DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 15 - 126 | 1.7e-10 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 192 |
| AciI | CCGC | 1 cut(s) | 459 |
| AclWI | GGATC | 1 cut(s) | 410 |
| AcsI | RAATTY | 1 cut(s) | 130 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AgsI | TTSAA | 3 cut(s) | 335, 371, 593 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 246, 278 |
| AluBI | AGCT | 3 cut(s) | 78, 115, 251 |
| AluI | AGCT | 3 cut(s) | 78, 115, 251 |
| AlwI | GGATC | 1 cut(s) | 410 |
| AoxI | GGCC | 1 cut(s) | 346 |
| ApeKI | GCWGC | 4 cut(s) | 39, 105, 112, 248 |
| ApoI | RAATTY | 1 cut(s) | 130 |
| AsuC2I | CCSGG | 2 cut(s) | 212, 562 |
| AsuHPI | GGTGA | 2 cut(s) | 398, 517 |
| BbsI | GAAGAC | 1 cut(s) | 213 |
| BbvI | GCAGC | 4 cut(s) | 26, 92, 124, 260 |
| BcnI | CCSGG | 2 cut(s) | 212, 562 |
| BfaI | CTAG | 2 cut(s) | 57, 477 |
| BfmI | CTRYAG | 1 cut(s) | 40 |
| BisI | GCNGC | 4 cut(s) | 40, 106, 113, 249 |
| BlsI | GCNGC | 4 cut(s) | 41, 107, 114, 250 |
| Bme1390I | CCNGG | 2 cut(s) | 212, 562 |
| BmrFI | CCNGG | 2 cut(s) | 212, 562 |
| BmsI | GCATC | 1 cut(s) | 574 |
| BpiI | GAAGAC | 1 cut(s) | 213 |
| BpmI | CTGGAG | 1 cut(s) | 396 |
| BpuMI | CCSGG | 2 cut(s) | 212, 562 |
| BsaAI | YACGTR | 1 cut(s) | 196 |
| Bse1I | ACTGG | 1 cut(s) | 32 |
| Bse3DI | GCAATG | 1 cut(s) | 317 |
| BseGI | GGATG | 2 cut(s) | 448, 584 |
| BseMI | GCAATG | 1 cut(s) | 317 |
| BseNI | ACTGG | 1 cut(s) | 32 |
| BseXI | GCAGC | 4 cut(s) | 26, 92, 124, 260 |
| BshFI | GGCC | 1 cut(s) | 348 |
| BsiSI | CCGG | 2 cut(s) | 211, 562 |
| BsnI | GGCC | 1 cut(s) | 348 |
| Bsp1407I | TGTACA | 1 cut(s) | 18 |
| Bsp143I | GATC | 2 cut(s) | 415, 469 |
| BspACI | CCGC | 1 cut(s) | 459 |
| BspANI | GGCC | 1 cut(s) | 348 |
| BspMAI | CTGCAG | 1 cut(s) | 44 |
| BspPI | GGATC | 1 cut(s) | 410 |
| BsrDI | GCAATG | 1 cut(s) | 317 |
| BsrGI | TGTACA | 1 cut(s) | 18 |
| BsrI | ACTGG | 1 cut(s) | 32 |
| BssMI | GATC | 2 cut(s) | 415, 469 |
| BssNAI | GTATAC | 1 cut(s) | 193 |
| Bst1107I | GTATAC | 1 cut(s) | 193 |
| Bst4CI | ACNGT | 2 cut(s) | 92, 499 |
| Bst6I | CTCTTC | 2 cut(s) | 365, 527 |
| BstAUI | TGTACA | 1 cut(s) | 18 |
| BstBAI | YACGTR | 1 cut(s) | 196 |
| BstC8I | GCNNGC | 3 cut(s) | 29, 110, 599 |
| BstF5I | GGATG | 2 cut(s) | 448, 584 |
| BstKTI | GATC | 2 cut(s) | 418, 472 |
| BstMBI | GATC | 2 cut(s) | 415, 469 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 53, 562 |
| BstSCI | CCNGG | 2 cut(s) | 210, 560 |
| BstSFI | CTRYAG | 1 cut(s) | 40 |
| BstSNI | TACGTA | 1 cut(s) | 196 |
| BstV1I | GCAGC | 4 cut(s) | 26, 92, 124, 260 |
| BstV2I | GAAGAC | 1 cut(s) | 213 |
| BstX2I | RGATCY | 1 cut(s) | 415 |
| BstYI | RGATCY | 1 cut(s) | 415 |
| BstZ17I | GTATAC | 1 cut(s) | 193 |
| BsuRI | GGCC | 1 cut(s) | 348 |
| BtsCI | GGATG | 2 cut(s) | 448, 584 |
| BtsI | GCAGTG | 1 cut(s) | 49 |
| BtsIMutI | CAGTG | 3 cut(s) | 49, 504, 528 |
| Cac8I | GCNNGC | 3 cut(s) | 29, 110, 599 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviAII | CATG | 4 cut(s) | 158, 180, 383, 605 |
| CviJI | RGCY | 7 cut(s) | 31, 78, 115, 172, 224, 251, 348 |
| CviKI_1 | RGCY | 7 cut(s) | 31, 78, 115, 172, 224, 251, 348 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DpnI | GATC | 2 cut(s) | 417, 471 |
| DpnII | GATC | 2 cut(s) | 415, 469 |
| Eam1104I | CTCTTC | 2 cut(s) | 365, 527 |
| EarI | CTCTTC | 2 cut(s) | 365, 527 |
| Eco105I | TACGTA | 1 cut(s) | 196 |
| FaeI | CATG | 4 cut(s) | 161, 183, 386, 608 |
| FaiI | YATR | 7 cut(s) | 87, 159, 181, 193, 227, 384, 606 |
| FatI | CATG | 4 cut(s) | 157, 179, 382, 604 |
| FblI | GTMKAC | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 4 cut(s) | 40, 106, 113, 249 |
| FokI | GGATG | 2 cut(s) | 435, 571 |
| Fsp4HI | GCNGC | 4 cut(s) | 40, 106, 113, 249 |
| FspBI | CTAG | 2 cut(s) | 57, 477 |
| GluI | GCNGC | 4 cut(s) | 40, 106, 113, 249 |
| GsuI | CTGGAG | 1 cut(s) | 396 |
| HaeIII | GGCC | 1 cut(s) | 348 |
| HapII | CCGG | 2 cut(s) | 211, 562 |
| Hin1II | CATG | 4 cut(s) | 161, 183, 386, 608 |
| HinfI | GANTC | 2 cut(s) | 60, 367 |
| HpaII | CCGG | 2 cut(s) | 211, 562 |
| HphI | GGTGA | 2 cut(s) | 398, 517 |
| Hpy166II | GTNNAC | 2 cut(s) | 193, 389 |
| Hpy188I | TCNGA | 1 cut(s) | 442 |
| Hpy188III | TCNNGA | 4 cut(s) | 64, 278, 364, 413 |
| Hpy8I | GTNNAC | 2 cut(s) | 193, 389 |
| HpyAV | CCTTC | 1 cut(s) | 599 |
| HpyCH4III | ACNGT | 2 cut(s) | 92, 499 |
| HpyCH4IV | ACGT | 1 cut(s) | 195 |
| HpyCH4V | TGCA | 2 cut(s) | 42, 108 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 53, 562 |
| HpySE526I | ACGT | 1 cut(s) | 195 |
| Hsp92II | CATG | 4 cut(s) | 161, 183, 386, 608 |
| Kzo9I | GATC | 2 cut(s) | 415, 469 |
| LpnPI | CCDG | 9 cut(s) | 29, 45, 64, 224, 286, 291, 426, 480, 575 |
| Lsp1109I | GCAGC | 4 cut(s) | 26, 92, 124, 260 |
| LweI | GCATC | 1 cut(s) | 574 |
| MaeI | CTAG | 2 cut(s) | 57, 477 |
| MaeII | ACGT | 1 cut(s) | 195 |
| MaeIII | GTNAC | 2 cut(s) | 182, 196 |
| MalI | GATC | 2 cut(s) | 417, 471 |
| MboI | GATC | 2 cut(s) | 415, 469 |
| MboII | GAAGA | 3 cut(s) | 218, 352, 514 |
| MflI | RGATCY | 1 cut(s) | 415 |
| MluCI | AATT | 2 cut(s) | 130, 281 |
| MmeI | TCCRAC | 1 cut(s) | 476 |
| MnlI | CCTC | 1 cut(s) | 368 |
| MseI | TTAA | 2 cut(s) | 6, 153 |
| MspA1I | CMGCKG | 1 cut(s) | 251 |
| MspI | CCGG | 2 cut(s) | 211, 562 |
| MspR9I | CCNGG | 2 cut(s) | 212, 562 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 53, 562 |
| NciI | CCSGG | 2 cut(s) | 212, 562 |
| NdeII | GATC | 2 cut(s) | 415, 469 |
| NlaIII | CATG | 4 cut(s) | 161, 183, 386, 608 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 201 |
| PfeI | GAWTC | 2 cut(s) | 60, 367 |
| PkrI | GCNGC | 4 cut(s) | 41, 107, 114, 250 |
| Ppu21I | YACGTR | 1 cut(s) | 196 |
| PstI | CTGCAG | 1 cut(s) | 44 |
| PsuI | RGATCY | 1 cut(s) | 415 |
| PvuII | CAGCTG | 1 cut(s) | 251 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| SaqAI | TTAA | 2 cut(s) | 6, 153 |
| SatI | GCNGC | 4 cut(s) | 40, 106, 113, 249 |
| Sau3AI | GATC | 2 cut(s) | 415, 469 |
| ScrFI | CCNGG | 2 cut(s) | 212, 562 |
| SetI | ASST | 7 cut(s) | 80, 117, 198, 253, 275, 307, 360 |
| SfaNI | GCATC | 1 cut(s) | 574 |
| SfcI | CTRYAG | 1 cut(s) | 40 |
| SnaBI | TACGTA | 1 cut(s) | 196 |
| Sse9I | AATT | 2 cut(s) | 130, 281 |
| SsiI | CCGC | 1 cut(s) | 459 |
| SspMI | CTAG | 2 cut(s) | 57, 477 |
| StyD4I | CCNGG | 2 cut(s) | 210, 560 |
| TaaI | ACNGT | 2 cut(s) | 92, 499 |
| TaiI | ACGT | 1 cut(s) | 198 |
| TaqI | TCGA | 4 cut(s) | 65, 118, 204, 363 |
| TasI | AATT | 2 cut(s) | 130, 281 |
| TatI | WGTACW | 1 cut(s) | 18 |
| TfiI | GAWTC | 2 cut(s) | 60, 367 |
| Tru1I | TTAA | 2 cut(s) | 6, 153 |
| Tru9I | TTAA | 2 cut(s) | 6, 153 |
| TscAI | CASTG | 3 cut(s) | 49, 504, 535 |
| TseI | GCWGC | 4 cut(s) | 39, 105, 112, 248 |
| TspDTI | ATGAA | 4 cut(s) | 153, 174, 234, 621 |
| TspRI | CASTG | 3 cut(s) | 49, 504, 535 |
| XapI | RAATTY | 1 cut(s) | 130 |
| XmiI | GTMKAC | 1 cut(s) | 192 |
| XspI | CTAG | 2 cut(s) | 57, 477 |