DNA recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 261, 540 |
| Acc36I | ACCTGC | 2 cut(s) | 261, 540 |
| AciI | CCGC | 1 cut(s) | 908 |
| AcsI | RAATTY | 1 cut(s) | 833 |
| AcyI | GRCGYC | 2 cut(s) | 361, 640 |
| AfaI | GTAC | 6 cut(s) | 245, 369, 524, 648, 862, 914 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 907 |
| AflII | CTTAAG | 1 cut(s) | 820 |
| AjiI | CACGTC | 1 cut(s) | 35 |
| AluBI | AGCT | 5 cut(s) | 672, 687, 819, 986, 1067 |
| AluI | AGCT | 5 cut(s) | 672, 687, 819, 986, 1067 |
| Alw21I | GWGCWC | 2 cut(s) | 682, 872 |
| Alw26I | GTCTC | 1 cut(s) | 669 |
| Alw44I | GTGCAC | 1 cut(s) | 678 |
| AoxI | GGCC | 2 cut(s) | 347, 626 |
| ApaLI | GTGCAC | 1 cut(s) | 678 |
| ApeKI | GCWGC | 3 cut(s) | 152, 431, 752 |
| ApoI | RAATTY | 1 cut(s) | 833 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 42, 74, 647, 679 |
| AspLEI | GCGC | 2 cut(s) | 157, 436 |
| AsuHPI | GGTGA | 2 cut(s) | 868, 1002 |
| BaeGI | GKGCMC | 1 cut(s) | 682 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 247, 280, 526, 559 |
| Bbv12I | GWGCWC | 2 cut(s) | 682, 872 |
| BbvI | GCAGC | 3 cut(s) | 164, 443, 739 |
| BccI | CCATC | 1 cut(s) | 1015 |
| BcoDI | GTCTC | 1 cut(s) | 669 |
| BfrI | CTTAAG | 1 cut(s) | 820 |
| BfuAI | ACCTGC | 2 cut(s) | 261, 540 |
| BisI | GCNGC | 3 cut(s) | 153, 432, 753 |
| BlsI | GCNGC | 3 cut(s) | 154, 433, 754 |
| BmgBI | CACGTC | 1 cut(s) | 35 |
| BmsI | GCATC | 5 cut(s) | 312, 591, 739, 830, 1011 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 721, 753 |
| Bsa29I | ATCGAT | 1 cut(s) | 267 |
| BsaAI | YACGTR | 2 cut(s) | 367, 646 |
| BsaHI | GRCGYC | 2 cut(s) | 361, 640 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 907 |
| BseCI | ATCGAT | 1 cut(s) | 267 |
| BseGI | GGATG | 1 cut(s) | 999 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 907 |
| BseMII | CTCAG | 1 cut(s) | 682 |
| BseSI | GKGCMC | 1 cut(s) | 682 |
| BseXI | GCAGC | 3 cut(s) | 164, 443, 739 |
| BsgI | GTGCAG | 4 cut(s) | 88, 239, 518, 738 |
| Bsh1285I | CGRYCG | 1 cut(s) | 964 |
| BshFI | GGCC | 2 cut(s) | 349, 628 |
| BshVI | ATCGAT | 1 cut(s) | 267 |
| BsiEI | CGRYCG | 1 cut(s) | 964 |
| BsiHKAI | GWGCWC | 2 cut(s) | 682, 872 |
| BslFI | GGGAC | 2 cut(s) | 312, 591 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 907 |
| BsmAI | GTCTC | 1 cut(s) | 669 |
| BsmFI | GGGAC | 2 cut(s) | 312, 591 |
| BsmI | GAATGC | 2 cut(s) | 118, 397 |
| BsnI | GGCC | 2 cut(s) | 349, 628 |
| Bsp1286I | GDGCHC | 2 cut(s) | 682, 872 |
| BspACI | CCGC | 1 cut(s) | 908 |
| BspANI | GGCC | 2 cut(s) | 349, 628 |
| BspCNI | CTCAG | 1 cut(s) | 681 |
| BspDI | ATCGAT | 1 cut(s) | 267 |
| BspMI | ACCTGC | 2 cut(s) | 261, 540 |
| BspTI | CTTAAG | 1 cut(s) | 820 |
| BssNI | GRCGYC | 2 cut(s) | 361, 640 |
| Bst4CI | ACNGT | 5 cut(s) | 75, 105, 263, 542, 860 |
| BstACI | GRCGYC | 2 cut(s) | 361, 640 |
| BstAFI | CTTAAG | 1 cut(s) | 820 |
| BstBAI | YACGTR | 2 cut(s) | 367, 646 |
| BstDEI | CTNAG | 1 cut(s) | 668 |
| BstF5I | GGATG | 1 cut(s) | 999 |
| BstHHI | GCGC | 2 cut(s) | 157, 436 |
| BstMAI | GTCTC | 1 cut(s) | 669 |
| BstMCI | CGRYCG | 1 cut(s) | 964 |
| BstSLI | GKGCMC | 1 cut(s) | 682 |
| BstV1I | GCAGC | 3 cut(s) | 164, 443, 739 |
| Bsu15I | ATCGAT | 1 cut(s) | 267 |
| BsuRI | GGCC | 2 cut(s) | 349, 628 |
| BsuTUI | ATCGAT | 1 cut(s) | 267 |
| BtrI | CACGTC | 1 cut(s) | 35 |
| BtsCI | GGATG | 1 cut(s) | 999 |
| BveI | ACCTGC | 2 cut(s) | 261, 540 |
| CfoI | GCGC | 2 cut(s) | 157, 436 |
| ClaI | ATCGAT | 1 cut(s) | 267 |
| CseI | GACGC | 4 cut(s) | 309, 369, 588, 648 |
| Csp6I | GTAC | 6 cut(s) | 244, 368, 523, 647, 861, 913 |
| CviAII | CATG | 1 cut(s) | 865 |
| CviQI | GTAC | 6 cut(s) | 244, 368, 523, 647, 861, 913 |
| DdeI | CTNAG | 1 cut(s) | 668 |
| Eco147I | AGGCCT | 2 cut(s) | 349, 628 |
| EcoRI | GAATTC | 1 cut(s) | 833 |
| FaeI | CATG | 1 cut(s) | 868 |
| FaqI | GGGAC | 2 cut(s) | 312, 591 |
| FatI | CATG | 1 cut(s) | 864 |
| Fnu4HI | GCNGC | 3 cut(s) | 153, 432, 753 |
| FokI | GGATG | 1 cut(s) | 986 |
| Fsp4HI | GCNGC | 3 cut(s) | 153, 432, 753 |
| GlaI | GCGC | 2 cut(s) | 156, 435 |
| GluI | GCNGC | 3 cut(s) | 153, 432, 753 |
| HaeIII | GGCC | 2 cut(s) | 349, 628 |
| HgaI | GACGC | 4 cut(s) | 309, 369, 588, 648 |
| HhaI | GCGC | 2 cut(s) | 157, 436 |
| Hin1I | GRCGYC | 2 cut(s) | 361, 640 |
| Hin1II | CATG | 1 cut(s) | 868 |
| Hin6I | GCGC | 2 cut(s) | 155, 434 |
| HinP1I | GCGC | 2 cut(s) | 155, 434 |
| HindIII | AAGCTT | 1 cut(s) | 817 |
| HinfI | GANTC | 5 cut(s) | 13, 57, 128, 407, 1085 |
| HphI | GGTGA | 2 cut(s) | 868, 1002 |
| Hpy166II | GTNNAC | 1 cut(s) | 680 |
| Hpy188I | TCNGA | 3 cut(s) | 62, 839, 1090 |
| Hpy188III | TCNNGA | 4 cut(s) | 357, 636, 890, 995 |
| Hpy8I | GTNNAC | 1 cut(s) | 680 |
| Hpy99I | CGWCG | 2 cut(s) | 278, 557 |
| HpyAV | CCTTC | 6 cut(s) | 335, 339, 614, 618, 889, 1065 |
| HpyCH4III | ACNGT | 5 cut(s) | 75, 105, 263, 542, 860 |
| HpyCH4IV | ACGT | 4 cut(s) | 34, 87, 366, 645 |
| HpyCH4V | TGCA | 8 cut(s) | 69, 256, 535, 680, 714, 755, 843, 1072 |
| HpyF3I | CTNAG | 1 cut(s) | 668 |
| HpySE526I | ACGT | 4 cut(s) | 34, 87, 366, 645 |
| Hsp92I | GRCGYC | 2 cut(s) | 361, 640 |
| Hsp92II | CATG | 1 cut(s) | 868 |
| HspAI | GCGC | 2 cut(s) | 155, 434 |
| Lsp1109I | GCAGC | 3 cut(s) | 164, 443, 739 |
| LweI | GCATC | 5 cut(s) | 312, 591, 739, 830, 1011 |
| MaeII | ACGT | 4 cut(s) | 34, 87, 366, 645 |
| MaeIII | GTNAC | 4 cut(s) | 331, 610, 733, 1033 |
| MboII | GAAGA | 3 cut(s) | 175, 454, 734 |
| MfeI | CAATTG | 4 cut(s) | 192, 321, 471, 600 |
| MhlI | GDGCHC | 2 cut(s) | 682, 872 |
| MlyI | GAGTC | 1 cut(s) | 66 |
| MmeI | TCCRAC | 1 cut(s) | 1027 |
| MnlI | CCTC | 9 cut(s) | 74, 219, 293, 319, 498, 572, 598, 723, 804 |
| MseI | TTAA | 4 cut(s) | 803, 821, 854, 956 |
| MspA1I | CMGCKG | 1 cut(s) | 908 |
| MspCI | CTTAAG | 1 cut(s) | 820 |
| MunI | CAATTG | 4 cut(s) | 192, 321, 471, 600 |
| Mva1269I | GAATGC | 2 cut(s) | 118, 397 |
| NlaIII | CATG | 1 cut(s) | 868 |
| NmuCI | GTSAC | 4 cut(s) | 331, 610, 733, 1033 |
| PaqCI | CACCTGC | 2 cut(s) | 261, 540 |
| PceI | AGGCCT | 2 cut(s) | 349, 628 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 273 |
| PctI | GAATGC | 2 cut(s) | 118, 397 |
| PfeI | GAWTC | 4 cut(s) | 13, 128, 407, 1085 |
| PkrI | GCNGC | 3 cut(s) | 154, 433, 754 |
| PleI | GAGTC | 1 cut(s) | 65 |
| PpsI | GAGTC | 1 cut(s) | 65 |
| Ppu21I | YACGTR | 2 cut(s) | 367, 646 |
| RsaI | GTAC | 6 cut(s) | 245, 369, 524, 648, 862, 914 |
| RsaNI | GTAC | 6 cut(s) | 244, 368, 523, 647, 861, 913 |
| SaqAI | TTAA | 4 cut(s) | 803, 821, 854, 956 |
| SatI | GCNGC | 3 cut(s) | 153, 432, 753 |
| SchI | GAGTC | 1 cut(s) | 66 |
| SduI | GDGCHC | 2 cut(s) | 682, 872 |
| SfaNI | GCATC | 5 cut(s) | 312, 591, 739, 830, 1011 |
| SmlI | CTYRAG | 1 cut(s) | 820 |
| SmoI | CTYRAG | 1 cut(s) | 820 |
| SseBI | AGGCCT | 2 cut(s) | 349, 628 |
| SsiI | CCGC | 1 cut(s) | 908 |
| StuI | AGGCCT | 2 cut(s) | 349, 628 |
| TaaI | ACNGT | 5 cut(s) | 75, 105, 263, 542, 860 |
| TaiI | ACGT | 4 cut(s) | 37, 90, 369, 648 |
| TaqI | TCGA | 2 cut(s) | 5, 267 |
| TaqII | GACCGA | 1 cut(s) | 978 |
| TatI | WGTACW | 3 cut(s) | 243, 522, 912 |
| TfiI | GAWTC | 4 cut(s) | 13, 128, 407, 1085 |
| Tru1I | TTAA | 4 cut(s) | 803, 821, 854, 956 |
| Tru9I | TTAA | 4 cut(s) | 803, 821, 854, 956 |
| TseFI | GTSAC | 4 cut(s) | 331, 610, 733, 1033 |
| TseI | GCWGC | 3 cut(s) | 152, 431, 752 |
| Tsp45I | GTSAC | 4 cut(s) | 331, 610, 733, 1033 |
| TspDTI | ATGAA | 2 cut(s) | 108, 871 |
| Vha464I | CTTAAG | 1 cut(s) | 820 |
| VneI | GTGCAC | 1 cut(s) | 678 |
| XapI | RAATTY | 1 cut(s) | 833 |