DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 11 - 97 | 2.1e-06 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 6 |
| AcsI | RAATTY | 1 cut(s) | 110 |
| AgsI | TTSAA | 2 cut(s) | 21, 336 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 216, 248 |
| AluBI | AGCT | 3 cut(s) | 72, 143, 243 |
| AluI | AGCT | 3 cut(s) | 72, 143, 243 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 243 |
| AoxI | GGCC | 1 cut(s) | 316 |
| ApeKI | GCWGC | 4 cut(s) | 12, 124, 237, 240 |
| ApoI | RAATTY | 1 cut(s) | 110 |
| BbsI | GAAGAC | 1 cut(s) | 220 |
| BbvI | GCAGC | 4 cut(s) | 24, 136, 249, 252 |
| BccI | CCATC | 2 cut(s) | 202, 348 |
| BfmI | CTRYAG | 1 cut(s) | 10 |
| BisI | GCNGC | 4 cut(s) | 13, 125, 238, 241 |
| BlsI | GCNGC | 4 cut(s) | 14, 126, 239, 242 |
| BmsI | GCATC | 1 cut(s) | 169 |
| BpiI | GAAGAC | 1 cut(s) | 220 |
| Bse3DI | GCAATG | 1 cut(s) | 112 |
| BseGI | GGATG | 1 cut(s) | 184 |
| BseMI | GCAATG | 1 cut(s) | 112 |
| BseXI | GCAGC | 4 cut(s) | 24, 136, 249, 252 |
| BsgI | GTGCAG | 1 cut(s) | 143 |
| BshFI | GGCC | 1 cut(s) | 318 |
| BsnI | GGCC | 1 cut(s) | 318 |
| Bsp143I | GATC | 1 cut(s) | 266 |
| BspANI | GGCC | 1 cut(s) | 318 |
| BspMAI | CTGCAG | 1 cut(s) | 14 |
| BspQI | GCTCTTC | 1 cut(s) | 150 |
| BsrDI | GCAATG | 1 cut(s) | 112 |
| BssMI | GATC | 1 cut(s) | 266 |
| Bst4CI | ACNGT | 1 cut(s) | 199 |
| Bst6I | CTCTTC | 2 cut(s) | 150, 291 |
| BstC8I | GCNNGC | 1 cut(s) | 64 |
| BstDEI | CTNAG | 1 cut(s) | 253 |
| BstF5I | GGATG | 1 cut(s) | 184 |
| BstKTI | GATC | 1 cut(s) | 269 |
| BstMBI | GATC | 1 cut(s) | 266 |
| BstNSI | RCATGY | 1 cut(s) | 66 |
| BstSFI | CTRYAG | 1 cut(s) | 10 |
| BstV1I | GCAGC | 4 cut(s) | 24, 136, 249, 252 |
| BstV2I | GAAGAC | 1 cut(s) | 220 |
| BsuRI | GGCC | 1 cut(s) | 318 |
| BtsCI | GGATG | 1 cut(s) | 184 |
| BtsI | GCAGTG | 1 cut(s) | 287 |
| BtsIMutI | CAGTG | 1 cut(s) | 287 |
| Cac8I | GCNNGC | 1 cut(s) | 64 |
| CaiI | CAGNNNCTG | 1 cut(s) | 243 |
| CviAII | CATG | 3 cut(s) | 63, 128, 150 |
| CviJI | RGCY | 6 cut(s) | 72, 85, 143, 243, 318, 328 |
| CviKI_1 | RGCY | 6 cut(s) | 72, 85, 143, 243, 318, 328 |
| DdeI | CTNAG | 1 cut(s) | 253 |
| DpnI | GATC | 1 cut(s) | 268 |
| DpnII | GATC | 1 cut(s) | 266 |
| Eam1104I | CTCTTC | 2 cut(s) | 150, 291 |
| EarI | CTCTTC | 2 cut(s) | 150, 291 |
| EcoRI | GAATTC | 1 cut(s) | 110 |
| FaeI | CATG | 3 cut(s) | 66, 131, 153 |
| FaiI | YATR | 9 cut(s) | 57, 64, 80, 129, 134, 151, 165, 203, 271 |
| FatI | CATG | 3 cut(s) | 62, 127, 149 |
| FblI | GTMKAC | 1 cut(s) | 6 |
| Fnu4HI | GCNGC | 4 cut(s) | 13, 125, 238, 241 |
| FokI | GGATG | 1 cut(s) | 191 |
| Fsp4HI | GCNGC | 4 cut(s) | 13, 125, 238, 241 |
| GluI | GCNGC | 4 cut(s) | 13, 125, 238, 241 |
| HaeIII | GGCC | 1 cut(s) | 318 |
| Hin1II | CATG | 3 cut(s) | 66, 131, 153 |
| HinfI | GANTC | 3 cut(s) | 30, 159, 347 |
| Hpy166II | GTNNAC | 2 cut(s) | 7, 259 |
| Hpy188III | TCNNGA | 2 cut(s) | 248, 351 |
| Hpy8I | GTNNAC | 2 cut(s) | 7, 259 |
| HpyCH4III | ACNGT | 1 cut(s) | 199 |
| HpyCH4V | TGCA | 2 cut(s) | 12, 124 |
| HpyF3I | CTNAG | 1 cut(s) | 253 |
| Hsp92II | CATG | 3 cut(s) | 66, 131, 153 |
| Kzo9I | GATC | 1 cut(s) | 266 |
| LguI | GCTCTTC | 1 cut(s) | 150 |
| LpnPI | CCDG | 3 cut(s) | 306, 332, 338 |
| Lsp1109I | GCAGC | 4 cut(s) | 24, 136, 249, 252 |
| LweI | GCATC | 1 cut(s) | 169 |
| MaeIII | GTNAC | 2 cut(s) | 74, 152 |
| MalI | GATC | 1 cut(s) | 268 |
| MboI | GATC | 1 cut(s) | 266 |
| MboII | GAAGA | 3 cut(s) | 137, 225, 308 |
| MluCI | AATT | 2 cut(s) | 110, 227 |
| MlyI | GAGTC | 1 cut(s) | 168 |
| MnlI | CCTC | 1 cut(s) | 169 |
| MslI | CAYNNNNRTG | 1 cut(s) | 119 |
| MspA1I | CMGCKG | 1 cut(s) | 243 |
| NdeII | GATC | 1 cut(s) | 266 |
| NlaIII | CATG | 3 cut(s) | 66, 131, 153 |
| NspI | RCATGY | 1 cut(s) | 66 |
| PaeI | GCATGC | 1 cut(s) | 66 |
| PciSI | GCTCTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 2 cut(s) | 30, 347 |
| PkrI | GCNGC | 4 cut(s) | 14, 126, 239, 242 |
| PleI | GAGTC | 1 cut(s) | 167 |
| PpsI | GAGTC | 1 cut(s) | 167 |
| PstI | CTGCAG | 1 cut(s) | 14 |
| PstNI | CAGNNNCTG | 1 cut(s) | 243 |
| PvuII | CAGCTG | 1 cut(s) | 243 |
| RseI | CAYNNNNRTG | 1 cut(s) | 119 |
| SapI | GCTCTTC | 1 cut(s) | 150 |
| SatI | GCNGC | 4 cut(s) | 13, 125, 238, 241 |
| Sau3AI | GATC | 1 cut(s) | 266 |
| SchI | GAGTC | 1 cut(s) | 168 |
| SetI | ASST | 3 cut(s) | 74, 145, 245 |
| SfaNI | GCATC | 1 cut(s) | 169 |
| SfcI | CTRYAG | 1 cut(s) | 10 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 119 |
| SphI | GCATGC | 1 cut(s) | 66 |
| Sse9I | AATT | 2 cut(s) | 110, 227 |
| TaaI | ACNGT | 1 cut(s) | 199 |
| TaqI | TCGA | 1 cut(s) | 352 |
| TasI | AATT | 2 cut(s) | 110, 227 |
| TfiI | GAWTC | 2 cut(s) | 30, 347 |
| TscAI | CASTG | 1 cut(s) | 294 |
| TseI | GCWGC | 4 cut(s) | 12, 124, 237, 240 |
| TspDTI | ATGAA | 2 cut(s) | 103, 123 |
| TspGWI | ACGGA | 1 cut(s) | 14 |
| TspRI | CASTG | 1 cut(s) | 294 |
| XapI | RAATTY | 1 cut(s) | 110 |
| XceI | RCATGY | 1 cut(s) | 66 |
| XmiI | GTMKAC | 1 cut(s) | 6 |