DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 483 |
| AclWI | GGATC | 1 cut(s) | 188 |
| AcuI | CTGAAG | 2 cut(s) | 112, 225 |
| AgsI | TTSAA | 4 cut(s) | 365, 380, 405, 464 |
| AjiI | CACGTC | 1 cut(s) | 308 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AluBI | AGCT | 2 cut(s) | 152, 384 |
| AluI | AGCT | 2 cut(s) | 152, 384 |
| AlwI | GGATC | 1 cut(s) | 188 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 197 |
| AoxI | GGCC | 1 cut(s) | 107 |
| ApeKI | GCWGC | 3 cut(s) | 86, 149, 371 |
| AspS9I | GGNCC | 3 cut(s) | 16, 107, 495 |
| AsuHPI | GGTGA | 1 cut(s) | 34 |
| AvaII | GGWCC | 2 cut(s) | 16, 495 |
| BbsI | GAAGAC | 1 cut(s) | 310 |
| BbvI | GCAGC | 3 cut(s) | 98, 161, 383 |
| BccI | CCATC | 1 cut(s) | 223 |
| BceAI | ACGGC | 1 cut(s) | 300 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BfaI | CTAG | 2 cut(s) | 219, 278 |
| BfmI | CTRYAG | 2 cut(s) | 147, 444 |
| BfuAI | ACCTGC | 1 cut(s) | 483 |
| BisI | GCNGC | 3 cut(s) | 87, 150, 372 |
| BlsI | GCNGC | 3 cut(s) | 88, 151, 373 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| Bme18I | GGWCC | 2 cut(s) | 16, 495 |
| BmgBI | CACGTC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 3 cut(s) | 16, 107, 495 |
| BmiI | GGNNCC | 1 cut(s) | 108 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmsI | GCATC | 4 cut(s) | 192, 226, 461, 519 |
| BpiI | GAAGAC | 1 cut(s) | 310 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseGI | GGATG | 1 cut(s) | 238 |
| BseMII | CTCAG | 2 cut(s) | 189, 315 |
| BseXI | GCAGC | 3 cut(s) | 98, 161, 383 |
| BsgI | GTGCAG | 1 cut(s) | 390 |
| BshFI | GGCC | 1 cut(s) | 109 |
| BsnI | GGCC | 1 cut(s) | 109 |
| Bsp143I | GATC | 2 cut(s) | 193, 265 |
| BspANI | GGCC | 1 cut(s) | 109 |
| BspCNI | CTCAG | 2 cut(s) | 190, 316 |
| BspLI | GGNNCC | 1 cut(s) | 108 |
| BspMAI | CTGCAG | 2 cut(s) | 151, 448 |
| BspMI | ACCTGC | 1 cut(s) | 483 |
| BspPI | GGATC | 1 cut(s) | 188 |
| BssMI | GATC | 2 cut(s) | 193, 265 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 317, 489 |
| BstC8I | GCNNGC | 4 cut(s) | 45, 91, 313, 397 |
| BstDEI | CTNAG | 2 cut(s) | 198, 324 |
| BstF5I | GGATG | 1 cut(s) | 238 |
| BstKTI | GATC | 2 cut(s) | 196, 268 |
| BstMBI | GATC | 2 cut(s) | 193, 265 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 211, 278, 317, 489 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstNSI | RCATGY | 1 cut(s) | 399 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSFI | CTRYAG | 2 cut(s) | 147, 444 |
| BstV1I | GCAGC | 3 cut(s) | 98, 161, 383 |
| BstV2I | GAAGAC | 1 cut(s) | 310 |
| BstX2I | RGATCY | 1 cut(s) | 193 |
| BstYI | RGATCY | 1 cut(s) | 193 |
| BsuRI | GGCC | 1 cut(s) | 109 |
| BtrI | CACGTC | 1 cut(s) | 308 |
| BtsCI | GGATG | 1 cut(s) | 238 |
| BveI | ACCTGC | 1 cut(s) | 483 |
| Cac8I | GCNNGC | 4 cut(s) | 45, 91, 313, 397 |
| CaiI | CAGNNNCTG | 1 cut(s) | 197 |
| Cfr13I | GGNCC | 3 cut(s) | 16, 107, 495 |
| CviAII | CATG | 4 cut(s) | 40, 103, 251, 396 |
| CviJI | RGCY | 9 cut(s) | 36, 89, 109, 152, 214, 281, 315, 374, 384 |
| CviKI_1 | RGCY | 9 cut(s) | 36, 89, 109, 152, 214, 281, 315, 374, 384 |
| DdeI | CTNAG | 2 cut(s) | 198, 324 |
| DpnI | GATC | 2 cut(s) | 195, 267 |
| DpnII | GATC | 2 cut(s) | 193, 265 |
| Eco47I | GGWCC | 2 cut(s) | 16, 495 |
| Eco57I | CTGAAG | 2 cut(s) | 112, 225 |
| EcoO109I | RGGNCCY | 2 cut(s) | 107, 495 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| FaeI | CATG | 4 cut(s) | 43, 106, 254, 399 |
| FatI | CATG | 4 cut(s) | 39, 102, 250, 395 |
| Fnu4HI | GCNGC | 3 cut(s) | 87, 150, 372 |
| FokI | GGATG | 1 cut(s) | 245 |
| Fsp4HI | GCNGC | 3 cut(s) | 87, 150, 372 |
| FspBI | CTAG | 2 cut(s) | 219, 278 |
| GluI | GCNGC | 3 cut(s) | 87, 150, 372 |
| HaeIII | GGCC | 1 cut(s) | 109 |
| Hin1II | CATG | 4 cut(s) | 43, 106, 254, 399 |
| HincII | GTYRAC | 1 cut(s) | 330 |
| HindII | GTYRAC | 1 cut(s) | 330 |
| HinfI | GANTC | 2 cut(s) | 115, 347 |
| HphI | GGTGA | 1 cut(s) | 34 |
| Hpy166II | GTNNAC | 1 cut(s) | 330 |
| Hpy188I | TCNGA | 2 cut(s) | 131, 244 |
| Hpy188III | TCNNGA | 3 cut(s) | 197, 263, 338 |
| Hpy8I | GTNNAC | 1 cut(s) | 330 |
| HpyCH4IV | ACGT | 1 cut(s) | 307 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 211, 278, 317, 489 |
| HpyF3I | CTNAG | 2 cut(s) | 198, 324 |
| HpySE526I | ACGT | 1 cut(s) | 307 |
| Hsp92II | CATG | 4 cut(s) | 43, 106, 254, 399 |
| Kzo9I | GATC | 2 cut(s) | 193, 265 |
| LmnI | GCTCC | 2 cut(s) | 389, 449 |
| LpnPI | CCDG | 6 cut(s) | 5, 32, 103, 210, 432, 478 |
| Lsp1109I | GCAGC | 3 cut(s) | 98, 161, 383 |
| LweI | GCATC | 4 cut(s) | 192, 226, 461, 519 |
| MaeI | CTAG | 2 cut(s) | 219, 278 |
| MaeII | ACGT | 1 cut(s) | 307 |
| MaeIII | GTNAC | 1 cut(s) | 187 |
| MalI | GATC | 2 cut(s) | 195, 267 |
| MboI | GATC | 2 cut(s) | 193, 265 |
| MboII | GAAGA | 2 cut(s) | 118, 315 |
| MfeI | CAATTG | 1 cut(s) | 351 |
| MflI | RGATCY | 1 cut(s) | 193 |
| MluCI | AATT | 6 cut(s) | 121, 290, 351, 459, 505, 512 |
| MlyI | GAGTC | 1 cut(s) | 124 |
| MnlI | CCTC | 2 cut(s) | 70, 270 |
| MseI | TTAA | 3 cut(s) | 225, 293, 515 |
| MslI | CAYNNNNRTG | 3 cut(s) | 77, 339, 342 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MunI | CAATTG | 1 cut(s) | 351 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 211, 278, 317, 489 |
| NdeII | GATC | 2 cut(s) | 193, 265 |
| NlaIII | CATG | 4 cut(s) | 43, 106, 254, 399 |
| NlaIV | GGNNCC | 1 cut(s) | 108 |
| NspI | RCATGY | 1 cut(s) | 399 |
| PaeI | GCATGC | 1 cut(s) | 399 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 313 |
| PfeI | GAWTC | 1 cut(s) | 347 |
| PkrI | GCNGC | 3 cut(s) | 88, 151, 373 |
| PleI | GAGTC | 1 cut(s) | 123 |
| PpsI | GAGTC | 1 cut(s) | 123 |
| PpuMI | RGGWCCY | 1 cut(s) | 495 |
| Psp5II | RGGWCCY | 1 cut(s) | 495 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspN4I | GGNNCC | 1 cut(s) | 108 |
| PspPI | GGNCC | 3 cut(s) | 16, 107, 495 |
| PspPPI | RGGWCCY | 1 cut(s) | 495 |
| PstI | CTGCAG | 2 cut(s) | 151, 448 |
| PstNI | CAGNNNCTG | 1 cut(s) | 197 |
| PsuI | RGATCY | 1 cut(s) | 193 |
| RseI | CAYNNNNRTG | 3 cut(s) | 77, 339, 342 |
| SaqAI | TTAA | 3 cut(s) | 225, 293, 515 |
| SatI | GCNGC | 3 cut(s) | 87, 150, 372 |
| Sau3AI | GATC | 2 cut(s) | 193, 265 |
| Sau96I | GGNCC | 3 cut(s) | 16, 107, 495 |
| SchI | GAGTC | 1 cut(s) | 124 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SetI | ASST | 7 cut(s) | 32, 154, 262, 310, 386, 497, 523 |
| SfaNI | GCATC | 4 cut(s) | 192, 226, 461, 519 |
| SfcI | CTRYAG | 2 cut(s) | 147, 444 |
| SinI | GGWCC | 2 cut(s) | 16, 495 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 77, 339, 342 |
| SphI | GCATGC | 1 cut(s) | 399 |
| Sse9I | AATT | 6 cut(s) | 121, 290, 351, 459, 505, 512 |
| SspMI | CTAG | 2 cut(s) | 219, 278 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaiI | ACGT | 1 cut(s) | 310 |
| TasI | AATT | 6 cut(s) | 121, 290, 351, 459, 505, 512 |
| TfiI | GAWTC | 1 cut(s) | 347 |
| Tru1I | TTAA | 3 cut(s) | 225, 293, 515 |
| Tru9I | TTAA | 3 cut(s) | 225, 293, 515 |
| TseI | GCWGC | 3 cut(s) | 86, 149, 371 |
| TspDTI | ATGAA | 2 cut(s) | 28, 360 |
| VpaK11BI | GGWCC | 2 cut(s) | 16, 495 |
| XceI | RCATGY | 1 cut(s) | 399 |
| XspI | CTAG | 2 cut(s) | 219, 278 |