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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 117 |
| AclI | AACGTT | 1 cut(s) | 42 |
| AclWI | GGATC | 1 cut(s) | 608 |
| AcoI | YGGCCR | 1 cut(s) | 9 |
| AcsI | RAATTY | 3 cut(s) | 308, 368, 650 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 3 cut(s) | 408, 475, 690 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 117 |
| AgsI | TTSAA | 9 cut(s) | 19, 35, 47, 91, 164, 368, 650, 697, 721 |
| AjnI | CCWGG | 2 cut(s) | 26, 661 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 524, 556 |
| Alw21I | GWGCWC | 1 cut(s) | 388 |
| Alw26I | GTCTC | 1 cut(s) | 652 |
| AlwI | GGATC | 1 cut(s) | 608 |
| AoxI | GGCC | 3 cut(s) | 9, 81, 122 |
| ApeKI | GCWGC | 2 cut(s) | 426, 629 |
| ApoI | RAATTY | 3 cut(s) | 308, 368, 650 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 470, 502 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 42 |
| AspS9I | GGNCC | 1 cut(s) | 763 |
| AsuHPI | GGTGA | 1 cut(s) | 527 |
| AvaII | GGWCC | 1 cut(s) | 763 |
| BbsI | GAAGAC | 2 cut(s) | 79, 493 |
| Bbv12I | GWGCWC | 1 cut(s) | 388 |
| BbvI | GCAGC | 2 cut(s) | 413, 641 |
| BceAI | ACGGC | 2 cut(s) | 68, 260 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 592, 626 |
| BciT130I | CCWGG | 2 cut(s) | 28, 663 |
| BciVI | GTATCC | 2 cut(s) | 118, 319 |
| BclI | TGATCA | 2 cut(s) | 271, 606 |
| BcoDI | GTCTC | 1 cut(s) | 652 |
| BfuI | GTATCC | 2 cut(s) | 118, 319 |
| BisI | GCNGC | 2 cut(s) | 427, 630 |
| BlsI | GCNGC | 2 cut(s) | 428, 631 |
| BmcAI | AGTACT | 1 cut(s) | 408 |
| Bme1390I | CCNGG | 2 cut(s) | 28, 663 |
| Bme18I | GGWCC | 1 cut(s) | 763 |
| BmgT120I | GGNCC | 1 cut(s) | 763 |
| BmiI | GGNNCC | 1 cut(s) | 765 |
| BmrFI | CCNGG | 2 cut(s) | 28, 663 |
| BmsI | GCATC | 2 cut(s) | 133, 460 |
| BpiI | GAAGAC | 2 cut(s) | 79, 493 |
| BpmI | CTGGAG | 3 cut(s) | 10, 503, 587 |
| BpuEI | CTTGAG | 2 cut(s) | 384, 535 |
| Bsa29I | ATCGAT | 1 cut(s) | 612 |
| BsaAI | YACGTR | 1 cut(s) | 778 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 652 |
| BsaJI | CCNNGG | 1 cut(s) | 242 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 319, 349, 375, 405 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 117 |
| Bse1I | ACTGG | 2 cut(s) | 486, 765 |
| BseBI | CCWGG | 2 cut(s) | 28, 663 |
| BseCI | ATCGAT | 1 cut(s) | 612 |
| BseDI | CCNNGG | 1 cut(s) | 242 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 117 |
| BseNI | ACTGG | 2 cut(s) | 486, 765 |
| BseRI | GAGGAG | 2 cut(s) | 153, 532 |
| BseXI | GCAGC | 2 cut(s) | 413, 641 |
| BshFI | GGCC | 3 cut(s) | 11, 83, 124 |
| BshVI | ATCGAT | 1 cut(s) | 612 |
| BsiHKAI | GWGCWC | 1 cut(s) | 388 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 117 |
| BsmAI | GTCTC | 1 cut(s) | 652 |
| BsmI | GAATGC | 1 cut(s) | 349 |
| BsnI | GGCC | 3 cut(s) | 11, 83, 124 |
| Bso31I | GGTCTC | 1 cut(s) | 652 |
| Bsp1286I | GDGCHC | 1 cut(s) | 388 |
| Bsp143I | GATC | 5 cut(s) | 271, 373, 606, 613, 748 |
| BspANI | GGCC | 3 cut(s) | 11, 83, 124 |
| BspDI | ATCGAT | 1 cut(s) | 612 |
| BspLI | GGNNCC | 1 cut(s) | 765 |
| BspPI | GGATC | 1 cut(s) | 608 |
| BspTNI | GGTCTC | 1 cut(s) | 652 |
| BsrI | ACTGG | 2 cut(s) | 486, 765 |
| BssECI | CCNNGG | 1 cut(s) | 242 |
| BssMI | GATC | 5 cut(s) | 271, 373, 606, 613, 748 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 2 cut(s) | 28, 663 |
| Bst4CI | ACNGT | 1 cut(s) | 473 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstBAI | YACGTR | 1 cut(s) | 778 |
| BstDSI | CCRYGG | 1 cut(s) | 242 |
| BstKTI | GATC | 5 cut(s) | 274, 376, 609, 616, 751 |
| BstMAI | GTCTC | 1 cut(s) | 652 |
| BstMBI | GATC | 5 cut(s) | 271, 373, 606, 613, 748 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 152 |
| BstNI | CCWGG | 2 cut(s) | 28, 663 |
| BstSCI | CCNGG | 2 cut(s) | 26, 661 |
| BstV1I | GCAGC | 2 cut(s) | 413, 641 |
| BstV2I | GAAGAC | 2 cut(s) | 79, 493 |
| Bsu15I | ATCGAT | 1 cut(s) | 612 |
| BsuI | GTATCC | 2 cut(s) | 118, 319 |
| BsuRI | GGCC | 3 cut(s) | 11, 83, 124 |
| BsuTUI | ATCGAT | 1 cut(s) | 612 |
| BtgI | CCRYGG | 1 cut(s) | 242 |
| Cfr13I | GGNCC | 1 cut(s) | 763 |
| ClaI | ATCGAT | 1 cut(s) | 612 |
| Csp6I | GTAC | 3 cut(s) | 407, 474, 689 |
| CviAII | CATG | 2 cut(s) | 359, 604 |
| CviJI | RGCY | 6 cut(s) | 11, 31, 83, 124, 247, 426 |
| CviKI_1 | RGCY | 6 cut(s) | 11, 31, 83, 124, 247, 426 |
| CviQI | GTAC | 3 cut(s) | 407, 474, 689 |
| DpnI | GATC | 5 cut(s) | 273, 375, 608, 615, 750 |
| DpnII | GATC | 5 cut(s) | 271, 373, 606, 613, 748 |
| DraI | TTTAAA | 1 cut(s) | 313 |
| EaeI | YGGCCR | 1 cut(s) | 9 |
| Eco31I | GGTCTC | 1 cut(s) | 652 |
| Eco47I | GGWCC | 1 cut(s) | 763 |
| EcoRI | GAATTC | 1 cut(s) | 368 |
| EcoRII | CCWGG | 2 cut(s) | 26, 661 |
| FaeI | CATG | 2 cut(s) | 362, 607 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 314, 346, 393, 425 |
| FatI | CATG | 2 cut(s) | 358, 603 |
| FbaI | TGATCA | 2 cut(s) | 271, 606 |
| Fnu4HI | GCNGC | 2 cut(s) | 427, 630 |
| Fsp4HI | GCNGC | 2 cut(s) | 427, 630 |
| GluI | GCNGC | 2 cut(s) | 427, 630 |
| GsuI | CTGGAG | 3 cut(s) | 10, 503, 587 |
| HaeIII | GGCC | 3 cut(s) | 11, 83, 124 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 2 cut(s) | 362, 607 |
| HinfI | GANTC | 6 cut(s) | 167, 299, 485, 532, 573, 770 |
| HphI | GGTGA | 1 cut(s) | 527 |
| Hpy166II | GTNNAC | 1 cut(s) | 394 |
| Hpy188I | TCNGA | 3 cut(s) | 172, 339, 753 |
| Hpy188III | TCNNGA | 7 cut(s) | 62, 111, 365, 401, 566, 657, 676 |
| Hpy8I | GTNNAC | 1 cut(s) | 394 |
| Hpy99I | CGWCG | 1 cut(s) | 10 |
| HpyAV | CCTTC | 2 cut(s) | 340, 460 |
| HpyCH4III | ACNGT | 1 cut(s) | 473 |
| HpyCH4IV | ACGT | 3 cut(s) | 42, 183, 777 |
| HpyCH4V | TGCA | 5 cut(s) | 146, 189, 199, 429, 603 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 152 |
| HpySE526I | ACGT | 3 cut(s) | 42, 183, 777 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 2 cut(s) | 362, 607 |
| Ksp22I | TGATCA | 2 cut(s) | 271, 606 |
| Kzo9I | GATC | 5 cut(s) | 271, 373, 606, 613, 748 |
| LmnI | GCTCC | 2 cut(s) | 383, 568 |
| Lsp1109I | GCAGC | 2 cut(s) | 413, 641 |
| LweI | GCATC | 2 cut(s) | 133, 460 |
| MaeII | ACGT | 3 cut(s) | 42, 183, 777 |
| MaeIII | GTNAC | 1 cut(s) | 574 |
| MalI | GATC | 5 cut(s) | 273, 375, 608, 615, 750 |
| MboI | GATC | 5 cut(s) | 271, 373, 606, 613, 748 |
| MboII | GAAGA | 6 cut(s) | 47, 79, 176, 493, 725, 733 |
| MhlI | GDGCHC | 1 cut(s) | 388 |
| MluCI | AATT | 8 cut(s) | 147, 159, 308, 368, 438, 622, 650, 716 |
| MlyI | GAGTC | 2 cut(s) | 494, 582 |
| MnlI | CCTC | 6 cut(s) | 90, 114, 131, 345, 510, 515 |
| MroXI | GAANNNNTTC | 1 cut(s) | 42 |
| MseI | TTAA | 5 cut(s) | 312, 321, 459, 528, 548 |
| MspR9I | CCNGG | 2 cut(s) | 28, 663 |
| Mva1269I | GAATGC | 1 cut(s) | 349 |
| MvaI | CCWGG | 2 cut(s) | 28, 663 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 152 |
| NdeII | GATC | 5 cut(s) | 271, 373, 606, 613, 748 |
| NlaIII | CATG | 2 cut(s) | 362, 607 |
| NlaIV | GGNNCC | 1 cut(s) | 765 |
| NmuCI | GTSAC | 1 cut(s) | 574 |
| PctI | GAATGC | 1 cut(s) | 349 |
| PdmI | GAANNNNTTC | 1 cut(s) | 42 |
| PfeI | GAWTC | 4 cut(s) | 167, 299, 532, 770 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 117 |
| PkrI | GCNGC | 2 cut(s) | 428, 631 |
| PleI | GAGTC | 2 cut(s) | 493, 581 |
| PpsI | GAGTC | 2 cut(s) | 493, 581 |
| Ppu21I | YACGTR | 1 cut(s) | 778 |
| Psp1406I | AACGTT | 1 cut(s) | 42 |
| Psp6I | CCWGG | 2 cut(s) | 26, 661 |
| PspGI | CCWGG | 2 cut(s) | 26, 661 |
| PspN4I | GGNNCC | 1 cut(s) | 765 |
| PspPI | GGNCC | 1 cut(s) | 763 |
| RsaI | GTAC | 3 cut(s) | 408, 475, 690 |
| RsaNI | GTAC | 3 cut(s) | 407, 474, 689 |
| SaqAI | TTAA | 5 cut(s) | 312, 321, 459, 528, 548 |
| SatI | GCNGC | 2 cut(s) | 427, 630 |
| Sau3AI | GATC | 5 cut(s) | 271, 373, 606, 613, 748 |
| Sau96I | GGNCC | 1 cut(s) | 763 |
| ScaI | AGTACT | 1 cut(s) | 408 |
| SchI | GAGTC | 2 cut(s) | 494, 582 |
| ScrFI | CCNGG | 2 cut(s) | 28, 663 |
| SduI | GDGCHC | 1 cut(s) | 388 |
| SetI | ASST | 7 cut(s) | 45, 52, 186, 332, 540, 664, 780 |
| SfaNI | GCATC | 2 cut(s) | 133, 460 |
| SinI | GGWCC | 1 cut(s) | 763 |
| SmlI | CTYRAG | 2 cut(s) | 399, 514 |
| SmoI | CTYRAG | 2 cut(s) | 399, 514 |
| Sse9I | AATT | 8 cut(s) | 147, 159, 308, 368, 438, 622, 650, 716 |
| StyD4I | CCNGG | 2 cut(s) | 26, 661 |
| TaaI | ACNGT | 1 cut(s) | 473 |
| TaiI | ACGT | 3 cut(s) | 45, 186, 780 |
| TaqI | TCGA | 4 cut(s) | 254, 372, 612, 656 |
| TaqII | GACCGA | 1 cut(s) | 730 |
| TasI | AATT | 8 cut(s) | 147, 159, 308, 368, 438, 622, 650, 716 |
| TatI | WGTACW | 1 cut(s) | 406 |
| TfiI | GAWTC | 4 cut(s) | 167, 299, 532, 770 |
| Tru1I | TTAA | 5 cut(s) | 312, 321, 459, 528, 548 |
| Tru9I | TTAA | 5 cut(s) | 312, 321, 459, 528, 548 |
| TseFI | GTSAC | 1 cut(s) | 574 |
| TseI | GCWGC | 2 cut(s) | 426, 629 |
| Tsp45I | GTSAC | 1 cut(s) | 574 |
| TspDTI | ATGAA | 4 cut(s) | 312, 347, 493, 762 |
| TspGWI | ACGGA | 1 cut(s) | 278 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 117 |
| VpaK11BI | GGWCC | 1 cut(s) | 763 |
| XapI | RAATTY | 3 cut(s) | 308, 368, 650 |
| XmnI | GAANNNNTTC | 1 cut(s) | 42 |
| ZrmI | AGTACT | 1 cut(s) | 408 |