BSD domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| BSD | PF03909 | 3 - 49 | 9.6e-10 | BSD domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 779 |
| AciI | CCGC | 7 cut(s) | 275, 278, 289, 426, 432, 435, 651 |
| AfaI | GTAC | 6 cut(s) | 673, 688, 698, 725, 763, 994 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 337, 946, 1002 |
| AflIII | ACRYGT | 2 cut(s) | 674, 758 |
| AgsI | TTSAA | 3 cut(s) | 503, 779, 824 |
| AjnI | CCWGG | 1 cut(s) | 689 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 864, 896 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 429, 461 |
| AluBI | AGCT | 4 cut(s) | 59, 76, 512, 914 |
| AluI | AGCT | 4 cut(s) | 59, 76, 512, 914 |
| Alw26I | GTCTC | 4 cut(s) | 177, 572, 629, 799 |
| Ama87I | CYCGRG | 1 cut(s) | 180 |
| AoxI | GGCC | 1 cut(s) | 353 |
| ApeKI | GCWGC | 3 cut(s) | 59, 653, 967 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 278, 310 |
| AspLEI | GCGC | 2 cut(s) | 49, 308 |
| AspS9I | GGNCC | 2 cut(s) | 214, 340 |
| AsuC2I | CCSGG | 3 cut(s) | 259, 338, 941 |
| AsuHPI | GGTGA | 1 cut(s) | 880 |
| AvaI | CYCGRG | 1 cut(s) | 180 |
| AvaII | GGWCC | 2 cut(s) | 214, 340 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 670, 703 |
| BbvI | GCAGC | 3 cut(s) | 46, 640, 954 |
| BccI | CCATC | 1 cut(s) | 520 |
| BceAI | ACGGC | 1 cut(s) | 340 |
| BciT130I | CCWGG | 1 cut(s) | 691 |
| BciVI | GTATCC | 1 cut(s) | 464 |
| BclI | TGATCA | 1 cut(s) | 748 |
| BcnI | CCSGG | 3 cut(s) | 259, 338, 941 |
| BcoDI | GTCTC | 4 cut(s) | 177, 572, 629, 799 |
| BfuI | GTATCC | 1 cut(s) | 464 |
| BisI | GCNGC | 5 cut(s) | 60, 276, 433, 654, 968 |
| BlsI | GCNGC | 5 cut(s) | 61, 277, 434, 655, 969 |
| Bme1390I | CCNGG | 4 cut(s) | 259, 338, 691, 941 |
| Bme18I | GGWCC | 2 cut(s) | 214, 340 |
| BmeT110I | CYCGRG | 1 cut(s) | 180 |
| BmgT120I | GGNCC | 2 cut(s) | 214, 340 |
| BmrFI | CCNGG | 4 cut(s) | 259, 338, 691, 941 |
| BmsI | GCATC | 2 cut(s) | 146, 894 |
| BpuEI | CTTGAG | 1 cut(s) | 511 |
| BpuMI | CCSGG | 3 cut(s) | 259, 338, 941 |
| BsaAI | YACGTR | 1 cut(s) | 677 |
| BsaBI | GATNNNNATC | 1 cut(s) | 747 |
| BsaI | GGTCTC | 1 cut(s) | 177 |
| BsaJI | CCNNGG | 1 cut(s) | 791 |
| BsaWI | WCCGGW | 1 cut(s) | 221 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 429, 459 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 337, 946, 1002 |
| Bse1I | ACTGG | 1 cut(s) | 906 |
| Bse8I | GATNNNNATC | 1 cut(s) | 747 |
| BseBI | CCWGG | 1 cut(s) | 691 |
| BseDI | CCNNGG | 1 cut(s) | 791 |
| BseGI | GGATG | 2 cut(s) | 161, 710 |
| BseJI | GATNNNNATC | 1 cut(s) | 747 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 337, 946, 1002 |
| BseMII | CTCAG | 1 cut(s) | 794 |
| BseNI | ACTGG | 1 cut(s) | 906 |
| BseRI | GAGGAG | 2 cut(s) | 508, 522 |
| BseXI | GCAGC | 3 cut(s) | 46, 640, 954 |
| BseYI | CCCAGC | 2 cut(s) | 12, 360 |
| BsgI | GTGCAG | 1 cut(s) | 317 |
| BshFI | GGCC | 1 cut(s) | 355 |
| BsiHKCI | CYCGRG | 1 cut(s) | 180 |
| BsiSI | CCGG | 4 cut(s) | 222, 258, 338, 941 |
| BslFI | GGGAC | 3 cut(s) | 161, 548, 767 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 337, 946, 1002 |
| BsmAI | GTCTC | 4 cut(s) | 177, 572, 629, 799 |
| BsmFI | GGGAC | 3 cut(s) | 161, 548, 767 |
| BsmI | GAATGC | 2 cut(s) | 133, 935 |
| BsnI | GGCC | 1 cut(s) | 355 |
| Bso31I | GGTCTC | 1 cut(s) | 177 |
| BsoBI | CYCGRG | 1 cut(s) | 180 |
| Bsp143I | GATC | 1 cut(s) | 748 |
| Bsp19I | CCATGG | 1 cut(s) | 791 |
| BspACI | CCGC | 7 cut(s) | 275, 278, 289, 426, 432, 435, 651 |
| BspANI | GGCC | 1 cut(s) | 355 |
| BspCNI | CTCAG | 1 cut(s) | 795 |
| BspTNI | GGTCTC | 1 cut(s) | 177 |
| BsrI | ACTGG | 1 cut(s) | 906 |
| BssECI | CCNNGG | 1 cut(s) | 791 |
| BssMI | GATC | 1 cut(s) | 748 |
| BssT1I | CCWWGG | 1 cut(s) | 791 |
| Bst2UI | CCWGG | 1 cut(s) | 691 |
| Bst4CI | ACNGT | 2 cut(s) | 476, 539 |
| Bst6I | CTCTTC | 1 cut(s) | 792 |
| BstBAI | YACGTR | 1 cut(s) | 677 |
| BstC8I | GCNNGC | 1 cut(s) | 24 |
| BstDEI | CTNAG | 1 cut(s) | 803 |
| BstDSI | CCRYGG | 1 cut(s) | 791 |
| BstF5I | GGATG | 2 cut(s) | 161, 710 |
| BstHHI | GCGC | 2 cut(s) | 49, 308 |
| BstKTI | GATC | 1 cut(s) | 751 |
| BstMAI | GTCTC | 4 cut(s) | 177, 572, 629, 799 |
| BstMBI | GATC | 1 cut(s) | 748 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 93, 139, 148, 432, 486 |
| BstNI | CCWGG | 1 cut(s) | 691 |
| BstNSI | RCATGY | 2 cut(s) | 26, 762 |
| BstSCI | CCNGG | 4 cut(s) | 257, 336, 689, 939 |
| BstV1I | GCAGC | 3 cut(s) | 46, 640, 954 |
| BsuI | GTATCC | 1 cut(s) | 464 |
| BsuRI | GGCC | 1 cut(s) | 355 |
| BtgI | CCRYGG | 1 cut(s) | 791 |
| BtsCI | GGATG | 2 cut(s) | 161, 710 |
| Cac8I | GCNNGC | 1 cut(s) | 24 |
| CfoI | GCGC | 2 cut(s) | 49, 308 |
| Cfr13I | GGNCC | 2 cut(s) | 214, 340 |
| CsiI | ACCWGGT | 1 cut(s) | 689 |
| Csp6I | GTAC | 6 cut(s) | 672, 687, 697, 724, 762, 993 |
| CviAII | CATG | 6 cut(s) | 23, 628, 759, 770, 792, 814 |
| CviQI | GTAC | 6 cut(s) | 672, 687, 697, 724, 762, 993 |
| DdeI | CTNAG | 1 cut(s) | 803 |
| DpnI | GATC | 1 cut(s) | 750 |
| DpnII | GATC | 1 cut(s) | 748 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 779 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 779 |
| Eam1104I | CTCTTC | 1 cut(s) | 792 |
| EarI | CTCTTC | 1 cut(s) | 792 |
| EciI | GGCGGA | 1 cut(s) | 450 |
| Eco130I | CCWWGG | 1 cut(s) | 791 |
| Eco31I | GGTCTC | 1 cut(s) | 177 |
| Eco47I | GGWCC | 2 cut(s) | 214, 340 |
| Eco88I | CYCGRG | 1 cut(s) | 180 |
| EcoRII | CCWGG | 1 cut(s) | 689 |
| EcoT14I | CCWWGG | 1 cut(s) | 791 |
| ErhI | CCWWGG | 1 cut(s) | 791 |
| FaeI | CATG | 6 cut(s) | 26, 631, 762, 773, 795, 817 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 496, 528, 771, 803 |
| FaqI | GGGAC | 3 cut(s) | 161, 548, 767 |
| FatI | CATG | 6 cut(s) | 22, 627, 758, 769, 791, 813 |
| FauI | CCCGC | 2 cut(s) | 271, 658 |
| FauNDI | CATATG | 1 cut(s) | 90 |
| FbaI | TGATCA | 1 cut(s) | 748 |
| Fnu4HI | GCNGC | 5 cut(s) | 60, 276, 433, 654, 968 |
| FokI | GGATG | 2 cut(s) | 168, 717 |
| Fsp4HI | GCNGC | 5 cut(s) | 60, 276, 433, 654, 968 |
| GlaI | GCGC | 2 cut(s) | 48, 307 |
| GluI | GCNGC | 5 cut(s) | 60, 276, 433, 654, 968 |
| GsaI | CCCAGC | 2 cut(s) | 16, 364 |
| HaeIII | GGCC | 1 cut(s) | 355 |
| HapII | CCGG | 4 cut(s) | 222, 258, 338, 941 |
| HhaI | GCGC | 2 cut(s) | 49, 308 |
| Hin1II | CATG | 6 cut(s) | 26, 631, 762, 773, 795, 817 |
| Hin6I | GCGC | 2 cut(s) | 47, 306 |
| HinP1I | GCGC | 2 cut(s) | 47, 306 |
| HincII | GTYRAC | 1 cut(s) | 907 |
| HindII | GTYRAC | 1 cut(s) | 907 |
| HinfI | GANTC | 4 cut(s) | 69, 174, 209, 835 |
| HpaII | CCGG | 4 cut(s) | 222, 258, 338, 941 |
| HphI | GGTGA | 1 cut(s) | 880 |
| Hpy166II | GTNNAC | 4 cut(s) | 674, 756, 872, 907 |
| Hpy188I | TCNGA | 6 cut(s) | 7, 214, 347, 462, 520, 862 |
| Hpy188III | TCNNGA | 1 cut(s) | 109 |
| Hpy8I | GTNNAC | 4 cut(s) | 674, 756, 872, 907 |
| Hpy99I | CGWCG | 1 cut(s) | 665 |
| HpyAV | CCTTC | 3 cut(s) | 435, 478, 864 |
| HpyCH4III | ACNGT | 2 cut(s) | 476, 539 |
| HpyCH4IV | ACGT | 2 cut(s) | 380, 676 |
| HpyCH4V | TGCA | 3 cut(s) | 133, 334, 656 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 93, 139, 148, 432, 486 |
| HpyF3I | CTNAG | 1 cut(s) | 803 |
| HpySE526I | ACGT | 2 cut(s) | 380, 676 |
| Hsp92II | CATG | 6 cut(s) | 26, 631, 762, 773, 795, 817 |
| HspAI | GCGC | 2 cut(s) | 47, 306 |
| Ksp22I | TGATCA | 1 cut(s) | 748 |
| Kzo9I | GATC | 1 cut(s) | 748 |
| LmnI | GCTCC | 1 cut(s) | 509 |
| Lsp1109I | GCAGC | 3 cut(s) | 46, 640, 954 |
| LweI | GCATC | 2 cut(s) | 146, 894 |
| MabI | ACCWGGT | 1 cut(s) | 689 |
| MaeII | ACGT | 2 cut(s) | 380, 676 |
| MaeIII | GTNAC | 2 cut(s) | 546, 677 |
| MalI | GATC | 1 cut(s) | 750 |
| MboI | GATC | 1 cut(s) | 748 |
| MboII | GAAGA | 9 cut(s) | 119, 317, 507, 752, 779, 836, 849, 941, 980 |
| MfeI | CAATTG | 2 cut(s) | 819, 977 |
| MluCI | AATT | 6 cut(s) | 282, 465, 620, 819, 977, 1012 |
| MlyI | GAGTC | 1 cut(s) | 183 |
| MmeI | TCCRAC | 1 cut(s) | 578 |
| MseI | TTAA | 2 cut(s) | 245, 404 |
| MspA1I | CMGCKG | 1 cut(s) | 653 |
| MspI | CCGG | 4 cut(s) | 222, 258, 338, 941 |
| MspR9I | CCNGG | 4 cut(s) | 259, 338, 691, 941 |
| MunI | CAATTG | 2 cut(s) | 819, 977 |
| Mva1269I | GAATGC | 2 cut(s) | 133, 935 |
| MvaI | CCWGG | 1 cut(s) | 691 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 93, 139, 148, 432, 486 |
| NciI | CCSGG | 3 cut(s) | 259, 338, 941 |
| NcoI | CCATGG | 1 cut(s) | 791 |
| NdeI | CATATG | 1 cut(s) | 90 |
| NdeII | GATC | 1 cut(s) | 748 |
| NlaIII | CATG | 6 cut(s) | 26, 631, 762, 773, 795, 817 |
| NmeAIII | GCCGAG | 1 cut(s) | 75 |
| NspI | RCATGY | 2 cut(s) | 26, 762 |
| PaeI | GCATGC | 1 cut(s) | 26 |
| PciI | ACATGT | 1 cut(s) | 758 |
| PctI | GAATGC | 2 cut(s) | 133, 935 |
| PfeI | GAWTC | 3 cut(s) | 69, 209, 835 |
| PfoI | TCCNGGA | 1 cut(s) | 257 |
| PkrI | GCNGC | 5 cut(s) | 61, 277, 434, 655, 969 |
| PleI | GAGTC | 1 cut(s) | 182 |
| PpsI | GAGTC | 1 cut(s) | 182 |
| Ppu21I | YACGTR | 1 cut(s) | 677 |
| PscI | ACATGT | 1 cut(s) | 758 |
| Psp6I | CCWGG | 1 cut(s) | 689 |
| PspFI | CCCAGC | 2 cut(s) | 12, 360 |
| PspGI | CCWGG | 1 cut(s) | 689 |
| PspPI | GGNCC | 2 cut(s) | 214, 340 |
| RsaI | GTAC | 6 cut(s) | 673, 688, 698, 725, 763, 994 |
| RsaNI | GTAC | 6 cut(s) | 672, 687, 697, 724, 762, 993 |
| SaqAI | TTAA | 2 cut(s) | 245, 404 |
| SatI | GCNGC | 5 cut(s) | 60, 276, 433, 654, 968 |
| Sau3AI | GATC | 1 cut(s) | 748 |
| Sau96I | GGNCC | 2 cut(s) | 214, 340 |
| SchI | GAGTC | 1 cut(s) | 183 |
| ScrFI | CCNGG | 4 cut(s) | 259, 338, 691, 941 |
| SexAI | ACCWGGT | 1 cut(s) | 689 |
| SfaNI | GCATC | 2 cut(s) | 146, 894 |
| SinI | GGWCC | 2 cut(s) | 214, 340 |
| SmlI | CTYRAG | 1 cut(s) | 490 |
| SmoI | CTYRAG | 1 cut(s) | 490 |
| SphI | GCATGC | 1 cut(s) | 26 |
| Sse9I | AATT | 6 cut(s) | 282, 465, 620, 819, 977, 1012 |
| SsiI | CCGC | 7 cut(s) | 275, 278, 289, 426, 432, 435, 651 |
| StyD4I | CCNGG | 4 cut(s) | 257, 336, 689, 939 |
| StyI | CCWWGG | 1 cut(s) | 791 |
| TaaI | ACNGT | 2 cut(s) | 476, 539 |
| TaiI | ACGT | 2 cut(s) | 383, 679 |
| TaqI | TCGA | 4 cut(s) | 72, 137, 201, 207 |
| TasI | AATT | 6 cut(s) | 282, 465, 620, 819, 977, 1012 |
| TatI | WGTACW | 1 cut(s) | 671 |
| TauI | GCSGC | 2 cut(s) | 278, 435 |
| TfiI | GAWTC | 3 cut(s) | 69, 209, 835 |
| Tru1I | TTAA | 2 cut(s) | 245, 404 |
| Tru9I | TTAA | 2 cut(s) | 245, 404 |
| TseI | GCWGC | 3 cut(s) | 59, 653, 967 |
| TspDTI | ATGAA | 2 cut(s) | 187, 644 |
| TspGWI | ACGGA | 3 cut(s) | 72, 359, 572 |
| VpaK11BI | GGWCC | 2 cut(s) | 214, 340 |
| XceI | RCATGY | 2 cut(s) | 26, 762 |