DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 77 |
| AccBSI | CCGCTC | 1 cut(s) | 634 |
| AccI | GTMKAC | 1 cut(s) | 60 |
| AccII | CGCG | 4 cut(s) | 240, 639, 755, 757 |
| AciI | CCGC | 2 cut(s) | 634, 757 |
| AclWI | GGATC | 2 cut(s) | 367, 574 |
| AcoI | YGGCCR | 1 cut(s) | 855 |
| AcuI | CTGAAG | 2 cut(s) | 103, 369 |
| AdeI | CACNNNGTG | 1 cut(s) | 685 |
| AfaI | GTAC | 1 cut(s) | 491 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 231, 350, 589, 697 |
| AflII | CTTAAG | 1 cut(s) | 413 |
| AgsI | TTSAA | 5 cut(s) | 31, 274, 314, 620, 904 |
| AjiI | CACGTC | 1 cut(s) | 73 |
| AjnI | CCWGG | 3 cut(s) | 343, 355, 582 |
| Alw21I | GWGCWC | 1 cut(s) | 767 |
| Alw26I | GTCTC | 3 cut(s) | 89, 467, 554 |
| AlwI | GGATC | 2 cut(s) | 367, 574 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 730 |
| AoxI | GGCC | 6 cut(s) | 417, 439, 447, 513, 592, 855 |
| ApeKI | GCWGC | 8 cut(s) | 78, 175, 676, 701, 724, 727, 790, 822 |
| AseI | ATTAAT | 1 cut(s) | 393 |
| AspLEI | GCGC | 5 cut(s) | 78, 242, 336, 639, 757 |
| AspS9I | GGNCC | 5 cut(s) | 43, 353, 439, 447, 592 |
| AsuHPI | GGTGA | 2 cut(s) | 518, 569 |
| AsuII | TTCGAA | 1 cut(s) | 17 |
| AvaII | GGWCC | 2 cut(s) | 43, 353 |
| AxyI | CCTNAGG | 1 cut(s) | 443 |
| BalI | TGGCCA | 1 cut(s) | 857 |
| BanII | GRGCYC | 1 cut(s) | 767 |
| Bbv12I | GWGCWC | 1 cut(s) | 767 |
| BbvI | GCAGC | 8 cut(s) | 90, 187, 663, 688, 736, 739, 802, 834 |
| BccI | CCATC | 3 cut(s) | 104, 241, 418 |
| BceAI | ACGGC | 1 cut(s) | 579 |
| BciT130I | CCWGG | 3 cut(s) | 345, 357, 584 |
| BclI | TGATCA | 1 cut(s) | 328 |
| BcoDI | GTCTC | 3 cut(s) | 89, 467, 554 |
| BfaI | CTAG | 4 cut(s) | 179, 378, 546, 692 |
| BfrI | CTTAAG | 1 cut(s) | 413 |
| BisI | GCNGC | 9 cut(s) | 79, 176, 635, 677, 702, 725, 728, 791, 823 |
| BlsI | GCNGC | 9 cut(s) | 80, 177, 636, 678, 703, 726, 729, 792, 824 |
| Bme1390I | CCNGG | 3 cut(s) | 345, 357, 584 |
| Bme18I | GGWCC | 2 cut(s) | 43, 353 |
| BmgBI | CACGTC | 1 cut(s) | 73 |
| BmgT120I | GGNCC | 5 cut(s) | 43, 353, 439, 447, 592 |
| BmrFI | CCNGG | 3 cut(s) | 345, 357, 584 |
| BmsI | GCATC | 5 cut(s) | 61, 73, 205, 631, 703 |
| Bpu10I | CCTNAGC | 1 cut(s) | 804 |
| Bpu14I | TTCGAA | 1 cut(s) | 17 |
| BpuEI | CTTGAG | 2 cut(s) | 68, 815 |
| BsaJI | CCNNGG | 3 cut(s) | 344, 595, 718 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 771, 801 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 231, 350, 589, 697 |
| Bse21I | CCTNAGG | 1 cut(s) | 443 |
| BseBI | CCWGG | 3 cut(s) | 345, 357, 584 |
| BseDI | CCNNGG | 3 cut(s) | 344, 595, 718 |
| BseGI | GGATG | 4 cut(s) | 97, 148, 252, 433 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 231, 350, 589, 697 |
| BseMII | CTCAG | 1 cut(s) | 267 |
| BseXI | GCAGC | 8 cut(s) | 90, 187, 663, 688, 736, 739, 802, 834 |
| BsgI | GTGCAG | 2 cut(s) | 662, 809 |
| Bsh1236I | CGCG | 4 cut(s) | 240, 639, 755, 757 |
| BshFI | GGCC | 6 cut(s) | 419, 441, 449, 515, 594, 857 |
| BsiHKAI | GWGCWC | 1 cut(s) | 767 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 231, 350, 589, 697 |
| BsmAI | GTCTC | 3 cut(s) | 89, 467, 554 |
| BsnI | GGCC | 6 cut(s) | 419, 441, 449, 515, 594, 857 |
| Bsp119I | TTCGAA | 1 cut(s) | 17 |
| Bsp1286I | GDGCHC | 1 cut(s) | 767 |
| Bsp143I | GATC | 5 cut(s) | 7, 328, 359, 370, 579 |
| BspACI | CCGC | 2 cut(s) | 634, 757 |
| BspANI | GGCC | 6 cut(s) | 419, 441, 449, 515, 594, 857 |
| BspCNI | CTCAG | 1 cut(s) | 266 |
| BspFNI | CGCG | 4 cut(s) | 240, 639, 755, 757 |
| BspPI | GGATC | 2 cut(s) | 367, 574 |
| BspQI | GCTCTTC | 1 cut(s) | 812 |
| BspT104I | TTCGAA | 1 cut(s) | 17 |
| BspTI | CTTAAG | 1 cut(s) | 413 |
| BsrBI | CCGCTC | 1 cut(s) | 634 |
| BssECI | CCNNGG | 3 cut(s) | 344, 595, 718 |
| BssMI | GATC | 5 cut(s) | 7, 328, 359, 370, 579 |
| BssT1I | CCWWGG | 1 cut(s) | 718 |
| Bst2UI | CCWGG | 3 cut(s) | 345, 357, 584 |
| Bst4CI | ACNGT | 3 cut(s) | 100, 478, 787 |
| Bst6I | CTCTTC | 1 cut(s) | 812 |
| BstAFI | CTTAAG | 1 cut(s) | 413 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 831 |
| BstBI | TTCGAA | 1 cut(s) | 17 |
| BstC8I | GCNNGC | 3 cut(s) | 759, 763, 801 |
| BstDEI | CTNAG | 3 cut(s) | 253, 443, 804 |
| BstDSI | CCRYGG | 1 cut(s) | 595 |
| BstF5I | GGATG | 4 cut(s) | 97, 148, 252, 433 |
| BstFNI | CGCG | 4 cut(s) | 240, 639, 755, 757 |
| BstHHI | GCGC | 5 cut(s) | 78, 242, 336, 639, 757 |
| BstKTI | GATC | 5 cut(s) | 10, 331, 362, 373, 582 |
| BstMAI | GTCTC | 3 cut(s) | 89, 467, 554 |
| BstMBI | GATC | 5 cut(s) | 7, 328, 359, 370, 579 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 172, 455, 796, 831 |
| BstNI | CCWGG | 3 cut(s) | 345, 357, 584 |
| BstSCI | CCNGG | 3 cut(s) | 343, 355, 582 |
| BstUI | CGCG | 4 cut(s) | 240, 639, 755, 757 |
| BstV1I | GCAGC | 8 cut(s) | 90, 187, 663, 688, 736, 739, 802, 834 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 865 |
| Bsu36I | CCTNAGG | 1 cut(s) | 443 |
| BsuRI | GGCC | 6 cut(s) | 419, 441, 449, 515, 594, 857 |
| BtgI | CCRYGG | 1 cut(s) | 595 |
| BtgZI | GCGATG | 2 cut(s) | 96, 654 |
| BtrI | CACGTC | 1 cut(s) | 73 |
| BtsCI | GGATG | 4 cut(s) | 97, 148, 252, 433 |
| Cac8I | GCNNGC | 3 cut(s) | 759, 763, 801 |
| CaiI | CAGNNNCTG | 1 cut(s) | 730 |
| CfoI | GCGC | 5 cut(s) | 78, 242, 336, 639, 757 |
| Cfr13I | GGNCC | 5 cut(s) | 43, 353, 439, 447, 592 |
| Csp6I | GTAC | 1 cut(s) | 490 |
| CviAII | CATG | 5 cut(s) | 148, 212, 226, 421, 697 |
| CviQI | GTAC | 1 cut(s) | 490 |
| DdeI | CTNAG | 3 cut(s) | 253, 443, 804 |
| DpnI | GATC | 5 cut(s) | 9, 330, 361, 372, 581 |
| DpnII | GATC | 5 cut(s) | 7, 328, 359, 370, 579 |
| DraIII | CACNNNGTG | 1 cut(s) | 685 |
| EaeI | YGGCCR | 1 cut(s) | 855 |
| Eam1104I | CTCTTC | 1 cut(s) | 812 |
| EarI | CTCTTC | 1 cut(s) | 812 |
| Ecl136II | GAGCTC | 1 cut(s) | 765 |
| Eco130I | CCWWGG | 1 cut(s) | 718 |
| Eco24I | GRGCYC | 1 cut(s) | 767 |
| Eco47I | GGWCC | 2 cut(s) | 43, 353 |
| Eco53kI | GAGCTC | 1 cut(s) | 765 |
| Eco57I | CTGAAG | 2 cut(s) | 103, 369 |
| Eco81I | CCTNAGG | 1 cut(s) | 443 |
| EcoICRI | GAGCTC | 1 cut(s) | 765 |
| EcoO109I | RGGNCCY | 2 cut(s) | 43, 439 |
| EcoRII | CCWGG | 3 cut(s) | 343, 355, 582 |
| EcoT14I | CCWWGG | 1 cut(s) | 718 |
| EcoT38I | GRGCYC | 1 cut(s) | 767 |
| ErhI | CCWWGG | 1 cut(s) | 718 |
| FaeI | CATG | 5 cut(s) | 151, 215, 229, 424, 700 |
| FaiI | YATR | 7 cut(s) | 149, 213, 227, 422, 698, 740, 848 |
| FatI | CATG | 5 cut(s) | 147, 211, 225, 420, 696 |
| FauI | CCCGC | 1 cut(s) | 750 |
| FbaI | TGATCA | 1 cut(s) | 328 |
| FblI | GTMKAC | 1 cut(s) | 60 |
| Fnu4HI | GCNGC | 9 cut(s) | 79, 176, 635, 677, 702, 725, 728, 791, 823 |
| FokI | GGATG | 4 cut(s) | 104, 155, 259, 440 |
| FriOI | GRGCYC | 1 cut(s) | 767 |
| Fsp4HI | GCNGC | 9 cut(s) | 79, 176, 635, 677, 702, 725, 728, 791, 823 |
| FspBI | CTAG | 4 cut(s) | 179, 378, 546, 692 |
| FspI | TGCGCA | 1 cut(s) | 77 |
| GlaI | GCGC | 5 cut(s) | 77, 241, 335, 638, 756 |
| GluI | GCNGC | 9 cut(s) | 79, 176, 635, 677, 702, 725, 728, 791, 823 |
| HaeIII | GGCC | 6 cut(s) | 419, 441, 449, 515, 594, 857 |
| HhaI | GCGC | 5 cut(s) | 78, 242, 336, 639, 757 |
| Hin1II | CATG | 5 cut(s) | 151, 215, 229, 424, 700 |
| Hin6I | GCGC | 5 cut(s) | 76, 240, 334, 637, 755 |
| HinP1I | GCGC | 5 cut(s) | 76, 240, 334, 637, 755 |
| HindIII | AAGCTT | 2 cut(s) | 164, 410 |
| HinfI | GANTC | 5 cut(s) | 114, 251, 305, 535, 895 |
| HphI | GGTGA | 2 cut(s) | 518, 569 |
| Hpy166II | GTNNAC | 2 cut(s) | 61, 353 |
| Hpy188I | TCNGA | 8 cut(s) | 256, 370, 463, 540, 573, 603, 816, 894 |
| Hpy188III | TCNNGA | 5 cut(s) | 107, 121, 271, 620, 904 |
| Hpy8I | GTNNAC | 2 cut(s) | 61, 353 |
| HpyAV | CCTTC | 4 cut(s) | 133, 477, 505, 643 |
| HpyCH4III | ACNGT | 3 cut(s) | 100, 478, 787 |
| HpyCH4IV | ACGT | 1 cut(s) | 72 |
| HpyCH4V | TGCA | 5 cut(s) | 679, 704, 790, 834, 840 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 172, 455, 796, 831 |
| HpyF3I | CTNAG | 3 cut(s) | 253, 443, 804 |
| HpySE526I | ACGT | 1 cut(s) | 72 |
| Hsp92II | CATG | 5 cut(s) | 151, 215, 229, 424, 700 |
| HspAI | GCGC | 5 cut(s) | 76, 240, 334, 637, 755 |
| Ksp22I | TGATCA | 1 cut(s) | 328 |
| Kzo9I | GATC | 5 cut(s) | 7, 328, 359, 370, 579 |
| LguI | GCTCTTC | 1 cut(s) | 812 |
| LmnI | GCTCC | 1 cut(s) | 152 |
| Lsp1109I | GCAGC | 8 cut(s) | 90, 187, 663, 688, 736, 739, 802, 834 |
| LweI | GCATC | 5 cut(s) | 61, 73, 205, 631, 703 |
| MaeI | CTAG | 4 cut(s) | 179, 378, 546, 692 |
| MaeII | ACGT | 1 cut(s) | 72 |
| MalI | GATC | 5 cut(s) | 9, 330, 361, 372, 581 |
| MbiI | CCGCTC | 1 cut(s) | 634 |
| MboI | GATC | 5 cut(s) | 7, 328, 359, 370, 579 |
| MboII | GAAGA | 4 cut(s) | 109, 357, 829, 869 |
| MhlI | GDGCHC | 1 cut(s) | 767 |
| MlsI | TGGCCA | 1 cut(s) | 857 |
| MluCI | AATT | 3 cut(s) | 22, 390, 615 |
| MluNI | TGGCCA | 1 cut(s) | 857 |
| MlyI | GAGTC | 1 cut(s) | 245 |
| MmeI | TCCRAC | 1 cut(s) | 460 |
| MnlI | CCTC | 8 cut(s) | 175, 187, 469, 480, 547, 567, 677, 773 |
| Mox20I | TGGCCA | 1 cut(s) | 857 |
| MscI | TGGCCA | 1 cut(s) | 857 |
| MseI | TTAA | 3 cut(s) | 393, 414, 910 |
| Msp20I | TGGCCA | 1 cut(s) | 857 |
| MspA1I | CMGCKG | 1 cut(s) | 730 |
| MspCI | CTTAAG | 1 cut(s) | 413 |
| MspR9I | CCNGG | 3 cut(s) | 345, 357, 584 |
| MvaI | CCWGG | 3 cut(s) | 345, 357, 584 |
| MvnI | CGCG | 4 cut(s) | 240, 639, 755, 757 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 172, 455, 796, 831 |
| NdeII | GATC | 5 cut(s) | 7, 328, 359, 370, 579 |
| NlaIII | CATG | 5 cut(s) | 151, 215, 229, 424, 700 |
| NsbI | TGCGCA | 1 cut(s) | 77 |
| NspV | TTCGAA | 1 cut(s) | 17 |
| PciSI | GCTCTTC | 1 cut(s) | 812 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 78 |
| PfeI | GAWTC | 4 cut(s) | 114, 305, 535, 895 |
| PfoI | TCCNGGA | 1 cut(s) | 582 |
| PkrI | GCNGC | 9 cut(s) | 80, 177, 636, 678, 703, 726, 729, 792, 824 |
| PleI | GAGTC | 1 cut(s) | 245 |
| PpsI | GAGTC | 1 cut(s) | 245 |
| PpuMI | RGGWCCY | 1 cut(s) | 43 |
| PshBI | ATTAAT | 1 cut(s) | 393 |
| Psp124BI | GAGCTC | 1 cut(s) | 767 |
| Psp5II | RGGWCCY | 1 cut(s) | 43 |
| Psp6I | CCWGG | 3 cut(s) | 343, 355, 582 |
| PspGI | CCWGG | 3 cut(s) | 343, 355, 582 |
| PspPI | GGNCC | 5 cut(s) | 43, 353, 439, 447, 592 |
| PspPPI | RGGWCCY | 1 cut(s) | 43 |
| PstNI | CAGNNNCTG | 1 cut(s) | 730 |
| PvuII | CAGCTG | 1 cut(s) | 730 |
| RsaI | GTAC | 1 cut(s) | 491 |
| RsaNI | GTAC | 1 cut(s) | 490 |
| SacI | GAGCTC | 1 cut(s) | 767 |
| SapI | GCTCTTC | 1 cut(s) | 812 |
| SaqAI | TTAA | 3 cut(s) | 393, 414, 910 |
| SatI | GCNGC | 9 cut(s) | 79, 176, 635, 677, 702, 725, 728, 791, 823 |
| Sau3AI | GATC | 5 cut(s) | 7, 328, 359, 370, 579 |
| Sau96I | GGNCC | 5 cut(s) | 43, 353, 439, 447, 592 |
| SchI | GAGTC | 1 cut(s) | 245 |
| ScrFI | CCNGG | 3 cut(s) | 345, 357, 584 |
| SduI | GDGCHC | 1 cut(s) | 767 |
| SfaNI | GCATC | 5 cut(s) | 61, 73, 205, 631, 703 |
| SfuI | TTCGAA | 1 cut(s) | 17 |
| SinI | GGWCC | 2 cut(s) | 43, 353 |
| SmlI | CTYRAG | 3 cut(s) | 47, 413, 794 |
| SmoI | CTYRAG | 3 cut(s) | 47, 413, 794 |
| Sse9I | AATT | 3 cut(s) | 22, 390, 615 |
| SsiI | CCGC | 2 cut(s) | 634, 757 |
| SspMI | CTAG | 4 cut(s) | 179, 378, 546, 692 |
| SstI | GAGCTC | 1 cut(s) | 767 |
| StyD4I | CCNGG | 3 cut(s) | 343, 355, 582 |
| StyI | CCWWGG | 1 cut(s) | 718 |
| TaaI | ACNGT | 3 cut(s) | 100, 478, 787 |
| TaiI | ACGT | 1 cut(s) | 75 |
| TaqI | TCGA | 2 cut(s) | 17, 373 |
| TasI | AATT | 3 cut(s) | 22, 390, 615 |
| TauI | GCSGC | 1 cut(s) | 637 |
| TfiI | GAWTC | 4 cut(s) | 114, 305, 535, 895 |
| Tru1I | TTAA | 3 cut(s) | 393, 414, 910 |
| Tru9I | TTAA | 3 cut(s) | 393, 414, 910 |
| TseI | GCWGC | 8 cut(s) | 78, 175, 676, 701, 724, 727, 790, 822 |
| TspDTI | ATGAA | 4 cut(s) | 15, 17, 242, 537 |
| TspGWI | ACGGA | 1 cut(s) | 259 |
| Vha464I | CTTAAG | 1 cut(s) | 413 |
| VpaK11BI | GGWCC | 2 cut(s) | 43, 353 |
| VspI | ATTAAT | 1 cut(s) | 393 |
| XmiI | GTMKAC | 1 cut(s) | 60 |
| XspI | CTAG | 4 cut(s) | 179, 378, 546, 692 |