTNAG | 2 cut(s) | 204, 788 |
| BstDSI | CCRYGG | 1 cut(s) | 47 |
| BstF5I | GGATG | 1 cut(s) | 650 |
| BstFNI | CGCG | 1 cut(s) | 49 |
| BstH2I | RGCGCY | 1 cut(s) | 646 |
| BstHHI | GCGC | 1 cut(s) | 645 |
| BstKTI | GATC | 4 cut(s) | 181, 382, 540, 739 |
| BstMAI | GTCTC | 1 cut(s) | 696 |
| BstMBI | GATC | 4 cut(s) | 178, 379, 537, 736 |
| BstMCI | CGRYCG | 1 cut(s) | 53 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 270 |
| BstNI | CCWGG | 1 cut(s) | 585 |
| BstSCI | CCNGG | 1 cut(s) | 583 |
| BstSFI | CTRYAG | 1 cut(s) | 216 |
| BstUI | CGCG | 1 cut(s) | 49 |
| BstV2I | GAAGAC | 2 cut(s) | 206, 306 |
| BstX2I | RGATCY | 1 cut(s) | 537 |
| BstYI | RGATCY | 1 cut(s) | 537 |
| BstZI | CGGCCG | 1 cut(s) | 50 |
| BsuI | GTATCC | 1 cut(s) | 124 |
| BsuRI | GGCC | 2 cut(s) | 52, 519 |
| BtgI | CCRYGG | 1 cut(s) | 47 |
| BtsCI | GGATG | 1 cut(s) | 650 |
| BtsI | GCAGTG | 2 cut(s) | 228, 627 |
| BtsIMutI | CAGTG | 5 cut(s) | 228, 310, 612, 627, 749 |
| Cac8I | GCNNGC | 1 cut(s) | 774 |
| CfoI | GCGC | 1 cut(s) | 645 |
| Cfr10I | RCCGGY | 1 cut(s) | 52 |
| Cfr42I | CCGCGG | 1 cut(s) | 50 |
| Csp6I | GTAC | 1 cut(s) | 335 |
| CviAII | CATG | 3 cut(s) | 164, 351, 554 |
| CviJI | RGCY | 9 cut(s) | 52, 264, 273, 395, 519, 717, 802, 833, 839 |
| CviKI_1 | RGCY | 9 cut(s) | 52, 264, 273, 395, 519, 717, 802, 833, 839 |
| CviQI | GTAC | 1 cut(s) | 335 |
| DdeI | CTNAG | 2 cut(s) | 204, 788 |
| DpnI | GATC | 4 cut(s) | 180, 381, 539, 738 |
| DpnII | GATC | 4 cut(s) | 178, 379, 537, 736 |
| EaeI | YGGCCR | 2 cut(s) | 50, 517 |
| EagI | CGGCCG | 1 cut(s) | 50 |
| EclXI | CGGCCG | 1 cut(s) | 50 |
| Eco31I | GGTCTC | 1 cut(s) | 696 |
| Eco52I | CGGCCG | 1 cut(s) | 50 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 583 |
| FaeI | CATG | 3 cut(s) | 167, 354, 557 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 119, 151 |
| FatI | CATG | 3 cut(s) | 163, 350, 553 |
| Fnu4HI | GCNGC | 1 cut(s) | 50 |
| FokI | GGATG | 1 cut(s) | 637 |
| Fsp4HI | GCNGC | 1 cut(s) | 50 |
| GlaI | GCGC | 1 cut(s) | 644 |
| GluI | GCNGC | 1 cut(s) | 50 |
| GsaI | CCCAGC | 1 cut(s) | 254 |
| GsuI | CTGGAG | 1 cut(s) | 300 |
| HaeII | RGCGCY | 1 cut(s) | 646 |
| HaeIII | GGCC | 2 cut(s) | 52, 519 |
| HapII | CCGG | 2 cut(s) | 53, 244 |
| HhaI | GCGC | 1 cut(s) | 645 |
| Hin1II | CATG | 3 cut(s) | 167, 354, 557 |
| Hin6I | GCGC | 1 cut(s) | 643 |
| HinP1I | GCGC | 1 cut(s) | 643 |
| HincII | GTYRAC | 1 cut(s) | 758 |
| HindII | GTYRAC | 1 cut(s) | 758 |
| HinfI | GANTC | 3 cut(s) | 104, 202, 815 |
| HpaII | CCGG | 2 cut(s) | 53, 244 |
| HphI | GGTGA | 1 cut(s) | 569 |
| Hpy166II | GTNNAC | 2 cut(s) | 560, 758 |
| Hpy188I | TCNGA | 3 cut(s) | 188, 408, 701 |
| Hpy188III | TCNNGA | 4 cut(s) | 170, 206, 279, 377 |
| Hpy8I | GTNNAC | 2 cut(s) | 560, 758 |
| HpyAV | CCTTC | 1 cut(s) | 145 |
| HpyCH4III | ACNGT | 5 cut(s) | 153, 305, 400, 429, 744 |
| HpyCH4V | TGCA | 3 cut(s) | 228, 602, 632 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 270 |
| HpyF3I | CTNAG | 2 cut(s) | 204, 788 |
| Hsp92II | CATG | 3 cut(s) | 167, 354, 557 |
| HspAI | GCGC | 1 cut(s) | 643 |
| KspI | CCGCGG | 1 cut(s) | 50 |
| Kzo9I | GATC | 4 cut(s) | 178, 379, 537, 736 |
| LmnI | GCTCC | 1 cut(s) | 188 |
| LweI | GCATC | 2 cut(s) | 447, 611 |
| MaeIII | GTNAC | 4 cut(s) | 353, 367, 400, 746 |
| MalI | GATC | 4 cut(s) | 180, 381, 539, 738 |
| MboI | GATC | 4 cut(s) | 178, 379, 537, 736 |
| MboII | GAAGA | 3 cut(s) | 211, 311, 839 |
| MflI | RGATCY | 1 cut(s) | 537 |
| MhlI | GDGCHC | 2 cut(s) | 193, 288 |
| MlsI | TGGCCA | 1 cut(s) | 519 |
| MluCI | AATT | 3 cut(s) | 173, 311, 372 |
| MluNI | TGGCCA | 1 cut(s) | 519 |
| MlyI | GAGTC | 1 cut(s) | 196 |
| MmeI | TCCRAC | 1 cut(s) | 500 |
| MnlI | CCTC | 3 cut(s) | 76, 354, 442 |
| Mox20I | TGGCCA | 1 cut(s) | 519 |
| MscI | TGGCCA | 1 cut(s) | 519 |
| MseI | TTAA | 3 cut(s) | 60, 363, 504 |
| MslI | CAYNNNNRTG | 3 cut(s) | 365, 407, 859 |
| Msp20I | TGGCCA | 1 cut(s) | 519 |
| MspA1I | CMGCKG | 1 cut(s) | 49 |
| MspI | CCGG | 2 cut(s) | 53, 244 |
| MspR9I | CCNGG | 1 cut(s) | 585 |
| MvaI | CCWGG | 1 cut(s) | 585 |
| MvnI | CGCG | 1 cut(s) | 49 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 270 |
| NdeII | GATC | 4 cut(s) | 178, 379, 537, 736 |
| NlaIII | CATG | 3 cut(s) | 167, 354, 557 |
| NlaIV | GGNNCC | 1 cut(s) | 248 |
| NmuCI | GTSAC | 2 cut(s) | 367, 400 |
| PfeI | GAWTC | 2 cut(s) | 104, 815 |
| PkrI | GCNGC | 1 cut(s) | 51 |
| PleI | GAGTC | 1 cut(s) | 196 |
| PpsI | GAGTC | 1 cut(s) | 196 |
| PshBI | ATTAAT | 1 cut(s) | 363 |
| PsiI | TTATAA | 1 cut(s) | 387 |
| Psp6I | CCWGG | 1 cut(s) | 583 |
| PspFI | CCCAGC | 1 cut(s) | 250 |
| PspGI | CCWGG | 1 cut(s) | 583 |
| PspN4I | GGNNCC | 1 cut(s) | 248 |
| PsuI | RGATCY | 1 cut(s) | 537 |
| RsaI | GTAC | 1 cut(s) | 336 |
| RsaNI | GTAC | 1 cut(s) | 335 |
| RseI | CAYNNNNRTG | 3 cut(s) | 365, 407, 859 |
| SacII | CCGCGG | 1 cut(s) | 50 |
| SaqAI | TTAA | 3 cut(s) | 60, 363, 504 |
| SatI | GCNGC | 1 cut(s) | 50 |
| Sau3AI | GATC | 4 cut(s) | 178, 379, 537, 736 |
| SchI | GAGTC | 1 cut(s) | 196 |
| ScrFI | CCNGG | 1 cut(s) | 585 |
| SduI | GDGCHC | 2 cut(s) | 193, 288 |
| SetI | ASST | 7 cut(s) | 123, 137, 275, 527, 589, 835, 861 |
| SfaNI | GCATC | 2 cut(s) | 447, 611 |
| SfcI | CTRYAG | 1 cut(s) | 216 |
| Sfr303I | CCGCGG | 1 cut(s) | 50 |
| SgrBI | CCGCGG | 1 cut(s) | 50 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 365, 407, 859 |
| Sse9I | AATT | 3 cut(s) | 173, 311, 372 |
| SsiI | CCGC | 3 cut(s) | 47, 49, 308 |
| StyD4I | CCNGG | 1 cut(s) | 583 |
| TaaI | ACNGT | 5 cut(s) | 153, 305, 400, 429, 744 |
| TaqI | TCGA | 2 cut(s) | 177, 269 |
| TaqII | GACCGA | 1 cut(s) | 720 |
| TasI | AATT | 3 cut(s) | 173, 311, 372 |
| TatI | WGTACW | 1 cut(s) | 334 |
| TauI | GCSGC | 1 cut(s) | 52 |
| TfiI | GAWTC | 2 cut(s) | 104, 815 |
| Tru1I | TTAA | 3 cut(s) | 60, 363, 504 |
| Tru9I | TTAA | 3 cut(s) | 60, 363, 504 |
| TscAI | CASTG | 5 cut(s) | 235, 310, 612, 634, 749 |
| TseFI | GTSAC | 2 cut(s) | 367, 400 |
| Tsp45I | GTSAC | 2 cut(s) | 367, 400 |
| TspDTI | ATGAA | 5 cut(s) | 117, 152, 639, 685, 828 |
| TspGWI | ACGGA | 1 cut(s) | 83 |
| TspRI | CASTG | 5 cut(s) | 235, 310, 612, 634, 749 |
| VspI | ATTAAT | 1 cut(s) | 363 |
| XapI | RAATTY | 2 cut(s) | 173, 311 |